ZRdb KZFP & Repeats
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LTR_HUERS-P3

  • Name
    HUERS-P3
  • Repbase
    HUERS-P3
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000216
Description :

HUERS-P3 contains full-length gag and pol ORFs, and is associated withLTR9 long terminal repeats. Many apparently non-autonomous elementscontaining differing amounts of MER4-type and HUERS-P3-like internalsequences exist (see e.g. HUERS-P3b), suggesting that HUERS-P3 was oneof the engines for the distribution of the MER4-group elements.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttttggggnctcgtccgggataccaaggtacaacattcatcgaaacggtgagtagaggagcggactccaactctgtcctttcatttcgaggctctcntggcctccattttagaaccaaatcaaaccaatancgggcncccntcagccatttaaaaacgattagcgtggctgccagccttaaagactcgggngacaggcttgctggggagaacatggagaatcccccagtacccacgggttgctgggcatgttggccatgtttgaaccagcttcctttcacggaggacttagccgtcgcgtggggctggaagaggtcctggagcaactgaggatttctggccggggctaccccccggtgttatccgaaggcttctggactgaccccagcctccgaccgcccgatggggtgtcggcaacaggatctccaactttccttttnctatcgtaatttcctcctttcctgtctcgaccgccatgtctcctatcctctctgtgtatgcaatgtgcgggaanttttacagttcagggaagtaatcctgttnggcaagatcagggaatgccgtagtaaccggggatatagctcaagggaaggcgtctttgtgattttctaggaacagagggcccccncncccccagtgagcgtctctctctgcccttggtctggagagcacatggcatttccaggtctctctctgcccttggtctggagagcacatggcatntcaaggtcactgcccttggtctggagagcacatggtatttcnaggccaacagcgccacctagtggaataggaatcctctccatgaggcacattgtcggtcctttgccgaaacactctagcttcccaattctcccccctttttgcgcctctctactagaaaccaggctttatgccgcttctgtgaacgggaaaactctgccttcaacaattaggagtaaaatgtcctccgnagccaaattttagtctcgatactgtcccatcagcaggaaaacggccattcggtccctacgttcttttaaggcacctattctgcctccaattaaaacggtacttaattagtaaggggattttaagtccggaagttaaccggaaccatttttctctaagggtaaatgctttagcacgggccataatagcaggatatagagctcaatccagcacactccctccattaaaggggccttgcccaaatgcaactgttacatagtctctcccgagatccatttttcggggagccacgcaggtcacacaagtctaggaagtcaaagggaaatcacaggcagaggactagggccgcatgggtgagcgtgactagccccancgcttagttcctctggttccatggcttggagggtcacgcctgcaaccatgggcggcacatttaacagggtgccgggacccaggaaccanggagggaaaacagcnggggggacgcccccnactgtcttcctctccaccctgggtcacaccgaaaggaaggagactaaagggacgcctttnttctcgcttctctttctagatgggtaacagaccatcttcggcctgcactcctctggagtgcattctgaagcactgggactcctttgaccccgagactttgaagaaaaagcggctcattttcttttgcacaagggcatggccttcttaccatcttggggacggacaaacctggcctgctgaggggagccttgattttaatattatccaacaattagatcttttctgcagacgggagggcaaatggtccgaggtccctatgtacaggctttctttgccctgcgagacaacccagacctttgcaagcgttgcacaatcgacccagctcttttagcagtcatatcaggcaggcccanagggaataattccccaaagctagaaaagcagnttccgggggagcnatctgaggcagctattgagtgtcccagcccttccagtcccccttatccggggccccctccaaccgcgccatcagctcctccagctccaccatctccaaaattccccactcccccancttcactcttacccctacaggaaatgcccgatggaggtggtgccactagggttcaagttcccttctcattacaggaccttaggcaaataaagggagacttaggccgattttctgacgaccccgataggtatatagaagctttccaaaatttaactcaggtgtttgacctcacatggagggatgttatgctgctcctaagccaaaccctaaccgcagctgaaaagcaggcagctctgcaggcagcagagaanttcggagatgagcaacatgtctcctatagtagaccaaaaaggaaaagaggagatagggaaggcgaagaaatagcggaaacaccattcccaataggaagggaagcagttcctcttgacaaccctgattggaaccccaataactccgcagatgaatggaaaaggaagcactttttaatgtgcatattagagggcctacgaagaactagggccaaacctcttaattactctaaactgtccatgatagaccaaaagccagatgagaatcccgcagcctttatggaaaggctgagagaggcactaataaaacacacctccttatcccctgattcagtcgagggacagctcatcctaaaggacaagtttattacacaggcagctcccgatattagaaggaaactacagaagcaggctataggaccagatagcaccttggagaacctcctgagggtggccacttcggtcttttataatagggaccaggaggaggcccaagagaaagagaggaagcncaagagaaggacagaggctctagtagcngctttgcaggcttgcaaagtccaggatccccgaggtgcatccgctagttgctatcggtgtggcaagccagggcactttaagaaggagtgcccaggcagcaagangaagccacctcgaccctgtccagcctgtggcggagaccactggagatcgaactgcccccggagacggaggtcactgggttcagaaccagtctcacagatggtccagcaggactgatgggtcccggggctcaaacccccggctccagcggctcaaactgccattacagcacaggagccccgggtgattctggaaattgaaggaaggaaggtagacctccttctggacactggagccagtctctctcttctcctctctaatccaggcctcccctcttcccatagcacgaccgtaaggggcgtctcaggaaaaactctaatccaatatttttctcaaccccttagttgcagttggggggacctatatttacacatgcctttttaatcatgcctgaaagtcccactcctttattaggtagagacattttagctcgcatgggggccagcatccttatagccccaggacaaactctttgtctccccctggtggaagctaatattaatccagaagtgtgggcaactcaaggaagaataggtcgagctataaccgctaggccagtccggatccatcttaaggatcccacttcttttcctaaccagagacaatatcccctaaagccagaggctaggaaagggctagaagccattattaataacctgaagatgcagggcctcctcaaaccctgtaacagcccctgcaacaccccaatattaggagtgcaaaaacccaatggggaatggagactagttcaggacctccgcctcattaatgaggccgtagtcccaatccatccggtggtccctaatccctataccttgctaacccaaatacctgagggaactaaatggttcacagtcctagatctaaaggatgcctttttctgcataccgttacatcctgactctcaatacctgtttgccttcgaagatccctccggccaaaccgcccagttaacatggacggtgctgcctcagggatttcgagatagtcctcacttgtttggacaggcactgtcaaaggacctctctgagttttcccatcctcaggtcagggtcttgcaatatgtggatgacatnctgctctgtgccccaactgaggaagcttctcaggaaggcactgaagctcttcttaatttcttagctaacagaggatataaggtttcaaaatccaaggcccagctttgccaaacctcagtgaagtacctgggtttagtgctgtctgaggggaccagagcattaggggaagaaaggattaagcccatttcctccttccccctccccaaaaccctcaagcaactaagaggattttggggcattacaggattttgcaggctatggatacctgggtacggtgagatagctcgtcccttatatcacctcataaaagaaactcaggcggctaaaactcatctcctaacctgggaacctgaagctcaaaaggcctttaaccagctaaagcaagccttgcttaaggcaccagctctcagccttcccgtagggagggccttcaatctntatgtatcagaaaggaagggaatggccctgggagttttaacncaggcccgaggaccagctcaacagccagtgggttacctgagtaaggaacttgatttggtggctaaaggatggccagcatgcctccgagccattgccgcggtggccctactggtcccagaagcctccaaattaaccctgggaaatgacttaactgtttacaccccacataatgtggcaggattactgtcctctagggggagcctttggctaacagacagccggctccttaaatatcaggctctgctgttagagggttccacnatccagttaaaaacttgttctcgcctaaacccagccactttcctccccgaggaaactggggaacctgaacatgactgtgaacaagtcgtggtacagacctatgcagccagggaggatctcagggaaactcccctagaaaatccagactggaccctcttcacggatgggagctcctttgtagagcaaggagtccgtaaggcaggatangcagtagtcactctaaataacgtcattgaaagtgcgtctctctctccaggcacaagcgctcaattagctgagctaatagctcttacaagagcacttgaattaagcaagggaaaggtagctaacatttacactgactccaagtatgctttcttagttctccatgctcatgctgccatttggaaggaaagacattttcttaccactaatggatctcctataaaatatcaccaggaaattaacaggttattatcctcagttttccttccacgagaaatagcagtgatgcattgtaggggacatcaaaagggaacagatgaagtagccgaaggaaataggttagctgatcaggcagctaagtcagcggcaaggaagcctcaaggcatcaacacacttcaagcccctctaatctgggaaggctccataagagaaattaaacctcagtactcccctgcagaaatagaatgggccacttctcgagggtatactttccagccctcaggatggctacagtcagaggatggcaaactccacttgccagcctccagccaatggaaagtccttaaaatccttcaccaagcttttcacttgggaaaggataaaacttatcaatgtgcccagagattgttttcaggagagaacttactaaaaacagtcaaacaggttgttaatgcttgtgaagtctgtcttaaaaataatcccctnaacaggcggctccttcctcctcaaacccaaaggatgggaagctatccaggggaggactggcagatagacttcacccacatgccaaagacgaagggcatccaatacctcctggtatgggtagatactttcactaactgggtagaagcatttccatgccgtacagaaaaggcctctgaggtaataaaagtgttagttaatgaaataactccccgctttggtctacctaagtacctccaaagtgacaacggcccctcatttaaggcagccgtcacacagggggtctcaaaggcactaggatacagtatcatctccattggcttggagaccccagtcctcaggaaaggtagagaagacaaatgatattatcaaaagacacctcagaaaactgtcccaagaaactcaccttccttgggtcactcttcttcccatggccttactgcgggtaagaaataccccttcaaagttaggtctnagccctttcgagatgctgtatggatggcctttccttaccaatgattttctattagaccaggaaacctctgaattggttaagcatgtaacctctctggctcacttccaacaggaattaacacaactagcagaagcccaaccccaggaaataggaccacctttatttaacccaggagatttggtattggtgaaagctctcccttctctctctccttccctaagcccaagctgggagggccctacactgttcttctttcaaccccctcggcagtaaaagttacaggaatcgactcctggatacatcacactcgagtcaaagcctggaaagctgagggagcaacccctgacagcccagaggaacgtcctgaatatcaatgtgaagaaataggagatcttaagctgaaaatcataaaagataagtaactgagtgagggctactcatcttactcagtcccacccctacctcaccagatacttttngtcatttctacctttcctctcgagattcgccgccaaatattagaacttctttttgacgcatatttgcagggagattttaattatcatgggattgcatttgtaacttcgtagacccccaaagggaaatnctatatcttggcgagtaaaattttagatggaaattatttactacgccacncttgcgggaattgttatactcactctactatttgcagtaggactatacactgtggcacccncaangtggaattccggncgnaaaattccaattgctgtagtattttgcctaattattatccttatagcaggantaatagttacaganaagaagtaaacatgaaagttttactatcactgagtctgctaggactttttattgggtttggtaatacgtcacaccctttagctcctacaatatcagccatggcccatttgtacaacaagactaattgctgggtctgtcctgagcggtttgctcagttcaataacactaaggaacctcncaatgacccggaacttaccgtcttaggattccctttgttagctttacctttaacccttaaagacttatcaggcataaatgggacatggtatgggagcactttcaactgggtaactaactcctctcaggagaacactccgcccccagtgccaaagaacactctccccaaagataagcttcacaccctcaggctgggaaaagttgaccgggtaatagcaaatgcctccctctgctttaaaagcagcggggaaggaccatacttgggagatctcaaatattgtaacacgtcacacttgtaattgctgatagttcaaagatttggggaggaaagcgcaacaagggtgatctaaaaggnnnatcagaagccctacgtgggggggctttcagaatctagcctctccttctggttggaagtcccgatgggagtggcatgctctaagtaaccaccttgacgcgcgnnnntataatgtaaagaataacacatgggcctttccaaacatgccccctcatggaattccagacccttgtatgatgtttgctaatagtagcggcctacaaatctgtgggcgaactggagacatctggaccgacagcccttgccacaaggatcatctgagatattggccagggcatattatgtccctaatttttcgaaactccatttgtcaggtggacccttctcacttggcatgtcaaattccaaacggcatcgtaaatgactatcctgaatatggatatccctatcccaaggatgcccctattatatgtaaagaggggaaacttctaagatatgagaaaaatctgccggtgtctctcacaagccacaacttagaaccgtcccttcaaggaacagggctatatttcctttgtggctcctggntacacttaatcctcccnaggcactggaagggaacctgtactatagtagcagtagttcccgacctattatttttaaattctactgagatggcagcatcatctggggacatccctaacttaggctcttttctagaaactgcactatctcggatacgccggacaaagagatctatcatttccatgccctcatatggagatttaactgaaagggnagactggggagggcatgcacatgacaatcccatcttagaaaaaccatggatgggaaattctatagccagaggcctattctggtttgctggcatccctctccttgaaagatcagtacttaatatttccattatgatgcaacgaggatggaaggcaacngtaggagccatagaggcacaacagcaatccatagactctttagcctcagtagtagcacaaaatagacgggccctagatgtccttacagctgaagtagggggtacctgtgcacttttaaatgaaacatgctgcttctggatcaacacctctagtcaagtagaggaaaacctacaggtgcttaaagatcaaatcaaaatcattgacaggctaagagaaaatgcaggcttcagccccgggtggctacaatccctctttaatgaattccagtcttctttatggaattggttagctcctttattaagccccctcttgctcatatgtcttgtattaatatttggaccttgtatactcaatactataactcgaattgtctcttctcgcctagaagcaatcaaactccaaatggtgctgcagacngaaccacgcatggacacgccnttcttccgaggacccttagatcgaccccaggaggagccctagctgctgttccccacacgacgccccttttcagcaggaagtagccagaaagagtcgtcgtccaacaccccctaacagcagttagggttaccnctccngaggggggaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 113 99.0 Weakly correlated
2 ZNF2 75 99.0 Weakly correlated
3 ZNF766 59 43.0 Highly correlated
4 ZNF680 54 28.9 Moderately correlated
5 ZNF486 52 8.6 Weakly correlated
6 ZNF394 50 99.0 Weakly correlated
7 ZNF263 46 180.0 Weakly correlated
8 ZFP37 44 99.0 Weakly correlated
9 ZKSCAN1 44 160.0 Weakly correlated
10 ZNF141 42 43.0 Highly correlated
11 ZNF101 28 43.0 Highly correlated
12 ZNF723 28 15.2 Weakly correlated
13 ZNF18 27 160.0 Weakly correlated
14 ZNF558 24 99.0 Weakly correlated
15 ZNF616 24 43.0 Highly correlated
16 ZNF324 22 99.0 Weakly correlated
17 ZNF92 22 28.9 Moderately correlated
18 ZNF506 22 28.9 Moderately correlated
19 ZNF589 20 28.9 Moderately correlated
20 ZNF479 17 6.4 Weakly correlated
21 ZNF197 17 99.0 Weakly correlated
22 ZNF534 16 19.6 Weakly correlated
23 ZFP69B 15 99.0 Weakly correlated
24 ZNF610 15 28.9 Moderately correlated
25 ZNF584 14 99.0 Weakly correlated
26 ZNF175 14 94.0 Weakly correlated
27 ZNF317 13 99.0 Weakly correlated
28 ZKSCAN8 13 160.0 Weakly correlated
29 ZNF792 12 94.0 Weakly correlated
30 ZNF528 10 43.0 Highly correlated
31 ZNF547 10 74.0 Weakly correlated
32 ZIM3 9 87.0 Weakly correlated
33 ZNF230 8 28.9 Moderately correlated
34 ZNF222 8 43.0 Highly correlated
35 ZNF679 7 28.9 Moderately correlated
36 ZNF549 7 87.0 Weakly correlated
37 ZNF559 7 74.0 Weakly correlated
38 ZNF257 7 0.0 Weakly correlated
39 ZNF641 7 99.0 Weakly correlated
40 ZNF8 6 99.0 Weakly correlated
41 ZNF554 6 99.0 Weakly correlated
42 ZNF793 6 99.0 Weakly correlated
43 ZNF75D 6 94.0 Weakly correlated
44 ZFP57 6 87.0 Weakly correlated
45 ZNF251 5 94.0 Weakly correlated
46 ZNF682 5 28.9 Moderately correlated
47 ZNF816 4 28.9 Moderately correlated
48 ZNF705D 4 28.9 Moderately correlated
49 ZNF28 3 28.9 Moderately correlated
50 ZNF669 3 43.0 Highly correlated
51 ZNF202 3 160.0 Weakly correlated
52 ZNF320 3 28.9 Moderately correlated
53 ZNF695 3 28.9 Moderately correlated
54 ZNF701 3 28.9 Moderately correlated
55 ZNF705B 3 28.9 Moderately correlated
56 ZNF730 3 19.6 Weakly correlated
57 ZNF169 3 94.0 Weakly correlated
58 ZNF441 3 43.0 Highly correlated
59 ZKSCAN5 3 160.0 Weakly correlated
60 ZNF735 2 28.9 Moderately correlated
61 ZNF140 2 99.0 Weakly correlated
62 ZNF84 2 99.0 Weakly correlated
63 ZNF133 2 99.0 Weakly correlated
64 ZNF585A 2 99.0 Weakly correlated
65 ZNF274 2 99.0 Weakly correlated
66 ZNF578 2 15.2 Weakly correlated
67 ZNF44 2 43.0 Highly correlated
68 ZNF468 2 28.9 Moderately correlated
69 ZNF440 2 28.9 Moderately correlated
70 ZNF433 2 43.0 Highly correlated
71 ZNF425 2 94.0 Weakly correlated
72 ZNF582 2 99.0 Weakly correlated
73 ZNF709 1 87.0 Weakly correlated
74 ZNF460 1 74.0 Weakly correlated
75 ZNF284 1 43.0 Highly correlated
76 ZNF471 1 94.0 Weakly correlated
77 ZNF135 1 94.0 Weakly correlated
78 ZNF485 1 94.0 Weakly correlated
79 ZNF786 1 99.0 Weakly correlated
80 ZNF780A 1 43.0 Highly correlated
81 ZNF597 1 94.0 Weakly correlated
82 ZNF182 1 99.0 Weakly correlated
83 ZNF607 1 43.0 Highly correlated
84 ZNF429 1 28.9 Moderately correlated
85 ZNF189 1 99.0 Weakly correlated
86 ZNF718 1 19.6 Weakly correlated
87 ZNF611 1 19.6 Weakly correlated
88 ZNF530 1 28.9 Moderately correlated
89 ZNF283 1 99.0 Weakly correlated
90 ZNF420 1 94.0 Weakly correlated
91 ZNF41 1 99.0 Weakly correlated
92 ZNF684 1 99.0 Weakly correlated
93 ZNF350 1 99.0 Weakly correlated
94 ZNF30 1 94.0 Weakly correlated
95 ZNF248 1 99.0 Weakly correlated
96 ZNF674 1 99.0 Weakly correlated
97 ZNF562 1 28.9 Moderately correlated
98 ZNF563 1 28.9 Moderately correlated
99 ZNF626 1 0.0 Weakly correlated
100 ZNF445 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 23 15.2 Weakly correlated
2 ZNF141 21 43.0 Highly correlated
3 ZNF2 20 99.0 Weakly correlated
4 ZNF479 9 6.4 Weakly correlated
5 ZNF680 7 28.9 Moderately correlated
6 ZNF534 7 19.6 Weakly correlated
7 ZKSCAN1 6 160.0 Weakly correlated
8 ZIM3 5 87.0 Weakly correlated
9 ZNF506 5 28.9 Moderately correlated
10 ZNF616 4 43.0 Highly correlated
11 ZNF175 3 94.0 Weakly correlated
12 ZNF257 3 0.0 Weakly correlated
13 ZNF75D 3 94.0 Weakly correlated
14 ZNF669 2 43.0 Highly correlated
15 ZNF433 2 43.0 Highly correlated
16 ZNF468 2 28.9 Moderately correlated
17 ZNF263 2 180.0 Weakly correlated
18 ZNF816 2 28.9 Moderately correlated
19 ZNF559 2 74.0 Weakly correlated
20 ZNF679 2 28.9 Moderately correlated
21 ZNF589 2 28.9 Moderately correlated
22 ZNF735 2 28.9 Moderately correlated
23 ZNF44 2 43.0 Highly correlated
24 ZNF197 2 99.0 Weakly correlated
25 ZNF766 2 43.0 Highly correlated
26 ZKSCAN5 2 160.0 Weakly correlated
27 ZNF324 2 99.0 Weakly correlated
28 ZNF730 1 19.6 Weakly correlated
29 ZNF8 1 99.0 Weakly correlated
30 ZNF682 1 28.9 Moderately correlated
31 ZKSCAN8 1 160.0 Weakly correlated
32 ZNF101 1 43.0 Highly correlated
33 ZNF440 1 28.9 Moderately correlated
34 ZNF140 1 99.0 Weakly correlated
35 ZNF585A 1 99.0 Weakly correlated
36 ZNF626 1 0.0 Weakly correlated
37 ZNF792 1 94.0 Weakly correlated
38 ZNF674 1 99.0 Weakly correlated
39 ZNF18 1 160.0 Weakly correlated
40 ZNF283 1 99.0 Weakly correlated
41 ZNF485 1 94.0 Weakly correlated
42 ZNF549 1 87.0 Weakly correlated
43 ZNF584 1 99.0 Weakly correlated
44 ZNF382 1 99.0 Weakly correlated
45 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN1 160.0 Weakly correlated
2 ZNF2 99.0 Weakly correlated
3 ZNF680 28.9 Moderately correlated
4 ZNF723 15.2 Weakly correlated