ZRdb KZFP & Repeats
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LTR_HERVL32

  • Name
    HERVL32
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000200
Description :

The associated long terminal repeat is LTR32.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
attggcgagccagccaggaggtcggagaaaatcccgtgagcgccgagacgatgggatcggggaaggggaaatccgcgggggaaatcccgggctggccgtccacgtctatgtggggcccgatagccgctatccttgatggatggggcccaccgcgtgagtacggggacgcccccaaaacgccgaagggtctggaagagctgttgcagggggtggatctaactaagcgaaggtcagatgcccgagctgtggcagccgcggttggctggccgctcctgtgtgccgagcagccacngaggctgagctcgcggcacaggcgagggtncgtcagttacaggacgagctgcgactagaaagagatgccagattagctcaggctgaaacgtcggagaccttactgtcccgcctgcgggnacaggatgacaaaatggagaccctggcttgtcgggtagcccgtttgaagggtcgccggctgccacgtcgacgagtcagggctatcatgactaaatcgtcctgggaccctaagtcctgggaccccatggagagctctagtggggaggagagcgaggactgggacgagcccatagaggttcccatcctctctgcgcgtccgntggtcaccaccaagataaaagcggaccccgcagngggtagccccacaagacttgccccgcctgaaagacggcagcgcgccacaatgcgggactgcaccactgtggaactgggaaataggttcaggcagaaggggagagagtcgatcgcggggtggcttctccgtctatgggacatgggggcggagggtattatactctccggactcgagatgagtaaaatggcatccatcacaaaccacccggccctgaggcagcacctctgtggcgccagtaatgaggatcgggccatccccctccttagctgggtggttgtgggctgcaaggcggcctggccaaatgagggagacgtccccacgtctcctttgcgatgncagactatggaggaattgccggacatcctctgggaattagggatgaagcatgctgtcnncgnntatgctgagcattaccaaggtcccaacaatgagcttttcactgccggcacgaaagacgatcttgnagtcggcacccaaccaatggtatggcgcgctagtgtctatcctgagccccctggtaggacagccagtgtctcgggcggcccaagcggccnccgacttaggggaaatagaaactgcgtgggcgaggggtgtgcgctgctggatgaaagacaagggagccaaaggaaannnnnnggagacggccaaggggcccatcagggtgacccgccgacaaatgtgggcgacctggtagtggcagggacacctactgcgaaaacagataanacagcctaatgctgttctggtcggactgtggcagaagctcaagccagaacagcgcttcactaaggagcctcaggttcagcccaccgcccctcccgcagagggatggcaggcgccaacccctttagactaggatgaaggccaaggccccagaatcccgataagagcaatggtggccagggaccggaggccacatgtagaaactatatattggtcacctaagaatagactgtgcntgccctagtggatactggagccgaatgcactcatatatggtaacattcatcggttccaagggcctataacagcaatagatggtnangggcgacggggaatgaggtagacaggttgaactagtattacaagttgggagactgccaccaaaaccctatttagtatacatagctcccatcccagaatacatcttgggaatggatatcttatcaggcttgaccctccaaactgccggggaattccgactgagagttagggtggtgaagcgtgatcangggaacgcgaaatggacaccggtacagttgccnagccccgcggcgagtagtagcgctgaagcaataccgcctgcgagtggggnnngggggcatgatgaaatcacggggantgttaaggagttagcccgggtaggcattataaggccagtnncgcacagcccatacaacagccctgtatggcccgtgcggaagcctgatgggacatggagaatgacagtagattaccgggaattaaaatatcacctcccttctgacgagggtaggagaggcgctnggcacataccattttgttatcgatttagccaagccttcttcagcatccccattgccccagagacaagaccaatttgcattcacctgggaaggagaacaatggacctttaccgtcttgccccagggatatttacatagccccactatctgtnacggcctagtggccgcagacctcanacgtcggtcgatggaccgccccggagggggtacatgttttccattacattgatgatatcatgctaagtctttttccagcttacaaactgcagccccgcccccgnnncgnnnncgnncgncgnccgnncccaccttgctgtctcacttggcgaacagaggatgggcagcgcagacagtccagggtccaggcttatcaaatactnggtgtcatctggtcgggtaagactaaagtcacgntnttccgtctgccgttatggataaggtgcaggcctacccacgtcctaccacaccaaagcagttgcaaaccttcttaggccttctagggtattggtccttttattccccatttggcccaactccttaggcccccataccgcttagtcaagaagggggcccactgggactggtccacaaaggaggatgaggcctttgaacaagctaaagtcgcagtgaaacgaatacaagccttgggagttctagtgcagggacagccttgtgaattggacgtagccagttaccctgaggggtgtgcctttaggattctggtcccaactatggaagggggctgaagttagatatagcgtcatggagcaacaactctgcgctacatattatgccttacaacangnggacgttacaaagggggtcccggtgctagtacgcacccagtaccccatagcaggttggctgaaggataccttccagaaaccgaagtctgggaatgcccagacacagatgtggccaaatggcatgcatgcctgcaacanncgnctncgancanagggagcacattaatagccccttgagcgcagagctccattcggtgcttggccctgtcacctatgtgacaactgaaggacagtctttgacggaggccgctgaaccaggtttaatcaactcccaagcgcttggaaaaactttctatacagtatgattgttattatattcgttattcttttttgttggtagtttgtattgctgctgcggcatctggctgcaancgntgctcctccgcatacctggccccaggaaatcgcggaagaanggcgtgataagaatgtgagggccattcaagggtatgctggggtgg
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 5 15.2 Weakly correlated
2 ZNF382 4 99.0 Weakly correlated
3 ZNF429 4 28.9 Moderately correlated
4 ZNF766 3 43.0 Highly correlated
5 ZNF735 3 28.9 Moderately correlated
6 ZNF197 2 99.0 Weakly correlated
7 ZNF251 2 94.0 Weakly correlated
8 ZNF263 2 180.0 Weakly correlated
9 ZNF75D 2 94.0 Weakly correlated
10 ZNF589 2 28.9 Moderately correlated
11 ZNF680 2 28.9 Moderately correlated
12 ZNF793 1 99.0 Weakly correlated
13 ZFP69 1 99.0 Weakly correlated
14 ZNF682 1 28.9 Moderately correlated
15 ZNF679 1 28.9 Moderately correlated
16 ZNF334 1 99.0 Weakly correlated
17 ZNF175 1 94.0 Weakly correlated
18 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 5 15.2 Weakly correlated
2 ZNF429 4 28.9 Moderately correlated
3 ZFP69 1 99.0 Weakly correlated
4 ZNF175 1 94.0 Weakly correlated
5 ZNF197 1 99.0 Weakly correlated
6 ZNF589 1 28.9 Moderately correlated
7 ZNF766 1 43.0 Highly correlated
8 ZNF679 1 28.9 Moderately correlated
9 ZNF75D 1 94.0 Weakly correlated
10 ZNF735 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats