ZRdb KZFP & Repeats
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LTR_HERVS71

  • Name
    HERVS71
  • Repbase
    HERVS71
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000205
Description :

The associated long terminal repeats are LTR6A and LTR6B.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
taatggaggccccagcgaganattaacgccaccgggcgagagccgggctcgctccgggctcccccggaaggacggccggcttgtagggggggcgccacctgaaaaaanaattttcaggntccccgaaaggtgaccgtcttccggaggagagcggatcgactaccgtgtgggtgcccataaaattccacctctgagtcctcagcttctgaccccggggtcaggtaggtcagatttgacttcggttctggtaagagggaagcggccctgacgagggcgtccctcttttgactctgcccgtttctctaggacgctagagggtngagccctggttttctgntaggcgcctctgtgtctctgtctaggagggaagtggccctgacaggggccctcccttgactcagtccacgtcccaggatgctggaggactgagtcctggtttctggcagaccggnnnntcnntctctctctctctctctctttttctatctctcatctttctcttgttcaagtttcttggaaatctccgggaaagaaaannnnnnnnnnaaaaaaaaactgttataaactctgtgtgaatggtgagtgaatgagggaggacaagggcttgcgcttgtcctccagtttgtagctccacggcgaaagctacggagttcgagtgggccctcacctgcggttccgtggcgacctcataaggcttaaggcagcatcgggcatagctcgatccgagccgggggtttataccggcctgccaatgctaagaggagcccaagtcccctcagggggagcggccaggcgggcatctgactgatcccatcacgggancccctccccttgtctgtctaaaaaaaaaaanaaaaaaggaaaaactgtcataactgtttacatgccctaaagtcaattgtttgttttatgttgattgttctgttcagtgtctattgtcttgtttagtagttgtcaaagttttgcatgtcaagacgtcgatattgcccaagacgtctaggtaaaaacttcttcaaggtccttagtgctgattttttgtcacaggaggttaaatttctcatcaatcatttaggctggccaccacagtcctgtcttttctgccagaagcaagtcaagtgttgttacgagaacgagtgtgaaaaacattcgcctgattaagatttctggcaccatgaaagttgtaagtatttagatcgtcataccccacgtccaagtgattagacctcctctaaactaaaccggtagtgggttcaaaacagccaccctgcagatttccttgctcacctcttttgtcattctgtaacttttcctgtgcccttaaatagaacactgtgtaaggaaacgtacgcccgtactgctttacttcgtttagattcttactctgttcctctgtggctactctcccatcttaaaaatgatccgagtagtccttttccncctcgtccctgccccctaccccgcacatctcgttttccggtgcgacagcaagttcagcgtctccaggacttggctctgctctcactccttaaacccttaaaagaaaaagctaagtttaagctatttgcctttaagtcatagagacaccaaaagtatttaaggtgcagatctagaagaagaagaaganngagaacgcctagatcaaactgacccagaagatctcaggctggcccctagtcctcctccctcaatcttaaagctacagcaatgtggcaagtagtattagctgttgtagtttttctgctnctttctggtcatgttgattctgttctttcgatactccagccccccaaggaatgagtttctctgtccgtgctaggtttaatatctatgctcaanatcttattaaattgccttcaaanaanaaaaanaannnnaaaacgggaaacacttcctcccagccttgtaaaggttagagccctctccaatgtatgctgcagaatttttctctcggtttctcagaggattataaagtccgccttaaaaaaggcaagctccggacactctgcgaaatagaatggccaaagtttagagtcgagtggccccctgaagggtcattgaacctcacaattgttcaagctgtgtggcgggttgttactgaaactcccagccaccctgatcagtttccctacattgatcaatggctaagtttggtcaggagcccccctccatggctccgttcatgcgccattcataattctacctccaaggtcctcctgagccagaccgcgttttcgcctcgaccctcagccggttcggctccccctgtactgcctccctctgaagaagaggagagtctccctcacccagtcccaccgccttacaaccagcctgctcccttaaagttatcccatgtctcctcgacgacgtcccctgtaggctcgccacccattgcctctcgatcgcgaccgcggcgggaggaagtagcccctctactaccactgagagaggcacaagtccctccgggtgacgagcgctcagcccccttcttagtttatgtccctttttctacttctgacttgtataattggaaaacccataatcctcccttctctgaaaagccccaggctttgacctctctgacggagtccgtactccggactcacccgcccacctaggatgattgccaacagctccttttaacccttttcacctctgaagagaaggaacgtatccgaagagaggccaaaaagtacttcctcgcatcagccaatggaccggaggaggaagctagagacctccttgaggaggtctttccctctacccggcctaaccgggacccaaattcctcaagtggaaggagagctttagacgattttcaccggtatctcctcgcgggtattaaaggagccgctcggaaacccataaacttgtctaagacgaccgaagttgtccaggggcccgatgagtcaccaggagcgtttttagagcgcctccaggaggcttatcggatttacaccccttttgacccggcggctcccgaaaatagccgtgctcttaatttggcatttgtggctcaggcagccccggatattaaaaggaaactccaaaaactggaaggatttgctagaatgaatatcagtcagcttttagaaatagcccaaaaagtttttgacaatcgagagtttgaaaaacaaaaacaagcaacacaggcagctgaaaaggccgctgataaagcattcaaaagacaaacaaaaatcttagtggcggctatccaagaggacagaatgaaatggcccccattccagaagaatggccaaggaacctcgggttcccaccagaaaagtaaaagaggtgaacaggcccctctaggaaaaaccaatgtgcctattgcaagcagactgggcactggaaaaaggagtgcccactactgccanaagaaaagtcagaaaacaaaaaggtcctcaccctgcccgcaacggaggagcctgatgattgacggggccagggctccctcgctcttggcccccaggancccatggtaactgctacagtggggggccagcctgtacgtttcctagtagacaccggggcggagcactcggtactgcagactcccttgggcagtgtctcaaataaaaaaatgactgtacaaagggcaactggagctattcaagaatatcctgtcacacgctcccgagaagtaaacttgggacagaaaagagtgacacactcttttctngtggttccagagtgtccttttcctctccttggacgagacctgctccataagttacaggcctcaatctccttttcagctcagcaggctcatctcacactaggaaatgcaacttcccccactgcccaactcttgctaactacccctctgtcagaagaataccttctggtttcaccatcacaatcaccggaggagaatactaatactcttttgttggacntacagacactttttccccgagtttgggccgagtcaaaccctcccggactggctaaacaccatccgccagtggttgtagaactcttggccactgccataccggtccaggtaaagcaataccccatgagtcagcaggctagagaggngattaatccccacattcaatgactgttacaagctggcatacttacaccatgtcagtcggcctggaacacnccatttttgccggtccagaaacctggaacaaatgattaccggccggtacaagacttaagggaagttaataaatggactgttactgtccatccaaccgtccctaatccttatactctactcagcctgctcccaccagaacatacagtatacactgtccttgacctgaaagatgctttctttgctattcctctggcccccaaaagccagccgatttttgcatttgaatggacagatccaagatcaggagacactacccaactgacttggactcagttacctcagggttttaaaaattcccccaccctttttggggaggctcttcggcaagatcttataccttccgagctagtcaccctaactgtactcttcttcagtatgtagatgatattttaatagctactgaaactatggacagttgtctacaacacacgagggacctgctctacctccttcaggagctcgggtatggagtctcagccaaaaaggcccagctttgtcttcccagagtgtcctacctggggtacgagataaaccaaggaaaaagggcactcaccagtgcccggaaagaagccatcctgcgaatccccactcccgccaccaagagacgggtacgcgaattnctgggggccgtgggatactgtcgcctctggatatcggggttcgcggagattgcaaagcccttgtatactgctacaggangnaatggcccgctaatttggacagacacngaagaacaggcttttcaaaacctgaaaaaggcattaactgaagcccctgctttagccctccctaatatctcaaagccgtttcacctgtttgtccatgaaagccagggagttgctaaagaggtgcttactcagactttaagaccctggagacgcccagtggcctatttatctaagaggctggatcctgtggcctctggatggccaagttgtctgcgagccgtagcggctacagcaagcctagtccaagaagntgataagttaactctaggccaaaatttaacccttacagctcctcatgccgtagagaccttactacgaagtgcttctggcaaatggatgtcaaatgctcgcatcttgcagtatcagagtttactgttagatcagcctcgtttgactttctctcccacaaggtgtttnaatccagctacactacttcctgacccagactccactattcctgctcatgactgtcaagaactgttagaaactaccgaaactggccgacctgatcttcaagatgtgcccctagaaaaggcggatgccgccgtgttcacagacggtagcagcttcctcgagcagggagtacgaaaagccggtgcagctgttaccacggagacagatgtgttgtaggctcaggctttaccagcgaacacctcagcgcaaaaggctgaattgatcgccctcactcaggctctccgatggggtaaggataaacgtattaacatttacactgacagcaggtacgcctttgctactgtgcatgtacatggagccatctaccaggaangcgggctactcacctcagcaggaaaggctatcaaaaacaaagaagaaattctagccctgcttgaagccgtgtggctccctcagcaggtagctgtgatccactgcaaaggacatcaaaaagaaaacacggccgttgcccgtagtaaccagaaagctgattcagcagctcaggtcgcagcgngactttcagtcacgcctctaaacttgctgcccacagtctcctttccacagccagatctgcctgacaatcccgtatactcaacaaaanaaaaaaaactggcttcagatctcagagccaataaaaatcaggaaagttagtagattcttcctgactctagaatcttcataccccgaactcttaaagaaactttaatcagtcacctacagtctaccacccatttaagaagagcaaagctacctcagctcctccggagccattttaagatcccccgtcttcaaagcctaacagatcaagcagctctccggtgcacaacctgcgcccaggtaaatgccaagcaaggtcctaaacccagcccaggccaccgtctccgaaaaaactcgccaggagaaaagtgggaaattgactttacagaagtaaaaccacaccgggctaagtacaaataccttctagtactagtagacaccttctccggatggactgaggcatttgctaccgaaaacgaaaccgccaacacggtagttaagtttttactcaatgaaatcatccctcgatataggctgcctgctgccatagggtctgataatggaccggccttcacctcgcccatagctcagtcagtcagtaaggcgttaaacattcaacggaagctccattgtgcctatcgaccccagagctccgggcaggtagaacgcatgaaccgcaccctaaaaaacactcttacaaaattaatcttaaaaaccggtgnaaattaggtaagtctccttcctttagccctacttagagtaaggtgcaccccttaccaggctaggttctcaccttttgaaatcatgtataggaaggcgccgcctatcttgcctaagctaagagatgccnaattagcagaaatatcacaagctaatttattacagtacctacagtctctccaacaggtacaagatatcatcctgccacttgttcgaggagcccatcccaatccaattcctgaccagacggggtcctgccattcgttccagccaggagacctagtgtttgttaaaaagttccagaaagaaggactcactcctgcttagaaaagacctcacaccgtcatcctcacgacgccaacggctctgaaggtggacggcattcctgcttagattcatcactcccgcatcaaaaaggccaacagagcccaactaaaaacataggtccccaggcctaggtcaggccccttaaaactgcgcctaagtcaggtgaagccattagattnattctttttatctacctcacttgtttgtttttgcccgttacgtcctctgtgccttcctactcctttctcctcacctctttcacaacaggacgtgtatttgcaaacaccacttggaaggccggtacctccaaggaagtctcctttgcagttgatttatgtgtactgttcccaaagccagcccgtacccacgaagagcaacacaatctgccagtcccaggagcaggaagtgtcgaccttgcagcaagattcggacactccgggagccaaactagatgtggaagctccaaaggtgcagaaaaaggactccaaaatgttgacttttacctctgtcctagaaatcaccctgacgctagctgtcgagatacttatcagtttttctgccctgattagacatgtgtaactttagccacctactctaagagatcaaccagatcttcaactctttccataagtcgtgcttctcatcctaaattatgtactagaaaaaattgtaatcctcttactataactgtccatgaccctaattcaactcaatagtatcatggcatgtcatgaagattaagattttatatcccaggatttgatgttaggactatgttcaccatccaaaanaaaaccctggtctcatggagcccacccaagccaatcgggcctttaactgatctaggtgaccctatgttccagaaacaccctgacaaagttgatttaactgttcctccaccattcttagttcctaagccccagctacaangacancatcttcaacccagcctgatgtctatactaggtggagtacatcatctccttaacctcacccagcctaaactagcccaagattgttggctatgtttaaaagcaaaacccccttattatgtaggattaggagtagaagccacacttaaangtggccctctatcctgtcatacacgaccccgtgctctcacactaggagatgtgtctggaaacgcttcctgtctgattagtaccgggtataacttatctgcttctccttttcaggctatttgtaatcagtccctgcttacttccataagcacctcagtctcttaccaagcgcctaacaatacctggttggcctgcacctcaggtctcactcgctgcattaatggaactgaaccaggacctctcttgtgcgtgttagttcatgtncttccccaggtatacgtgtacagtggaccagaaggacaactcctcatcgctcccccggaattacatcccaggttgcgccgagctgccccactnctggttcccctcttggccggtcttagcatagctggatcagcagccattggtacggctgccctggttcaaggagaaactggactaatgtccctgtctcaacaggtggatgctgatttaagtaacctccagtctgccatagatatactacattcccaggtagagtctctggctgaagtagtncttcaaaaccgccgaggcttagatctgctattcctctctcaaggaggattatgcgcagctctaggagaaagctgttgcttctacgccaatcaatctggagtcataaaagatacactccaaaaagtgcgagaaaatctagataggcgccaacaagaacgagaaaataacatcccctggtatcaaagcatgttcaactggaacccatggctaactactctaatcactaagttagccggacccctccccatcctactattaagtctaatttttgggccttgtatattaaattagtttcttaattttgtaaaacaacgcatagcttctgtcaaacttatgtatcttaagactcaatataacccccttgttataactgaggaatcaacgatttgattccccaaaaacacaagtggggaaatgaaatgcctaacgttgtttttactctaactngttactttgaattttgtcctgcttgtctctttaatc
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 27 43.0 Weakly correlated
2 ZNF382 26 99.0 Weakly correlated
3 ZNF723 16 15.2 Moderately correlated
4 ZNF175 13 94.0 Weakly correlated
5 ZNF589 12 28.9 Highly correlated
6 ZNF197 11 99.0 Weakly correlated
7 ZFP37 10 99.0 Weakly correlated
8 ZIM3 10 87.0 Weakly correlated
9 ZNF584 9 99.0 Weakly correlated
10 ZNF394 9 99.0 Weakly correlated
11 ZFP69B 8 99.0 Weakly correlated
12 ZNF2 8 99.0 Weakly correlated
13 ZNF263 8 180.0 Weakly correlated
14 ZNF141 7 43.0 Weakly correlated
15 ZNF705B 6 28.9 Highly correlated
16 ZNF101 5 43.0 Weakly correlated
17 ZNF169 5 94.0 Weakly correlated
18 ZNF680 4 28.9 Highly correlated
19 ZNF425 4 94.0 Weakly correlated
20 ZNF610 4 28.9 Highly correlated
21 ZNF479 4 6.4 Weakly correlated
22 ZNF707 4 74.0 Weakly correlated
23 ZNF75D 4 94.0 Weakly correlated
24 ZNF554 3 99.0 Weakly correlated
25 ZNF679 3 28.9 Highly correlated
26 ZKSCAN8 3 160.0 Weakly correlated
27 ZNF28 3 28.9 Highly correlated
28 ZNF18 3 160.0 Weakly correlated
29 ZNF793 3 99.0 Weakly correlated
30 ZNF468 2 28.9 Highly correlated
31 ZNF534 2 19.6 Moderately correlated
32 ZNF558 2 99.0 Weakly correlated
33 ZNF682 2 28.9 Highly correlated
34 ZNF705D 2 28.9 Highly correlated
35 ZNF92 2 28.9 Highly correlated
36 ZFP57 2 87.0 Weakly correlated
37 ZNF182 2 99.0 Weakly correlated
38 ZNF274 2 99.0 Weakly correlated
39 ZNF257 2 0.0 Weakly correlated
40 ZNF93 1 8.6 Weakly correlated
41 ZNF486 1 8.6 Weakly correlated
42 ZNF84 1 99.0 Weakly correlated
43 ZKSCAN1 1 160.0 Weakly correlated
44 ZKSCAN5 1 160.0 Weakly correlated
45 ZNF17 1 69.0 Weakly correlated
46 ZNF716 1 19.6 Moderately correlated
47 ZNF189 1 99.0 Weakly correlated
48 ZNF202 1 160.0 Weakly correlated
49 ZNF212 1 160.0 Weakly correlated
50 ZNF695 1 28.9 Highly correlated
51 ZNF222 1 43.0 Weakly correlated
52 ZNF641 1 99.0 Weakly correlated
53 ZNF282 1 319.0 Weakly correlated
54 ZNF597 1 94.0 Weakly correlated
55 ZNF324 1 99.0 Weakly correlated
56 ZNF441 1 43.0 Weakly correlated
57 ZFP14 1 99.0 Weakly correlated
58 ZNF483 1 99.0 Weakly correlated
59 ZNF549 1 87.0 Weakly correlated
60 ZNF485 1 94.0 Weakly correlated
61 ZNF519 1 19.6 Moderately correlated
62 ZNF510 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 13 15.2 Moderately correlated
2 ZIM3 6 87.0 Weakly correlated
3 ZNF141 6 43.0 Weakly correlated
4 ZNF263 4 180.0 Weakly correlated
5 ZNF169 3 94.0 Weakly correlated
6 ZNF707 3 74.0 Weakly correlated
7 ZNF2 3 99.0 Weakly correlated
8 ZNF479 3 6.4 Weakly correlated
9 ZNF680 2 28.9 Highly correlated
10 ZNF793 2 99.0 Weakly correlated
11 ZNF28 2 28.9 Highly correlated
12 ZNF75D 2 94.0 Weakly correlated
13 ZNF382 1 99.0 Weakly correlated
14 ZNF554 1 99.0 Weakly correlated
15 ZNF485 1 94.0 Weakly correlated
16 ZFP14 1 99.0 Weakly correlated
17 ZNF189 1 99.0 Weakly correlated
18 ZNF705B 1 28.9 Highly correlated
19 ZNF212 1 160.0 Weakly correlated
20 ZNF597 1 94.0 Weakly correlated
21 ZNF705D 1 28.9 Highly correlated
22 ZNF534 1 19.6 Moderately correlated
23 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Weakly correlated
2 ZNF141 43.0 Weakly correlated
3 ZNF723 15.2 Moderately correlated