ZRdb KZFP & Repeats
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LTR_HUERS-P2

  • Name
    HUERS-P2
  • Repbase
    HUERS-P2
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000215
Description :

This sequence is associated with LTR1 long terminal repeats. It seems tohave encoded only a gag-like protein similar to that of HUERS-P3, andwas thus presumably a nonautonomous element.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
actgggggctcgtccgggatcagcagaagggtgaggtacaaatgcgaaactgtcgggtctgcctcttttccaagaccctgccacctctctttctttcgggtaaaaggctctgtttcccttcacggaggtctagccgtcgcgtgggaccggaataaagtcctggggcaactgaaggcatcttttgctggaaggccccaagactgaactccgtcggccaagacccccagacttcgcttggtntcttttctctctctcacggtttgnaaatggctcttatctcctttataatgttaagagttttgctacaggctgcggcaatgttactaagtaaaatgagcatttggctcagccgccaaaggtgcaaatcagancaatgtgntttccgtttgttcctagaggtgccatctncgcccccaccccgacagccgcaggcgcgcacggctcagggcacctcccctccttaccctctcccctcccagctcgggcgcctgggcgtgcccgcagcangcaaaggccgcgcccaacggccacgaggggcgggagaaagccgcggcngccgccgggaccccacggggccggctggccggcgcttcctncccgccgcgccaacggaacctttcctcccctggccaaggaattcaacccggtctgaaccgggggaaggatacaangattaaagggacccatttgcactgagcaaggggttcttcccccaganccccccctttttgccccttaaactgtttttcttttttccttttctaagtgagagggttccctncccagcactctgcttctgatagggaagttaacggaggannagcgacccctgctggctgataactgcaaattcggcagggcccatttgagacaatctaaacggatacangcagcccctgaaataccttttcagtcccaaactcgattccaagcttcaggctgaggccctagaaaggaaaaccaggtctgagggatccaaagccaggcaacaggcacaatgtaaatgggcaggaccaattcctgccgactaaacccccgccccatggaaggaggccatgctccatggcataaacgaggcccagggaactcaaaggttgccgacagcagggagaaanggaggcataggtgagggcggntaattcctattctccaggccttccctgcttcatgggtgcangccgcattggcacccatgggcggcacctgccaaggtcgccgggactcggggataaaaggtggaaagngaagggaggacgctcgctttctctctccatcacaccccgagttttcgctgaaagaaggaagggaaatgagggacgcctctattccctgtctttcagaatgggcaaccagctctcttcaccacccccagcttatactcctctggagtgtatcctgaaccactgggactgctttgaccctcagaatctggaggaaaaacgcctcatagccctctgcacaaaggtttggccaaattatgatttacaggaaggactggcttggcctcaggaaggaaccattcatttcgataccatccggcagttggaacttttctgtagacgtgaggacagatggtctgaggccccatatgtgcaggctttctataccttgcaaggcaatccagacctttgccgacagtgtaggattgatccagccctcctgtttgccatctcagggaaggctgcaaggggcaagcccagggaactaaaganacgagtcccagaggcacccccagcagaggagccagctccctccagccctgctcctccgggtccaccccgacctccctatccagcttcagcctctcacttgccccctcctagaaatcctcaccctagacaagccccagtctcactcttgcccctccaacagatgcccggtgaatttggncccagtaaggtccaggtccccttctccctacaggacttaaagcaaattaagggggatcttggcaagttttcagatgaccctgacagatatatagaggctttccagaatttcacccaaatatttgaactctcctggagagacagttatgttacttttgaatcagaccctgacggacactgagaagcaggccgctctgcaagcggcagagagatttggggatgagctttgtatcacatatagcgtcagggaagggggcgaacnttatccaactggaagagaagcagtaccagtggatgaccctaaatgggatcccaatgacgagatgggagactggaagaggagacactttcaggtgtgcataaggagggcttacgtaggactaggaccaagcctctcaattatactaagttgtccatgatngaccagggatttgatgaaaatcccactgccttcctggaaaggctaagagaggccttggtaaagcacacctctctatctcctgattcagtcgagggacaactaatcctaaaggataaatttattactcaggcagcccctgatatcaggaggaagctgcagaaacgggccctgggaccagatagtactttagaggacctcctgaaagtggccacctcggtcttttacaatagagacagaggcccaggannnngagnnnaggagacacaggaaagaggcncgagaagctttaatggccaccgtgcaagcccacaaaccccagaattcccagggtgcacctgttaactgctaaagatatggcaagaacagttatctccttctaaagtttaaccgctcccatacaaggtttaatttctttcaccagggntgannnaacagctcggggtacaatgttgttgttagtatatttcacttcttatctctgtaatctttggcactagattctttccttgtataatacacgtttaacccatgcatacttaaccttataaaacttgttttttttttctctcacgcctagaggccatcaaactccaaacggtcaggcaaccggagcctcggacgatggctcccctttgctaggaacccttagatagacctctgggaggaatctgactgccgttttccccaaaacaacgccccctgtcagcaggaagcagctaagaccggtcatcgtccatattctaacggcagttagatgtgcctcttcagaggggggaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF506 40 28.9 Moderately correlated
2 ZNF534 21 19.6 Weakly correlated
3 ZNF669 11 43.0 Highly correlated
4 ZNF680 10 28.9 Moderately correlated
5 ZNF382 10 99.0 Weakly correlated
6 ZNF747 6 43.0 Highly correlated
7 ZNF28 5 28.9 Moderately correlated
8 ZFP57 4 87.0 Weakly correlated
9 ZNF679 4 28.9 Moderately correlated
10 ZNF479 4 6.4 Weakly correlated
11 ZNF429 4 28.9 Moderately correlated
12 ZNF263 4 180.0 Weakly correlated
13 ZIM3 3 87.0 Weakly correlated
14 ZNF793 3 99.0 Weakly correlated
15 ZNF468 3 28.9 Moderately correlated
16 ZNF707 3 74.0 Weakly correlated
17 ZNF18 3 160.0 Weakly correlated
18 ZNF736 3 43.0 Highly correlated
19 ZNF317 2 99.0 Weakly correlated
20 ZNF705B 2 28.9 Moderately correlated
21 ZNF182 2 99.0 Weakly correlated
22 ZNF202 2 160.0 Weakly correlated
23 ZNF251 2 94.0 Weakly correlated
24 ZFP37 1 99.0 Weakly correlated
25 ZNF705D 1 28.9 Moderately correlated
26 ZNF766 1 43.0 Highly correlated
27 ZNF2 1 99.0 Weakly correlated
28 ZNF816 1 28.9 Moderately correlated
29 ZNF141 1 43.0 Highly correlated
30 ZNF674 1 99.0 Weakly correlated
31 ZNF585B 1 99.0 Weakly correlated
32 ZNF547 1 74.0 Weakly correlated
33 ZNF519 1 19.6 Weakly correlated
34 ZNF486 1 8.6 Weakly correlated
35 ZNF441 1 43.0 Highly correlated
36 ZNF425 1 94.0 Weakly correlated
37 ZNF284 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF506 23 28.9 Moderately correlated
2 ZNF534 14 19.6 Weakly correlated
3 ZNF669 6 43.0 Highly correlated
4 ZFP57 2 87.0 Weakly correlated
5 ZNF468 2 28.9 Moderately correlated
6 ZIM3 1 87.0 Weakly correlated
7 ZNF28 1 28.9 Moderately correlated
8 ZNF707 1 74.0 Weakly correlated
9 ZNF429 1 28.9 Moderately correlated
10 ZNF479 1 6.4 Weakly correlated
11 ZNF263 1 180.0 Weakly correlated
12 ZNF2 1 99.0 Weakly correlated
13 ZNF585B 1 99.0 Weakly correlated
14 ZNF674 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF506 28.9 Moderately correlated