ZRdb KZFP & Repeats
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LTR_HUERS-P3B

  • Name
    HUERS-P3B
  • Repbase
    HUERS-P3B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000217
Description :

HUERS-P3b is associated with long terminal repeats LTR9, LTR9B, andLTR25 (not inclusive).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttttggtgcatgggccggaaaaccaaggtacaacattcatcggagtggtgagtatggagcgaacctcaaantctgtcctttaatctcgaggctctcggcctccattttagaaccaaatcaaacgggcccccttcagccntntaaaaacgattagcgtnggctgccgccctaaagacttgggggnnaggcttgctggggagaacatggagaatcccccagtacccacgggttgctgggcatattggccatgtttgaaccagcttcctttcacggaggacttagccatcgcgtggggctggaagaagtcctggggcaactgaggatttctggccggggcacnccccggcgttatccaaaggcttctggactgacccagcctccgacngccgggtgtcggcaaaggatctccagctatcctgtcgcnaaactttcctcctttctctatccgcggtctcttacctctctctgtgtgtgcaatgtgcgggaanttttacagttcagggaaancagtcctgttaggnaagatcagcgaatcacggcagncggggatatagctcaangggaaggcgtctttgtgattttctaggaacagagccccccanccccnccacagtgagcgtctctctctgcccttggtctggagagcacatggcatttccaggtcnctctctgcccttggtctggagagcacatggcatttcnaggtctctctncccttggtctggagagcacatggcatntcaaggtctctctctgcccttngtctggcgagcacatggtatttctaagccacctagtgggaataggaatcctctccatgaggcacattgtcggtcctttgcggaacactncagcttccaattctccctttttgcgcccctctactgctgcttctgtgaacgggaaaactctgccttcaacagttaggagtaaaatgtcctccgnagccaaattttagtctcgatactgtcccatcagcaggaaaacggccattcggtccctacgttcttttaaggcacctattctgtctccaattaaaacggtacttaattagtaagggganttttaagtccggaagttaaccggaaccattcttctaagggtaaatgctttagcacgggccataatagcaggatatagagttcaatctagcacactccctccattaaaggggccttgcccaattacatagtctttcccgagatccatttttcgggaggcacgcaggtcacacaagtctaggaagtcaaagggaaatcanaggcggaggactagactgcntgggtanagcgtgactaaanaacttagttcctctggttccatggcttggagggtcacgcctgcaaccatgggcggcacatttaacanggtgccgggaccccggaaccaacggagggaaaacagtnggggggacgccccctactgtcttcctctccaccctgggtcacataccgaaaggaaggagactaaaaggacgcctttattctcacttctctttctagatgggtaacagatcatcttcagcntgcactcctctggagtgcattctgaagcactgggactcctttgaccccgagactttgaagaaaaagcggctcattttcttttgcacaagggcatggcctttttactagacctttgcaacgttgcaaaatcaacccagctcttttagcagtcatatcgggcaggcccanagagaataattccccaaaattagagaagcaacttccaggggaaccatctgaggatcccccttatttggggccccttcaagttcccttctcattacaggaccttaggcaaataaagggagacttaggccgattttctgacgaccctgataggtatatagaagctttccaaaatttaactcaggtatttgacctcncatggagggatgttatgctgctcctaagccaaaccctaactgcagctgaaaaacaggcagctctgcaggcagcagagaatttcggagatgagcaatatgtctcctatagtaggccaaaagggaaaagagaaaatagggaaggcgaagaaataggggaaacaccattcccaataggaagagaggcagtacctcttgacaaccctaattggaaccccagacttttctatggtgtttttccttctttcgcggtttaaaatggcttctatcttcttttataatgttcctccaaactgggaaaagttaatttcccaaaccttaaactgnttggcttagaattgagctcgggggaagggaacccagaagcccgacatgccggcaaaagggtaaaagttttttaccagtcgggcttttggcctccctctccctgtgcaaaccggtaaaaggaatgataaggatcactgtttatattctctgtaaagttttaattaatgaaaaaggatttgtgaggttggtcttaagctgtagccaatctggtgtgctttgcgtgtctttctgtatggttctgtcaaaaggaagggtaccttaggntaggatgcaggcccaggaccccataagcccgctgttcaagccagcccagcaaantggtcagtaacaaacttngctgcaggcctccatcttgtttcatgtccttgggagcatgacctgtaaccacgtggcaatactttgttttagtctccgccattttacaatggtggccgtnttctngngctcgnncgnnnnncgnnnnnnnnnnnnnnnnnncgncgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgnnnnccgnnnnnnnnnnnnnnncgnnnnncgncgnnnnnnnnnnnnnnnnnnnnnnnnncgnnnnnnnncgcgnnnnncccgncgcgnnncgnnnnncgncgnnnccgnnnnnnnnnnncgncgnnnnnnncgnnnnccgncgnnnnnncgncgnccgcgnnnncgncgnnnnnnnnnnnncgnnnncgnnnnccgnnnnnnnnncgncgnnnnnncgnnnnnnnccgncgcgcgnnnnncgnnncgnnnnnnncgnnnncgnnnnnnnncgnnnnnnnnnncgcgnnnncgcgncgaccgnttcaaaagctgcctatcacccctttgaaaatacctcgtacactcgcggttaagtcataacctaattaaggcttgttggtttcacctgtgaggttactttttgtaaagttcaaaagccgaaaatcttaactgcttggcgtggctaaagtcgagtaacaagggatttaaaaggattttcttaaagagtgctcagcttaattaaaagtggatattcaagttataggtatatttaaaaggcctttatgtttttctcttcttggatcttgtttttctggaaaaaggcttttcttctcagtcgactgaattattttctccattttttgtcttgccactcttaatgcacgcatgagaggccctaagataacttctggtagcntgggactccttgggaaaaacagaggaggcgccacagaccccgttttgggaaaaaacccctgttttcctcatgaaaccccaggaattaaaagcagatagntccctctcaaaatcaaaggctctgttctgttttgcattgtgttatctgacggttttgagttttgggggtatcagaattacttcgcattatgagagagctttggtgtgtaataactaggtaggaaatacactttaagggatggctaatagtagttataaatcagagaagcatgctcttggccacctgaaagatatggaaacatccccaccccccactgagagatgagactcccatgggggatgggctgattacaaaataagccgattggctttgggttgccttgcaatgaaatgcatggtagaagcactgcactgtcttctcccatagtatctccctccttttggggatccaagatccagtataaaatggcacccttaattttgggatctgtctttgccttcagctgtgcctgcttattaggccctagaaatgcatgctttcctggccctgttcctccaagggctccaccctgaagccagtaatccaattaagaaactggcaaatgnaaaaatcttacaagtgctgaatcttctgtctgtggtcgctatatatgtgttgtgtgtaatgtctataaaaagagctctaattgattggcttaaagaaaaataagcgcttaaatcaaatattttttagttcacgtgactttaatctttaagaaataaaaatagtcttaaggattattggtaaaatgcaagtgtcgtcaaaatgcaaataggtggtctaaatcatacaacttagatactaggtttgctaaatgttccaaggttgtatnactgcctgctttacagataggtaaggcctgggacacgtggagttagatgctggaaagagtcagaccttatctgcacttctgtctgggtcctaggctccacacctggtacataattaaaatcgcttactaaccaggtttttcaccaaagtaaaagttgctaagagttaacagtgcaacatgtatttgagatcactaaacagttttacatgcaaggcgtataaaaacagtaaaatgtgttttttagtaaaagattataagaaagcatggaaatgtaaattttgcccagggataagggattatcttaaattngataagataaagctaaaggtttaagcaagttgtggaagattgtaaaaattaatcttgcaaaaaatgtgtaaacattaactaaattcaaaagggtatatatggtcttttcataaattgagcattgaaataaaagcacagcaaggntgtcttaagacgctaatctgccctttagcaaaagggttataaaaggtttgtaaagatttcacctcatggtcaaattggttaagattagatggaatcgtctataaggtttcattnaaacgaattggggttaacattaataaactaatgcaagggtaaaatttggctttgaacaggattttcatgtaatagtaaaggctaatgaaaggtttttgccttttgagtcatcattttggcaaaataaataatttatggcaatctggaattctatttcataacatcaagtgttttaaacctctaacatttaacaggcntcccaaaatcaaacttcaagtttcaaaattgtctttcctgatgcctggctttctggatggttcagagggcccctgaaacatccagaaaagaggtaaacaggattatttgacatgtttagtcacatgagattgccaaaatgatgtccaatcttctttaagttatattttggtgaataatactaatatatgttccaaaattgtatgggatttctaaaattctaatgtctaagtatatgctatcaatcataattaagggtaaagttattgtaaaccacggagataactaaacttctttgtcagtcatgtttttaactgtaactaccctggaaattttgtcattcgcagacaattgttgtcttgctttgttccttctcaaaagatggtttataatcaagctatattaaggactttaacaggtgttctcaaatgcaggtttttaatagctttgaagattgtaacattggaatagagaaagaacgtacgggactcatgaagaactganatgttcacgaatatcaagcaaaacaagagttaactaaatggactgcactcagaaagttaaagcaacctttttgacttttgcttggaatattgctgatccttgttttgtttttcagagtcaaggaaacttattttgaactatttacggcctttaataattgagtaaggtatactcctgtgaacaaaatttggagcatgtttgtttctctctgcctggttcctctagaatttggaaactatctgtgagtactcttaacttatggcaatatagttgtttgcatcagtgcaataagaatccatttttctttntcaacaggacacaattggaaaaactggttattttaccaaggctttgactggaagggtgtgtttccctttaaggaatcaagcttgacatgcagagccaataaaagccccttggggagaactggcctcataccttgtctacacagtccccgcacagggttcctaacctgtggtcagtaaagaatgtcactttctaacaggtccgggagctccgagtttatcttgggacctcaagaggagaggatcacccaactcacaggtatttgaggatacaaacccatggctgggctcggctttaaaaggtcttatctgagattccttgtggaacagagttccatcaaagccaatccaaaaggcctatgtagaaataaccattcttgctgcactttatgcaaataatcaggccaagtataagactaaagtttattctacgaacaacacagtcctatcataatttgtttttaccaaaaatgaggactggagagagaaattgtgctccaaagcttatcatacatttgtcattaaatcctagtctcattaattgtttttaagctttttgcctacattttagactaaccctgcttattcctgtgaatcaagtggtgatctcctgcagcttggaagaaacaaaaagggatgggtaacgtaaaaatctggatcaatatgctagttctgggcaattatcctgcaaattctgccaggtaatgaaagtgagtnnnnagggtgcccataacccggaggtttctttgtttgggaaaataaaaccaaggaacttcatagacccccaaagggaaattctantatcttggcaagtaaaattttagatggaaattatctactacaccacacttgcgggaattgctatactcactctactatttgcaatagggttatacacggtagcaccttctaactgaaatattggacagagagtttccattgctgtagtattttgcttaattattatccttatagcagggataatagttaccgacaaaaaggaagcatgaaagttttactatcactgagtctgctaggactttttattgggtttagtaatgcanttttaaatgaaacatgctgcttttggattaacacctctagtaaagtagaggaaaatctacaggtacttaaaaatcaaatcaaaattattgacaggctcagggaaaatgccggcttcagccccgggtggctacaatccctctttaatgaattccagtcttctttatggaattggttaacccctttattaagccctctcttgcttatatgtcttgtattgatatttggaccctgtatactcaatactgtaactcaaattgtttcttctcgcctagaagcaatcaaactccaaatggtgctgcaaactgaaccacacgccattcttccgaggacccttagatcgacccaggaggagccctagctgctgttccccattcgacgccccttttcagcaggaagtagccagaaagagtcgtcgcccaaaccccctaacagcagttagtgtggcatctccacaggggggaatgntgc
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 73 8.6 Weakly correlated
2 ZNF382 67 99.0 Weakly correlated
3 ZNF2 59 99.0 Weakly correlated
4 ZNF766 48 43.0 Highly correlated
5 ZNF141 39 43.0 Highly correlated
6 ZFP37 34 99.0 Weakly correlated
7 ZNF680 31 28.9 Moderately correlated
8 ZKSCAN1 23 160.0 Weakly correlated
9 ZNF394 21 99.0 Weakly correlated
10 ZFP69B 20 99.0 Weakly correlated
11 ZNF263 19 180.0 Weakly correlated
12 ZNF595 16 43.0 Highly correlated
13 ZNF616 16 43.0 Highly correlated
14 ZNF610 15 28.9 Moderately correlated
15 ZNF43 14 43.0 Highly correlated
16 ZNF18 14 160.0 Weakly correlated
17 ZNF197 14 99.0 Weakly correlated
18 ZNF589 13 28.9 Moderately correlated
19 ZNF324 13 99.0 Weakly correlated
20 ZNF92 12 28.9 Moderately correlated
21 ZNF101 12 43.0 Highly correlated
22 ZNF175 11 94.0 Weakly correlated
23 ZNF479 10 6.4 Weakly correlated
24 ZNF506 9 28.9 Moderately correlated
25 ZNF320 7 28.9 Moderately correlated
26 ZKSCAN8 7 160.0 Weakly correlated
27 ZNF534 7 19.6 Weakly correlated
28 ZNF792 7 94.0 Weakly correlated
29 ZNF547 6 74.0 Weakly correlated
30 ZNF528 6 43.0 Highly correlated
31 ZNF558 6 99.0 Weakly correlated
32 ZNF584 6 99.0 Weakly correlated
33 ZNF641 6 99.0 Weakly correlated
34 ZNF730 6 19.6 Weakly correlated
35 ZNF701 5 28.9 Moderately correlated
36 ZNF554 5 99.0 Weakly correlated
37 ZNF705B 5 28.9 Moderately correlated
38 ZFP57 4 87.0 Weakly correlated
39 ZIM3 4 87.0 Weakly correlated
40 ZNF669 4 43.0 Highly correlated
41 ZNF85 4 28.9 Moderately correlated
42 ZNF695 3 28.9 Moderately correlated
43 ZNF585B 3 99.0 Weakly correlated
44 ZNF786 3 99.0 Weakly correlated
45 ZNF230 3 28.9 Moderately correlated
46 ZNF274 3 99.0 Weakly correlated
47 ZNF793 3 99.0 Weakly correlated
48 ZNF317 3 99.0 Weakly correlated
49 ZNF169 3 94.0 Weakly correlated
50 ZNF671 2 94.0 Weakly correlated
51 ZNF222 2 43.0 Highly correlated
52 ZNF729 2 8.6 Weakly correlated
53 ZKSCAN4 2 99.0 Weakly correlated
54 ZNF607 2 43.0 Highly correlated
55 ZNF597 2 94.0 Weakly correlated
56 ZNF723 2 15.2 Weakly correlated
57 ZNF215 2 99.0 Weakly correlated
58 ZNF596 2 94.0 Weakly correlated
59 ZKSCAN5 2 160.0 Weakly correlated
60 ZNF850 2 28.9 Moderately correlated
61 ZNF251 2 94.0 Weakly correlated
62 ZNF746 2 99.0 Weakly correlated
63 ZNF213 2 180.0 Weakly correlated
64 ZNF75D 2 94.0 Weakly correlated
65 ZNF562 2 28.9 Moderately correlated
66 ZNF256 2 74.0 Weakly correlated
67 ZNF549 2 87.0 Weakly correlated
68 ZNF20 2 43.0 Highly correlated
69 ZNF284 2 43.0 Highly correlated
70 ZNF468 2 28.9 Moderately correlated
71 ZNF160 2 74.0 Weakly correlated
72 ZNF91 1 6.0 Weakly correlated
73 ZNF8 1 99.0 Weakly correlated
74 ZNF816 1 28.9 Moderately correlated
75 ZNF823 1 43.0 Highly correlated
76 ZNF84 1 99.0 Weakly correlated
77 ZFP28 1 99.0 Weakly correlated
78 ZNF487 1 28.9 Moderately correlated
79 ZNF254 1 43.0 Highly correlated
80 ZNF257 1 0.0 Weakly correlated
81 ZNF28 1 28.9 Moderately correlated
82 ZNF30 1 94.0 Weakly correlated
83 ZNF140 1 99.0 Weakly correlated
84 ZNF425 1 94.0 Weakly correlated
85 ZNF433 1 43.0 Highly correlated
86 ZNF133 1 99.0 Weakly correlated
87 ZIK1 1 87.0 Weakly correlated
88 ZNF544 1 0.0 Weakly correlated
89 ZNF563 1 28.9 Moderately correlated
90 ZNF578 1 15.2 Weakly correlated
91 ZNF583 1 99.0 Weakly correlated
92 ZNF586 1 43.0 Highly correlated
93 ZNF674 1 99.0 Weakly correlated
94 ZNF677 1 99.0 Weakly correlated
95 ZNF679 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF141 21 43.0 Highly correlated
2 ZNF595 16 43.0 Highly correlated
3 ZNF43 15 43.0 Highly correlated
4 ZNF2 15 99.0 Weakly correlated
5 ZNF616 12 43.0 Highly correlated
6 ZNF766 7 43.0 Highly correlated
7 ZNF479 5 6.4 Weakly correlated
8 ZNF534 4 19.6 Weakly correlated
9 ZNF669 3 43.0 Highly correlated
10 ZNF85 3 28.9 Moderately correlated
11 ZNF506 3 28.9 Moderately correlated
12 ZNF793 2 99.0 Weakly correlated
13 ZNF215 2 99.0 Weakly correlated
14 ZNF320 2 28.9 Moderately correlated
15 ZNF382 2 99.0 Weakly correlated
16 ZNF610 2 28.9 Moderately correlated
17 ZNF468 2 28.9 Moderately correlated
18 ZNF746 2 99.0 Weakly correlated
19 ZNF596 2 94.0 Weakly correlated
20 ZKSCAN5 2 160.0 Weakly correlated
21 ZNF213 2 180.0 Weakly correlated
22 ZNF680 2 28.9 Moderately correlated
23 ZNF20 2 43.0 Highly correlated
24 ZNF169 2 94.0 Weakly correlated
25 ZNF589 1 28.9 Moderately correlated
26 ZNF705B 1 28.9 Moderately correlated
27 ZNF222 1 43.0 Highly correlated
28 ZNF263 1 180.0 Weakly correlated
29 ZNF433 1 43.0 Highly correlated
30 ZNF671 1 94.0 Weakly correlated
31 ZNF816 1 28.9 Moderately correlated
32 ZNF730 1 19.6 Weakly correlated
33 ZIM3 1 87.0 Weakly correlated
34 ZKSCAN1 1 160.0 Weakly correlated
35 ZNF251 1 94.0 Weakly correlated
36 ZNF254 1 43.0 Highly correlated
37 ZNF257 1 0.0 Weakly correlated
38 ZNF528 1 43.0 Highly correlated
39 ZNF583 1 99.0 Weakly correlated
40 ZNF197 1 99.0 Weakly correlated
41 ZNF558 1 99.0 Weakly correlated
42 ZKSCAN4 1 99.0 Weakly correlated
43 ZNF585B 1 99.0 Weakly correlated
44 ZNF101 1 43.0 Highly correlated
45 ZFP57 1 87.0 Weakly correlated
46 ZNF544 1 0.0 Weakly correlated
47 ZNF584 1 99.0 Weakly correlated
48 ZNF723 1 15.2 Weakly correlated
49 ZNF230 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF141 43.0 Highly correlated
2 ZNF2 99.0 Weakly correlated
3 ZNF595 43.0 Highly correlated
4 ZNF766 43.0 Highly correlated