ZRdb KZFP & Repeats
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LINE_L1HS_3END

  • Name
    L1HS_3END
  • Repbase
    L1HS
  • Type
    LINE
  • Emergence
    8.6 Mya
  • Dfam Id
    DF0000225
Description :

Currently active in human genome.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaagaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccactatgagatatcatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgcggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatatcctttgtagggacatggatgaaattggaaaccatcattctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgtggtggggtcgggggaggggggagggatagcattgggagatatacctaatgctagatgacacgttagtgggtgcagcgcaccagcatggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttagagtataataaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 160 99.0 Weakly correlated
2 ZNF560 82 43.0 Weakly correlated
3 ZNF486 48 8.6 Highly correlated
4 ZNF679 46 28.9 Weakly correlated
5 ZNF84 44 99.0 Weakly correlated
6 ZNF141 32 43.0 Weakly correlated
7 ZNF649 31 28.9 Weakly correlated
8 ZNF2 28 99.0 Weakly correlated
9 ZNF394 25 99.0 Weakly correlated
10 ZFP69B 21 99.0 Weakly correlated
11 ZFP57 17 87.0 Weakly correlated
12 ZNF610 16 28.9 Weakly correlated
13 ZNF92 15 28.9 Weakly correlated
14 ZNF18 14 160.0 Weakly correlated
15 ZFP37 13 99.0 Weakly correlated
16 ZNF324 13 99.0 Weakly correlated
17 ZNF317 12 99.0 Weakly correlated
18 ZNF528 11 43.0 Weakly correlated
19 ZNF136 10 74.0 Weakly correlated
20 ZNF558 10 99.0 Weakly correlated
21 ZNF93 9 8.6 Highly correlated
22 ZNF490 8 43.0 Weakly correlated
23 ZNF91 8 6.0 Moderately correlated
24 ZNF251 7 94.0 Weakly correlated
25 ZNF479 7 6.4 Moderately correlated
26 ZNF705B 7 28.9 Weakly correlated
27 ZNF723 7 15.2 Weakly correlated
28 ZNF101 6 43.0 Weakly correlated
29 ZNF28 6 28.9 Weakly correlated
30 ZNF585B 6 99.0 Weakly correlated
31 ZNF8 6 99.0 Weakly correlated
32 ZKSCAN8 5 160.0 Weakly correlated
33 ZNF519 5 19.6 Weakly correlated
34 ZNF534 5 19.6 Weakly correlated
35 ZNF559 5 74.0 Weakly correlated
36 ZNF705D 5 28.9 Weakly correlated
37 ZNF765 5 8.6 Highly correlated
38 ZNF792 5 94.0 Weakly correlated
39 ZIM3 4 87.0 Weakly correlated
40 ZKSCAN1 4 160.0 Weakly correlated
41 ZNF175 4 94.0 Weakly correlated
42 ZNF182 4 99.0 Weakly correlated
43 ZNF425 4 94.0 Weakly correlated
44 ZNF554 4 99.0 Weakly correlated
45 ZNF680 4 28.9 Weakly correlated
46 ZNF701 4 28.9 Weakly correlated
47 ZNF766 4 43.0 Weakly correlated
48 ZNF17 3 69.0 Weakly correlated
49 ZNF197 3 99.0 Weakly correlated
50 ZNF547 3 74.0 Weakly correlated
51 ZNF589 3 28.9 Weakly correlated
52 ZNF641 3 99.0 Weakly correlated
53 ZNF735 3 28.9 Weakly correlated
54 ZNF747 3 43.0 Weakly correlated
55 ZNF786 3 99.0 Weakly correlated
56 ZNF793 3 99.0 Weakly correlated
57 ZFP30 2 99.0 Weakly correlated
58 ZNF160 2 74.0 Weakly correlated
59 ZNF202 2 160.0 Weakly correlated
60 ZNF230 2 28.9 Weakly correlated
61 ZNF263 2 180.0 Weakly correlated
62 ZNF282 2 319.0 Weakly correlated
63 ZNF33A 2 99.0 Weakly correlated
64 ZNF343 2 74.0 Weakly correlated
65 ZNF420 2 94.0 Weakly correlated
66 ZNF471 2 94.0 Weakly correlated
67 ZNF506 2 28.9 Weakly correlated
68 ZNF510 2 99.0 Weakly correlated
69 ZNF514 2 94.0 Weakly correlated
70 ZNF551 2 94.0 Weakly correlated
71 ZNF584 2 99.0 Weakly correlated
72 ZNF677 2 99.0 Weakly correlated
73 ZNF778 2 74.0 Weakly correlated
74 ZNF829 2 99.0 Weakly correlated
75 ZNF878 2 43.0 Weakly correlated
76 ZFP92 1 99.0 Weakly correlated
77 ZKSCAN2 1 180.0 Weakly correlated
78 ZKSCAN4 1 99.0 Weakly correlated
79 ZNF124 1 43.0 Weakly correlated
80 ZNF133 1 99.0 Weakly correlated
81 ZNF177 1 94.0 Weakly correlated
82 ZNF195 1 28.9 Weakly correlated
83 ZNF20 1 43.0 Weakly correlated
84 ZNF215 1 99.0 Weakly correlated
85 ZNF222 1 43.0 Weakly correlated
86 ZNF253 1 19.6 Weakly correlated
87 ZNF256 1 74.0 Weakly correlated
88 ZNF257 1 0.0 Moderately correlated
89 ZNF268 1 94.0 Weakly correlated
90 ZNF274 1 99.0 Weakly correlated
91 ZNF284 1 43.0 Weakly correlated
92 ZNF286A 1 160.0 Weakly correlated
93 ZNF347 1 43.0 Weakly correlated
94 ZNF354C 1 99.0 Weakly correlated
95 ZNF43 1 43.0 Weakly correlated
96 ZNF441 1 43.0 Weakly correlated
97 ZNF446 1 94.0 Weakly correlated
98 ZNF461 1 99.0 Weakly correlated
99 ZNF470 1 99.0 Weakly correlated
100 ZNF485 1 94.0 Weakly correlated
101 ZNF500 1 160.0 Weakly correlated
102 ZNF517 1 94.0 Weakly correlated
103 ZNF529 1 99.0 Weakly correlated
104 ZNF544 1 0.0 Moderately correlated
105 ZNF556 1 94.0 Weakly correlated
106 ZNF557 1 15.2 Weakly correlated
107 ZNF561 1 43.0 Weakly correlated
108 ZNF568 1 99.0 Weakly correlated
109 ZNF569 1 99.0 Weakly correlated
110 ZNF578 1 15.2 Weakly correlated
111 ZNF57 1 28.9 Weakly correlated
112 ZNF585A 1 99.0 Weakly correlated
113 ZNF587B 1 8.6 Highly correlated
114 ZNF587 1 28.9 Weakly correlated
115 ZNF599 1 99.0 Weakly correlated
116 ZNF607 1 43.0 Weakly correlated
117 ZNF624 1 99.0 Weakly correlated
118 ZNF630 1 94.0 Weakly correlated
119 ZNF665 1 28.9 Weakly correlated
120 ZNF66 1 0.0 Moderately correlated
121 ZNF671 1 94.0 Weakly correlated
122 ZNF674 1 99.0 Weakly correlated
123 ZNF688 1 160.0 Weakly correlated
124 ZNF699 1 99.0 Weakly correlated
125 ZNF700 1 28.9 Weakly correlated
126 ZNF705E 1 0.0 Moderately correlated
127 ZNF707 1 74.0 Weakly correlated
128 ZNF709 1 87.0 Weakly correlated
129 ZNF717 1 0.0 Moderately correlated
130 ZNF718 1 19.6 Weakly correlated
131 ZNF726 1 28.9 Weakly correlated
132 ZNF727 1 19.6 Weakly correlated
133 ZNF729 1 8.6 Highly correlated
134 ZNF730 1 19.6 Weakly correlated
135 ZNF732 1 28.9 Weakly correlated
136 ZNF75D 1 94.0 Weakly correlated
137 ZNF761 1 19.6 Weakly correlated
138 ZNF763 1 15.2 Weakly correlated
139 ZNF773 1 94.0 Weakly correlated
140 ZNF77 1 87.0 Weakly correlated
141 ZNF790 1 99.0 Weakly correlated
142 ZNF813 1 28.9 Weakly correlated
143 ZNF836 1 43.0 Weakly correlated
144 ZNF845 1 28.9 Weakly correlated
145 ZNF850 1 28.9 Weakly correlated
146 ZNF852 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 48 99.0 Weakly correlated
2 ZNF649 30 28.9 Weakly correlated
3 ZNF486 30 8.6 Highly correlated
4 ZNF84 26 99.0 Weakly correlated
5 ZNF141 26 43.0 Weakly correlated
6 ZNF92 11 28.9 Weakly correlated
7 ZNF91 8 6.0 Moderately correlated
8 ZNF317 7 99.0 Weakly correlated
9 ZNF93 7 8.6 Highly correlated
10 ZNF490 7 43.0 Weakly correlated
11 ZNF28 6 28.9 Weakly correlated
12 ZNF136 6 74.0 Weakly correlated
13 ZNF765 4 8.6 Highly correlated
14 ZNF701 3 28.9 Weakly correlated
15 ZNF735 3 28.9 Weakly correlated
16 ZNF534 3 19.6 Weakly correlated
17 ZNF425 3 94.0 Weakly correlated
18 ZNF343 2 74.0 Weakly correlated
19 ZNF251 2 94.0 Weakly correlated
20 ZNF17 2 69.0 Weakly correlated
21 ZFP57 2 87.0 Weakly correlated
22 ZNF263 2 180.0 Weakly correlated
23 ZNF677 2 99.0 Weakly correlated
24 ZNF8 2 99.0 Weakly correlated
25 ZNF793 2 99.0 Weakly correlated
26 ZNF559 2 74.0 Weakly correlated
27 ZNF679 2 28.9 Weakly correlated
28 ZNF560 2 43.0 Weakly correlated
29 ZNF705D 1 28.9 Weakly correlated
30 ZNF160 1 74.0 Weakly correlated
31 ZNF528 1 43.0 Weakly correlated
32 ZNF729 1 8.6 Highly correlated
33 ZNF101 1 43.0 Weakly correlated
34 ZNF705B 1 28.9 Weakly correlated
35 ZNF394 1 99.0 Weakly correlated
36 ZNF75D 1 94.0 Weakly correlated
37 ZNF727 1 19.6 Weakly correlated
38 ZNF441 1 43.0 Weakly correlated
39 ZKSCAN8 1 160.0 Weakly correlated
40 ZNF587 1 28.9 Weakly correlated
41 ZNF485 1 94.0 Weakly correlated
42 ZNF429 1 28.9 Weakly correlated
43 ZNF33A 1 99.0 Weakly correlated
44 ZNF2 1 99.0 Weakly correlated
45 ZNF18 1 160.0 Weakly correlated
46 ZNF471 1 94.0 Weakly correlated
47 ZKSCAN1 1 160.0 Weakly correlated
48 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF141 43.0 Weakly correlated
2 ZNF486 8.6 Highly correlated
3 ZNF84 99.0 Weakly correlated
4 ZNF92 28.9 Weakly correlated