ZRdb KZFP & Repeats
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LTR_HERVP71A

  • Name
    HERVP71A
  • Repbase
    HERVP71A_I
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000204
Description :

The associated long terminal repeats are LTR71A and -B, and have 5 bpTSDs. The reconstructed autonomous HERVP71A has 3 ORFS: 518aa gag(461-2017), 1167aa pol (~2018-5521) and env (~5553-7574). The pol genecontains protease (140aa), reverse transcriptase (517aa), RNase H(140aa) and endonuclease (270aa) domains.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aacctgggggcccgtccgggatctctgtgcctgcgtggagtgggactccggccgagaggggagacgcgtcccacccgatttaggtggcccgctctgtccgggcgtcccggctccccgcagaagccatagacaaacccgagactgttattcaggaggcagcggaggcgacacagggagaaaagcaggcaccgcggcaaccaggcaacctcgtgcacgagccaaggtaggaaaattggactgtaagtactgccttggtggttgggcattttcggaggtcgagtgtgtgtgactgagacgtatcctagatacgaagcgagtgcggagtcccaatccgcggttccgttctcccgcgagggaaacggccggagacggacgaagcgattctcggggtgtgcaagaaacctccagtagggggggttgagtacacagggaaaagctcagacacagagactgaccgaaaatgggaaacaggaattctaggcctaggggacaaaggaaagagggagccaaagagactccctctgacattcccccggatagtcctttggggagaatgctgcaggtttggagggacaaccctcgaaccagggacaaggaaaagcaaaagatgataaagtattgctgttttatctggcccaaagaccccattcgtaagccttcggtcttttggcctaagtttggctcagatgaggattgggtgtgccaagctttaattctctatgtgaatgataaaaccccatcctcacaagaggagataggttatgctctctgctggatcaaggaattagcccccatgttccccctcaaagaagaagaaaaagagcctagtaaagagccctcgcccagtgaaaagccctgggaccccctatcatgcttgccccctccatacgtctcacaaaataggggacaggaagatcaaggggcagcaggagggttagaggaagagagacctggagaccatgggggagctaaaccaactgctcctttaaatccttatccaaatttaagaaaagaattagaacagtgtaagagggatattgagaacttccctatcccttccaaacagcaggcgtctagcatgttccctcttagggaagtccccatgggacagggagagattggctttgtaaatgctcctctnacaagtactgaagttaggaatttcaagaaggaaatgaggccactcctagaagatcccctcggtttagcagaccagctggaccaattcctaggacccagcttttacacctgggctgaaatgatgtcnatcatgaatatcctgttcacnggggaagagaggggaatgattaggagggcggccatgaccatttgggagaggcagcaccctcccgggcaaggagtcctgccagccgagcagaaattcccaaatgtcgatcccgaatgggataataatgatcccagggaccgggcccaaatgcaggacctcagggaactaataattaaagggatcaaagagtccactcctaggacacaaaatgtctcaaaggcattcgagattcaacaagaaaaagaggaaactccctctgcattcctgcagaggctcagagatcagatgagaaaatactccggattagatccggaggacccagtagggcaaggccttttgaaggttaactttgtaactaaaagctggcctgacattacnaagaaactacaaaagattgatggatggaatgagaaaccgattgaggaattactgagggaagctcagaaggtctttgtaagaagagaggaagagaagcagaaacaaaaagcgaaaatcatggtttccactgtggaagaggtagtcagaaaaaggttagatcaagatccccctcggaggagacgagggaatgntagatttcgacacagaganagaagggaaatgcagggaaaagctcctaagactatgagtggatgttacaagtgtggaaagccagggcattttaagagagaatgtcctgaatggaaaaaagaagaaaaggtgatccccctcatgaccnttgatgaagactaggggggtcaggggttccttctgagtaggtcccaccaggaacccttgataaatttgaaggtgggacccgagggagaagaagtgacatttttggttgatactggggcggctcgctcctccctaattcaccaaccaaggggtacagaactctctaaggaaaaattgacagtatcaggggtaaaaggggagggatttcaggttccgatattcaagaaaatgttaattagattgggaccagaacaaattgaggggtcactcttatatgttcctgaagcaggaactaacctcctgggtcgagacctgattgtgagattgggtttaggattaggaatagaggagggacaaataaaagtaatgatgggcctcctaacagaggaggaggaaagaaaaattaatccccttgtgtgggttagggaaggcaacaggggagggttaaaaatcacacccttacagattgaactaaaacaaccaggagaagtagtttgcagaaaacaatatcccatttccattgaagggagaaaaggtctccaaccggtaatagagggattgattaaagatggactattagaaccctgcatgtcaccatacaatactccaattctcccagtcaagaagcctgatgggtcgtatagattggtgcaagatctaagggctataaatcaaattgtccagacccgccaccctgtggtgcctaacccctacaccctccttagtaagataccctatgaacataagtggttcagtgtggtggatctaaaagatgcattctgggcatgtcccctagactttaggagtagggacctctttgcctttgaatgggaaaatcctataactgggagaaaacaacagtaccgctggactgtgctgccacaaggtttcacggaagccccaaacttatttggtcaagtcttagaaaaagtcctggaggaattccaaccttccaggggaacccagttgttacaatatgtagatgatcttttaatttctggggagaggagggccgaggtatcagaaaccaccataagcttgcttaatttcctaggagaaaggggattgcgagtctctaagaacaaattgcagtttgtagaaaaagaagttaaatatttaggacacctgattagtgaagggaagcggagaataaacccagagagaatatcgggaatagtgggtctgcctttgcctaagacaaagagagaactccgaaaatttttaggtttaactggctactgtaggttatggattgactcatatgctcaaaagacaaagattctgtatctcaagttactagaagaggaacccgatcccttgcaatggtccccagaggaaattcaggcagtgaaagagctaaagcaggccctcattacagccccggtcctggccctcccatctttagagaaaccattccatctgtttgtaacagtagaccagggcgtggcccttggggtgctcactcaaacctggggagggaagaggcaacctgttgcttttgtctccaagcttctcgatcctgtctctcgggggtggcccgaatgtgtgcaagcagtagctgccacagccctgctggtagaggagagtcgaaagctaacctttggcggggccctaatagtaagcaccccacaccaggtcaggaatatattaaatcaaaaagccgggagatggttaacggattctcagattctaaaatatgaagccatattactagaaaaagatgatttggtcgtaacaacaaatacttgcctgaatccagccagtttcctatggaaaggagaggagaacgaagaggcatcagaccataactgcttagatatcatagaataccaaaccaaagttagaccagaccttagggaagctccactacatgatgggataaggctgtttgtggatgggtcgtcccgagtgatagatggcaagagacataatggctatgctgtcattgatggaaataaacantccttatgtgagaaaggtagattacctaatggctggtcggcccaaacctgtgaattatatgctcttaaccaggccctaaagctccttgaaggccaagaaggcactatatatactgattccaaatatgcctatggggtggtacacacttttggaaaaatctggacagagcggggcctaataaatagcaggggaaaagaattggtacatggggaactggtcaaacaggttttagaaagcctcctgcttccagcagaggtagccatagttcatgtaaatggccatcagaaagggaacactatagaagctgtaggaaacaggcttgcggatgaagctgctaagcaagcctccctggaggaagaaattagactatttagcctgatcccagacatccctaaggtggtattaaggccccagtttaccagagaggaggaggaagaattaggcaagataggggccactcaaactgaagatgggaggtgggtacttcctgatgggagagaaatgataagtaaacccctgatgagagaactaatgtctatattacacaaagggagtcactggggaccccaggctctgtgtgatgcaatacttaggaattatgggtgtatagggatttataccctcgctaaacaagtatgtggaagttgtgtaacttgtcaaaggataaacaaaaaggtgattagaaaacaggccacgggaggaagacctcccggactaagaccatttcaaagcattcaagtagatttcacagaaatgcccaaagtaggaagactaaagtatttactggtgatcgtagatcacctttccggctgggtggaagcctttcccctcccaacagccaccgccgggaatgtggtcaaaataatattagaacagattgtacctagatttggcctggtggaaaatattgattcagacaatgggagccactttacctcaagggtgttaaggggaattatggaaggtttacaaattagatgggattatcacaccccttggcatcccccttcctctggaaaggtagaaagaatgaatcaaactctcaaaaagcatatcaccaaactaatcttagaaactaaaatgccttggaccaaatgtctcccaatagcactccttaggattaggacagccccaagaaaagacttgggattgtccccctacgagttattatatgggctcccatatttgggcagggctacagatcttcctactatggaaaccaaggaccaattcttaagaaattatatactggccatatcctccaccctgtcatcccttaggttaaaaggacttctgactcaaactccgcctcttgagttcgcggttcaccacttccagcctggcgactcggtgctgattaagacttggaaagaagacaagctccacccaagctgggaaggtccctatcaagtgctcctgaccactgagacggccgtgcgaacagctgaacgggggtggactcactatactcgagtcaagggactggtaaaagaanngaccccggaagggaggggaaaannnnnaaaaagaccagtggaaagtgcatgggtcacctaaggaacccttaaagttaactctgagaaaaatctaaaaagaaaacatgggctggccccatttctggaagttaatatggctgggatgggctactatacaaagagcagaaggtcaaaatggaaactggcaggggactcctccctacccaatcaggttggtaatcaacgtaaccaagacggtagcaccccagactataagatttgatgcctgccaggtcttaccttgtgggaatttagaaaaccagagacagctctcgcaggcagataaatatctttgccctgaaccagatacaggttacagtagggcatcgccctgccccagctgggatgatgtatggtggaccacccaatttcagggttggacagtaaacatggggtgggtaactccgagctggagacccttaaagaataaactacatctgtccaagggctccccgccaaataactgccagaatttagaatgcaatcctatactcatcaccattgacaatccagctattctagaccaagaaccaaaagtagcgtctcgggtatatgggttaggggcagacatcacagggaaagaccccctagggcgatttgttctcaagctaatcaagaactcaacctcccattcgcccgggactactccaaccccagaccctaataaacactttagtccaccaaataatgaccctaaaagggtaaaaataattgaggtaaaggatttaaggcaaaccttagaaattgagacagggtacggggatgtgaatgcctgggtcgaatgggtcaaattttcggtacaagccctcaacaagagtaactgctacgcgtgtgctgcgggacgacctcaggcacaggtggttccgtttcccctaggatgggataccgatcccgaaggaatgcgttgcatgttggctctataccaggacaaggatgcatggggaaatgagacttgtaagagtctgtcattgctctttcccgcattgcggaggtcagatcccagagcaatcccctcgttctctatagggaatatgaaccactcctcttgcctctctaggcagggggcagagttcaataagcccgtgggagaactctcgacttgtacccacatcctaaacgtcactggtgagtcaggcaatggcaattactcggctctccatataccccgggctgatgtctggtggtattgtgggaaaaggaacctccgtaacctgttaccgtccaattggaccgggacttgtgctttagtccaattggccattcccttcaccctggcattccataagatacccgaaaatacacatggccaccgaaaccggagagatttaacaaattcttttgatcccaatatatatgttgactcaataggagtccctaggggggtgcctaatgaatttaaggcccgaaaccaaatagctgctgggtttgagtcagcactcttctggtggtcaactattaataagaatgtggattggattaactacatctattataatcaacagagattcatcagttatactcgggacgccctcaaaggggtggctagccagttagatgccaccagccgaatggcctgggaaaacaggcttgcgctagacatgatactagcagaaaaagggggcgtatgtgttatgctgggtgggaaatgttgtactttcattcccaacaatactgccccagatgggaccatcacaaaagctttacaaggactgacaactctagccaacgaactggcagaaaatgctggaattgatgacccatttacgggttggctagaaggttggtttggaaaatggaaaggcatggtagcttcaatccttacatctctcataattgtggcaggagtcttaacagcagtgggatgttgtattatcccttgtgtgaggggactagcacagagattaattgaaacagctattaataaacaaatgcccatgacttaccagcaaaataacctgctactattagaaaccaaattaaactcactctcctatgaggaagaaagtaaacgacttctagagcgattcgaggaccaaaagggtttaaatgaaaatgagaccaaaggaagtaaatagaaaagaggagggaatt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 56 43.0 Highly correlated
2 ZNF680 22 28.9 Moderately correlated
3 ZNF382 20 99.0 Weakly correlated
4 ZNF154 18 94.0 Weakly correlated
5 ZNF723 14 15.2 Weakly correlated
6 ZKSCAN1 12 160.0 Weakly correlated
7 ZNF18 12 160.0 Weakly correlated
8 ZKSCAN8 10 160.0 Weakly correlated
9 ZNF485 10 94.0 Weakly correlated
10 ZNF175 10 94.0 Weakly correlated
11 ZNF394 9 99.0 Weakly correlated
12 ZNF506 9 28.9 Moderately correlated
13 ZNF197 8 99.0 Weakly correlated
14 ZNF701 8 28.9 Moderately correlated
15 ZNF589 7 28.9 Moderately correlated
16 ZNF584 6 99.0 Weakly correlated
17 ZNF2 6 99.0 Weakly correlated
18 ZNF479 6 6.4 Weakly correlated
19 ZNF679 5 28.9 Moderately correlated
20 ZNF597 5 94.0 Weakly correlated
21 ZNF263 5 180.0 Weakly correlated
22 ZNF534 5 19.6 Weakly correlated
23 ZNF793 5 99.0 Weakly correlated
24 ZFP57 4 87.0 Weakly correlated
25 ZNF705D 4 28.9 Moderately correlated
26 ZNF317 4 99.0 Weakly correlated
27 ZIM3 4 87.0 Weakly correlated
28 ZNF101 4 43.0 Highly correlated
29 ZFP37 3 99.0 Weakly correlated
30 ZFP69B 3 99.0 Weakly correlated
31 ZNF705B 3 28.9 Moderately correlated
32 ZNF610 2 28.9 Moderately correlated
33 ZNF749 2 28.9 Moderately correlated
34 ZNF735 2 28.9 Moderately correlated
35 ZNF726 2 28.9 Moderately correlated
36 ZNF251 2 94.0 Weakly correlated
37 ZNF605 2 99.0 Weakly correlated
38 ZNF274 2 99.0 Weakly correlated
39 ZNF558 2 99.0 Weakly correlated
40 ZNF554 2 99.0 Weakly correlated
41 ZNF284 2 43.0 Highly correlated
42 ZNF528 2 43.0 Highly correlated
43 ZNF519 2 19.6 Weakly correlated
44 ZNF707 1 74.0 Weakly correlated
45 ZNF350 1 99.0 Weakly correlated
46 ZNF792 1 94.0 Weakly correlated
47 ZNF324 1 99.0 Weakly correlated
48 ZNF75D 1 94.0 Weakly correlated
49 ZNF486 1 8.6 Weakly correlated
50 ZNF490 1 43.0 Highly correlated
51 ZNF730 1 19.6 Weakly correlated
52 ZNF273 1 28.9 Moderately correlated
53 ZNF133 1 99.0 Weakly correlated
54 ZNF182 1 99.0 Weakly correlated
55 ZNF441 1 43.0 Highly correlated
56 ZNF257 1 0.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 21 43.0 Highly correlated
2 ZNF154 18 94.0 Weakly correlated
3 ZNF680 14 28.9 Moderately correlated
4 ZNF723 12 15.2 Weakly correlated
5 ZNF485 9 94.0 Weakly correlated
6 ZNF506 6 28.9 Moderately correlated
7 ZNF479 5 6.4 Weakly correlated
8 ZNF534 4 19.6 Weakly correlated
9 ZNF263 3 180.0 Weakly correlated
10 ZNF584 3 99.0 Weakly correlated
11 ZNF793 3 99.0 Weakly correlated
12 ZNF597 2 94.0 Weakly correlated
13 ZNF735 2 28.9 Moderately correlated
14 ZNF589 2 28.9 Moderately correlated
15 ZNF175 2 94.0 Weakly correlated
16 ZNF382 2 99.0 Weakly correlated
17 ZFP57 2 87.0 Weakly correlated
18 ZNF197 2 99.0 Weakly correlated
19 ZIM3 2 87.0 Weakly correlated
20 ZNF792 1 94.0 Weakly correlated
21 ZNF705D 1 28.9 Moderately correlated
22 ZNF75D 1 94.0 Weakly correlated
23 ZNF749 1 28.9 Moderately correlated
24 ZKSCAN8 1 160.0 Weakly correlated
25 ZNF350 1 99.0 Weakly correlated
26 ZNF101 1 43.0 Highly correlated
27 ZNF257 1 0.0 Weakly correlated
28 ZNF317 1 99.0 Weakly correlated
29 ZNF133 1 99.0 Weakly correlated
30 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF485 94.0 Weakly correlated
2 ZNF506 28.9 Moderately correlated
3 ZNF680 28.9 Moderately correlated
4 ZNF723 15.2 Weakly correlated