ZRdb KZFP & Repeats
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LTR_HERVL74

  • Name
    HERVL74
  • Repbase
    HERVL74
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000203
Description :

The associated long terminal repeat is MER74C. HERVL74 encodes pol(~1231-3367). Reconstruction in the gag gene region is incomplete.HERVL74, on average 20% diverged, probably predates the mammalianradiation.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
attggcactgtgagcaggatggcgtggccatgaccgctgactcttggatagcttctcggggggctgctcttggcttactaantggttccaaaccaccncgagagtggctcggacagaaccggagctttngctttagccttgttgcctnctgctgtgtctgtcggtgntngccatgtntccccacatcgctcagaatattctaatgaacagtgctaacagattaaactctggaggctcaataaaagccttggtgggggcccaccccatggatatgggagngatgggccgctagagctgcactttccggngtcggagcgttcngncgtntttntngtcactgtgttcggcagaggccgaccccagatgcccttnnctctttgttnccttttttattacatatgatattntanaaaaccattanttggggcagagcgntggtttgtccntgtgtttcaggcaacctttntgnagaaaggtgntggctgggntcccccacggtananaaatggcatccttgtctcgnggtcagtgttgctcaagtgggggtagccgtctacctgccttctttgctgctncatacntcgctgctgtcgccagnnaacttcanatttcccagaccctcaggaatatcgtggattgcaccgttggagaccagccgcccagtgtttaattcaaagaggnttctgggcaaggaaananatatctcattcctgcgncccccttccgaacaccngcnaaagtnacccagttgcttaagtgatncaaggcncccagccagtgtgnttgggccttantaagtnccgctncangtcaacatgcgaagggannaaacttggaccaggganttattgcctgtcccaaggacaggcggctgnagctctctgaagtgnaancccagatnnctccangaggnanttactgggaagccttaggangaagagatggccgcctacaaggcagaccactgggccgcttccccaactcctttcctgtaaccacccannnnnnnnnnnnnnnnnnnnnnnnnnnaatagataaattatgtatatataatatataancgaattaaaacaaagttctataatttgacccaattagaaatccaaaattcatatantaatttntatactaaagaatttatataacaaaagtataaaaagggcactgattggcttttgtgcctctacaacataggttctaacttaactttaacatttgctaaaatgcaccaattgacaaaacttcatggacttaatcaatactggggctcaaattatagttatacctggggatcccactaaatttaaacactgtaccccctataatcttaggagggtaactaaatataaaatagaggaaaaataggtatgcctcactttaactgtngnnnntnncgccttgcctaaatttcccatagtcatagtacccattgccctaaaatatcccatattgggcatagatgctctgacacaataaataataaattaaaattaaantaagtctttggcacttacaaattggcttgataaaatgggaccccatgaaccccccagttaaaatagttaatatggcccaatgtaagttaaaacagggccttcaaggattaaaacttattatataaaacctaattaataaaggggtgattatccccactgcttctccatttgacagcccaattttgcctgttcttaaacctggaaaaaataaatggcgcctcacggtggattactacaaccttaacgctgtggtcccatccattaaggcccccatacccaatatccaatattattaaaattactgactctatccaatcaacaaccggtaaatattttgctnttatagatttggctaacatgttctgttcagtgcctatttcaacagcctctcagccgcagtttgccttcacctccgaagggacacaatacacctttnccaggctacccatggggtacctcaacagctttgtcatcgcacacaatctttgcagacaagatcttaaccgcatccacctttctccaggagcacaggtatgacattacattgatgacatcctcctccaaggagattcatttgacacactcattaaggacatacaagtccaacatcttttagtnctttttgggttctggtggcaacatattcctcatttacaaattttacttaatctcactgatgctgctacttacaaatagcccaccttaatggggcnttctcaacaaaaggctctaaaatctgtccaaattaaaatcaacaggcactcctgttagtgccctcagagactccttcactgtagaggctttggcaacctcttctcatgcctcctggagtctctggaccacttatgatggccatnagttgcccnagggcttctgatgcaagaaactgcccctctcggcctcgtgctatacaccattaaaacaacaantgctggctacntactgggctctcctggaaatagaggctctcacagaccctgagcctgtgaccctccatacccagctgcccattatgctttgggtcatggaaacagcaccccacaagctcagcacggctaccgaggcctccttaagacaggatggagccaaacctgggccctctggcatattccacctgcaggagggggtggcctcccctgtcctcagtcccttgccagatgccanggtgctggaggaggtcacccctcccccagaccccttggctacctggggagccccttgggattaactgagtgaacagcaatgggagttcgtagactgtacgaatggcactgccaccatcatangtgatggagctcagtggaatgttgctgctttccatcccttagccaggatgtccctgataaaggacgggacccaagaancaacacanttggccaaacttcaggcagtcgtcttagcactggatgccctggccaacaaatggccccatcttcacatttttacaaactattgggccattgcctaagagttgtccccttcagggtaaaaaactctgggaatctcttgcctcacagatacccaaaatataaatcaaaatcacgcatgtctctacatatactaaggccacaatacaaggcctcgccaggacactccttattcccttcggagttncagacattactgatagtaaccaaggcacacatttcacttctcagaatacacaatgctgggctcttggaaaaggcattcaatagaactttcatgtccctgataggtcccagatagccggtttaactgagagacataatggtctcctcaaacaactccttttcaaattccagtccgacaaataaacccctaaatgggtctctatcttgccccaggccttaacctctcttaattcaaggccccttggccgactcacacctcacaactttaaaaaaanaaaaccttcccatcgccctttcctatatttaaagngggatatgtctcacctccatgtntatgaagactcattatatatgaggccctttaataatgtctcctcctatctttataaattttcgatcttgcccccatcccataagggctggaggccagatcgagggcgcatactctcctgggacccattaaccatagattgtcccacaggccaggcagctgctcatctgatatgggacccatttgaacctaaacttccaccacccaaaaaccttcctcaatatttgggttataagaggtggataattaatccgggctctccctctgatcccctccaggaaattaaaattagtnctccagggccattcccacagacagtgtggactaccaagaagggagatagaaaactccacttagtaaatnaaaatcacattcggagataataatggaatcaacaccatatcccataatgacaaaaccagacaacccctccttggtaataatacatgccagggganaagaaaatcaacatcaaacaacaaaancctgtcaggtgcagctgcacaccattctgttgactgttggtcttattactactggtttgggtgctttcattggtttacaatccggaggcccaaaccctccaagtaagccattgtttcaaccaaacatggcaaatgctgaggcccacatgccatcgagtttggctaatacaagccctacagcccaaagacctcgccggcttgcccgtcaccaaccaaaccgacaactgaggcaaagggcccatagtaattggctaaattggagggcctgcctacaggctaatgctggagctccagcctcagccncagatattttaattggcaaacaacctgacaccctattaacnacatgcacccaaatcaggccatatgatttaaaacctatttgcagcagaacccctctcatcacccatctgggcaaaaccttggactgttgggagcttttagattcggccgcccttaattggggctttaattgtgccagtcaggttccggcactttggtccaattacaacagtatnncagatgccgaatcacctttctgctgtgcacccacaaagcccttgacttaaaagatatttgcaagtcaagctcccaggcgcaacgattgccttcaaattccacaagcggctcagcctcgttataatatagtgaccacaaaaatgtggcccacatcaactcgagtgggtacccacttgaaaaggataccccagtcccacatcccagatgacatcgccccggcccaaganctcaccgctggagatgacttcgacaccccgaccccatnttggagatgacttcacctcagacactaaaacctccgccccagcgacgcccatgggctgcctctcctaaggcgcaaaatggacacgggacatttattgcttttcttctttgataagattctatgtttttcctgagctcactgtctgcttagcccatgatcctggtatactccttgctctctgcccaaagtacacccctacactcccatgcctaaagggaaatctggtagaggttactactntncctctaaaattaatggagattattgctttccccaggaggcacctgcctcatatcagtcaaccccttgaccccctggggagaggaccacccactccccggtgcctcctnctcctacnaccccntccagctttccaccgcgacctcccgccttgctctccgaccatgaccaccacaaccactccttccccttggttaacacaataccactaatctttacatatactttactaaattatcagttcataccctccaacaacataactgccggacctgccaccttgacccgagaatacnccnagntattattgtcataaaaacnttactgaatantagcccatgncctttnnancatancttactgnacttgtcnnngcccttaactcaggaatacaccaagatattatcggcatacaaattaatagtnanacttttagaacacnctacaactccacnaagatattgttagagaccccaaaatttcagacctattttnctggntaatgccatataaatgggaaacttagttacgggncagcctgcaaggactccttatacttctacttgttttcttcctttctactgtcataataaaatgttttctatgcatgtttagggnaacttatgccctactntttaaaagtctccactactatttaggccactcaaatacccctaataattgatgtcaaaaccgacgtcaagacanaaaggggtcaactaaacatactggtttt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 18 99.0 Highly correlated
2 ZNF766 13 43.0 Weakly correlated
3 ZNF589 8 28.9 Weakly correlated
4 ZFP37 7 99.0 Highly correlated
5 ZNF394 7 99.0 Highly correlated
6 ZNF324 6 99.0 Highly correlated
7 ZNF2 6 99.0 Highly correlated
8 ZNF723 6 15.2 Weakly correlated
9 ZNF175 6 94.0 Moderately correlated
10 ZIM3 6 87.0 Moderately correlated
11 ZNF735 5 28.9 Weakly correlated
12 ZNF558 5 99.0 Highly correlated
13 ZNF101 5 43.0 Weakly correlated
14 ZNF534 4 19.6 Weakly correlated
15 ZNF490 4 43.0 Weakly correlated
16 ZNF8 4 99.0 Highly correlated
17 ZFP69B 4 99.0 Highly correlated
18 ZNF197 4 99.0 Highly correlated
19 ZNF584 3 99.0 Highly correlated
20 ZNF264 3 99.0 Highly correlated
21 ZNF257 3 0.0 Weakly correlated
22 ZNF263 3 180.0 Weakly correlated
23 ZNF75D 3 94.0 Moderately correlated
24 ZNF547 2 74.0 Weakly correlated
25 ZNF674 2 99.0 Highly correlated
26 ZNF727 2 19.6 Weakly correlated
27 ZNF554 2 99.0 Highly correlated
28 ZNF736 2 43.0 Weakly correlated
29 ZKSCAN8 2 160.0 Weakly correlated
30 ZNF792 2 94.0 Moderately correlated
31 ZNF425 2 94.0 Moderately correlated
32 ZNF605 1 99.0 Highly correlated
33 ZNF133 1 99.0 Highly correlated
34 ZNF777 1 319.0 Weakly correlated
35 ZKSCAN1 1 160.0 Weakly correlated
36 ZNF182 1 99.0 Highly correlated
37 ZNF705D 1 28.9 Weakly correlated
38 ZNF705B 1 28.9 Weakly correlated
39 ZNF700 1 28.9 Weakly correlated
40 ZNF695 1 28.9 Weakly correlated
41 ZNF91 1 6.0 Weakly correlated
42 ZNF679 1 28.9 Weakly correlated
43 ZNF671 1 94.0 Moderately correlated
44 ZNF616 1 43.0 Weakly correlated
45 ZNF610 1 28.9 Weakly correlated
46 ZNF337 1 43.0 Weakly correlated
47 ZNF18 1 160.0 Weakly correlated
48 ZNF560 1 43.0 Weakly correlated
49 ZNF549 1 87.0 Moderately correlated
50 ZNF519 1 19.6 Weakly correlated
51 ZNF506 1 28.9 Weakly correlated
52 ZNF454 1 99.0 Highly correlated
53 ZNF44 1 43.0 Weakly correlated
54 ZNF429 1 28.9 Weakly correlated
55 ZNF28 1 28.9 Weakly correlated
56 ZNF350 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF735 4 28.9 Weakly correlated
2 ZNF723 4 15.2 Weakly correlated
3 ZIM3 3 87.0 Moderately correlated
4 ZNF534 3 19.6 Weakly correlated
5 ZNF263 2 180.0 Weakly correlated
6 ZNF490 2 43.0 Weakly correlated
7 ZNF75D 2 94.0 Moderately correlated
8 ZNF382 2 99.0 Highly correlated
9 ZNF766 2 43.0 Weakly correlated
10 ZNF264 1 99.0 Highly correlated
11 ZNF549 1 87.0 Moderately correlated
12 ZNF736 1 43.0 Weakly correlated
13 ZNF679 1 28.9 Weakly correlated
14 ZNF429 1 28.9 Weakly correlated
15 ZNF44 1 43.0 Weakly correlated
16 ZNF257 1 0.0 Weakly correlated
17 ZNF133 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats