ZRdb KZFP & Repeats
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LTR_HERVL

  • Name
    HERVL
  • Repbase
    HERVL
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000198
Description :

The associated long terminal repeat is MLT2 and its variants. HERVL hasa potential leucine tRNA primer-binding site . The deduced proteinsequence and phylogenetic analysis from indicates that the HERVL polgene is related to those in foamy retroviruses.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gattttggtaccaggagtggttctagaggaacagaatattaaggatggagttctttcgttggttttggggtttctggagttggctgcttaatatgattagacccaaaaatgctaaggactctacttctaatagtatggagaacactgatagtccttggcgtgaactgtttagagagttatgcaaaataaatgcatttgacactcctgattcaccgctcgtgagaggcaaggagtttagtgactctatacataatacctttgaccatatgtggagaaccaaggaacataatgaagctggttggttgctcctaagttcagtggacaaagtgatgaaagaaaatgatgaactcagggattctatctcccggcttcagaagcagatactgagcctcaaatctgctaagattgccctgagtgagagtcttatctcctgtagagaaagagctgaaattgtggaaaaacagacacaagctcttatcatgcgagtggctgacctgcaacgaaaggtgcatgcacagcctcgccaggtgtctactgttaaagtgagggcattgattggaaaagaatgggaccctgcaacttggaatggggacgtgtgggaggaccctgatgaagctggggacactgagtttgtaaactctgatgaaccttttttgccagaagaaacagcttccccatccccagtagtggcaacatcccctccccgacccatgctgccatcagcctttccacctttgtctgaggagataaaccctgcgctgcctgaggcaacagtgatggcctcccctgaggcagttgccaggcaagataatgttgattctcctcaggagccacccccaacacccctgtttgcttctagacctataactagactaaagtcccggcgggcccctagaggtgaggttgagagtgtgacccatgaggaggtgcgctacactcgaaaagaactgcttgagttttctaatttatataaacagaaatctggagaacaggcatgggaatggatattaagggtgtgggataatggtggaaggaacatagagttggatcaggctgaatttattgatttgggcccactaagtagggactctgcatttaatgttgcagctcggggagttaaaaaaggttctaatagtttatttgcttggttagctgaaatatggattaaaagatggcccactgtgagcgagctggaaatgcctgatctcccttggtttaatgtagaggaagggatccaaaggcttagggagattgggatggtggagtggattagtcactttagacctactcatcccagctgggagggtccagaagatatacccttgaccaatgccttgcgaaatagatttgtgagggcagcacctgcatctttgaagagccctgtaattgctcttctctgtatgtcagatctaacagtgggaaccgcagtcactcaactacaaaatttaaatacaatgggaataattggatcccgaggtggcaggggccaagtggcggcactcaaccgtcaaaggcaaggtgggcgtagctaccgtaatggacagcagaggcaaagcggcaatcagaatagtctgactcgtgtagagctctggcattggctaattaatcacggtgttcctagaagtgaaattgataggaagcctactgcattcctacttaatttatataagcagaaaacttctaggtcgaatggacaaaagactaatttgaattataaaaacagagaatcacggcccctcaatcaatttccagacttgagccagtttacagacccagaaccccttgaatgaaggggaggccgggtccccttgaggaaggaccccactacactaccgacaatttatgcngtgaatctttctcccatccttccccaaggagacctccggccttttaccagggtaactgtgcactggggaaagggaaatgatcagacatttcggggactactggacactggctctgagctgacgttgattccaggggacccaaaacgtcattgtggtcctccagttaaagtaggggcttatggaggtcaggtaattaatggagttttagctcaggtccgacttacagtgggtccagtgggtccccggactcatcctgtggtcatttccccagtgccagaatgcataattggcatagacatacttagcagctggcagaacccccacattggctccctgactggtagggtgagggctattatggtgggaaaggccaaatggaagccattagagctgcctctacctagaaaaatagtaaatcaaaaacaatatcgcatccctggagggattgcggagattagtgccaccatcaaggacttgaaagacgcaggggtggtgattcccaccacatccccgttcaactctcccatttggcctgtgcagaagacagatggatcttggagaatgacagtggattatcgtaagcttaaccaagtggtgactccaattgcagctgctgtaccagatgtggtttcattgcttgagcaaattaacacatctcctggtacctggtatgcagccattgacttggcaaatgcctttttctccattcctgtccataaggcccaccagaagcaatttgccttcagctggcaaggccagcaatatacctttactgtcctacctcaggggtatatcaactctccggctttgtgtcataatcttattcggagagaccttgatcgcttttcgcttccgcaagatatcacactggtccattacattgatgacattatgctgattggatccagtgagcaagaagtagcaaacacactggacttattggtgagacatttgcgtgccagaggatgggaaataaatccgactaaaattcagggaccttctacctcagtaaaatttctaggggtccagtggtgtggggcctgtcgagatattccttctaaggtgaaggataagttgctgcatttggcccctcctacaaccaagaaagaggcacaacgcctagtgggcctatttggattttggaggcaacacattcctcatttgggtgtgttactccggcccatttatcgagtgacccgaaaggctgccagttttgagtggggtccagaacaggagaaggctctgcaacaggtccaggctgctgtgcaagctgctctgccacttgggccatatgacccagcagatccaatggtgcttgaggtgtcagtggcagatagggatgctgtttggagcctttggcaggcccccataggtgaatcacagcggaggcctctaggattttggagcaaggccctgccatcttctgcagataactactctccttttgagagacagctcttggcctgttactgggctttggtggaaactgaacgtttgactatgggtcatcaagtcaccatgcgacctgaactgcctatcatgaactgggtgctttctgacccatctagccataaagtgggtcgtgcacagcagcattccatcatcaaatggaagtggtatatacgtgatcgggctcgagcaggtcctgaaggcacaagtaagttacatgaggaagtggctcaaatgcccatggtctccactcctgccaccctgccttctctcccccagcctgcaccgatggcctcatggggagttccctatgatcagttgacagaggaagagaagactagggcctggttcacagatggttctgcacgatatgcaggcaccacccgaaagtggacagctgcagcactacagcccctttctaggacatccctgaaggacagcggtgaagggaaatcttcccagtgggcagaacttcgagcagtgcacctggttgtgcactttgcatggaaggagaaatggccagatgtgcgattatatactgattcatgggctgtagccaatggtttggctggatggtcagggacttggaagaagcatgattggaaaattggtgacaaagaaatttggggaagaggtatgtggatggacctctctgagtggtcaaaaactgtgaagatatttgtatcccatgtgagtgctcaccaacgggtgacctcagcagaggaggattttaataatcaagtggataggatgacccgttctgtggacaccactcagcctctttccccagccacccctgtcatcgcccaatgggcccatgaacaaagtggccatggtggcagggatggaggttacgcatgggctcagcaacatggacttccactcaccaaggctgacctggctacggccactgctgagtgcccaatttgccagcagcagagaccaacactgagccctcgatatggcaccattcctcggggtgatcagccagctacctggtggcaggttgattatattggacctcttccatcatggaaagggcagaggtttgtcctcactggaatagacacttactccggatatgggtttgcctatcctgcacgcaatgcttctgccaagactaccatccgtggactcacggaatgccttatccaccgtcatggtattccacacagcattgcctctgaccaaggcactcactttacggctaaagaagtgcggcagtgggctcatgctcatggaattcactggtcttaccatgttccccatcatcctgaagcagctggattgatagaacggtggaatggccttttgaagtcacaattacaacgccaactaggtgacaatactttgcagggctggggcaaagttctccagaaggccgtgtatgctctgaatcagcgtccaatatatggtactgtttctcccatagccaggattcacgggtccaggaatcaaggggtggaagtggaagtggcaccactcaccatcacccctagtgatccactagcaaaatttttgcttcctgttcccgcgacattacgttctgctggcctagaggtcttagttccagagggaggaacgctgccaccaggagacacaacaacgattccattaaactggaagttaagattgccacctggacactttgggctcctcctacctttaagtcaacaggctaagaagggagttacagtgttggctggggtgattgacccggactatcaagatgaaatcagtctactactccacaacggaggtaaggaagagtatgcatggaatacaggagatccattagggcgtctcttagtattaccatgccctgtgattaaggtcaatgggaaactacaacagcccaatccaggcaggactacaaatggcccagacccttcaggaatgaaggtttgggtcactccaccaggaaaaaaaccacgacctgctgaggtgcttgctgaaggcaaagggaatacagaatgggtagtagaagaaggtagtcatcaataccagctacgaccacgtgaccagctgcagaaacgaggactgtaattgtcatgagtatttcctccttcttttgttaaaaacatgtttgtgcatgtatacacttgtactaagaaaatatcttcattttatttcctttctcctttatcatgtgacataagatttattgacttcatatcagcatttaagtattgttaactttatgtaatagtatttgggttggggattggtgcgtttccggttgtacgaaggatagttgtattatgttaggcgtaattatgaccttattattgtctttatttgaagattatgtatgatctcaggagatgtgtatgggttcaagttgacaaggggtggact
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF485 333 94.0 Weakly correlated
2 ZNF302 227 43.0 Weakly correlated
3 ZNF157 202 99.0 Weakly correlated
4 ZNF723 196 15.2 Weakly correlated
5 ZNF382 182 99.0 Weakly correlated
6 ZNF671 79 94.0 Weakly correlated
7 ZNF274 77 99.0 Weakly correlated
8 ZNF479 57 6.4 Weakly correlated
9 ZNF257 49 0.0 Weakly correlated
10 ZNF766 49 43.0 Weakly correlated
11 ZNF707 34 74.0 Highly correlated
12 ZNF317 27 99.0 Weakly correlated
13 ZFP57 27 87.0 Weakly correlated
14 ZIM3 23 87.0 Weakly correlated
15 ZNF589 21 28.9 Weakly correlated
16 ZNF554 20 99.0 Weakly correlated
17 ZNF679 20 28.9 Weakly correlated
18 ZNF263 18 180.0 Weakly correlated
19 ZNF197 18 99.0 Weakly correlated
20 ZNF490 14 43.0 Weakly correlated
21 ZFP37 13 99.0 Weakly correlated
22 ZNF793 13 99.0 Weakly correlated
23 ZKSCAN8 13 160.0 Weakly correlated
24 ZNF549 12 87.0 Weakly correlated
25 ZNF429 12 28.9 Weakly correlated
26 ZNF394 12 99.0 Weakly correlated
27 ZNF584 12 99.0 Weakly correlated
28 ZNF175 12 94.0 Weakly correlated
29 ZNF680 11 28.9 Weakly correlated
30 ZKSCAN1 8 160.0 Weakly correlated
31 ZNF597 8 94.0 Weakly correlated
32 ZNF506 7 28.9 Weakly correlated
33 ZNF735 7 28.9 Weakly correlated
34 ZNF2 7 99.0 Weakly correlated
35 ZNF528 7 43.0 Weakly correlated
36 ZNF701 6 28.9 Weakly correlated
37 ZNF18 6 160.0 Weakly correlated
38 ZNF75D 6 94.0 Weakly correlated
39 ZNF558 6 99.0 Weakly correlated
40 ZNF534 6 19.6 Weakly correlated
41 ZNF347 5 43.0 Weakly correlated
42 ZFP69B 5 99.0 Weakly correlated
43 ZNF251 5 94.0 Weakly correlated
44 ZNF133 4 99.0 Weakly correlated
45 ZNF92 4 28.9 Weakly correlated
46 ZNF519 4 19.6 Weakly correlated
47 ZNF320 4 28.9 Weakly correlated
48 ZNF30 4 94.0 Weakly correlated
49 ZNF28 4 28.9 Weakly correlated
50 ZNF563 3 28.9 Weakly correlated
51 ZNF101 3 43.0 Weakly correlated
52 ZNF684 3 99.0 Weakly correlated
53 ZNF585A 3 99.0 Weakly correlated
54 ZNF471 3 94.0 Weakly correlated
55 ZNF182 3 99.0 Weakly correlated
56 ZNF486 3 8.6 Weakly correlated
57 ZNF248 2 99.0 Weakly correlated
58 ZNF254 2 43.0 Weakly correlated
59 ZNF778 2 74.0 Highly correlated
60 ZNF823 2 43.0 Weakly correlated
61 ZNF324 2 99.0 Weakly correlated
62 ZNF331 2 94.0 Weakly correlated
63 ZNF100 2 28.9 Weakly correlated
64 ZNF214 1 99.0 Weakly correlated
65 ZNF140 1 99.0 Weakly correlated
66 ZNF441 1 43.0 Weakly correlated
67 ZNF816 1 28.9 Weakly correlated
68 ZNF808 1 19.6 Weakly correlated
69 ZNF799 1 43.0 Weakly correlated
70 ZFP28 1 99.0 Weakly correlated
71 ZNF792 1 94.0 Weakly correlated
72 ZNF789 1 99.0 Weakly correlated
73 ZNF786 1 99.0 Weakly correlated
74 ZNF557 1 15.2 Weakly correlated
75 ZNF430 1 19.6 Weakly correlated
76 ZNF560 1 43.0 Weakly correlated
77 ZNF677 1 99.0 Weakly correlated
78 ZNF730 1 19.6 Weakly correlated
79 ZNF571 1 99.0 Weakly correlated
80 ZNF716 1 19.6 Weakly correlated
81 ZNF184 1 99.0 Weakly correlated
82 ZNF705D 1 28.9 Weakly correlated
83 ZNF124 1 43.0 Weakly correlated
84 ZNF700 1 28.9 Weakly correlated
85 ZNF695 1 28.9 Weakly correlated
86 ZNF334 1 99.0 Weakly correlated
87 ZNF605 1 99.0 Weakly correlated
88 ZNF610 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF485 327 94.0 Weakly correlated
2 ZNF302 212 43.0 Weakly correlated
3 ZNF157 203 99.0 Weakly correlated
4 ZNF723 189 15.2 Weakly correlated
5 ZNF479 46 6.4 Weakly correlated
6 ZNF257 33 0.0 Weakly correlated
7 ZNF707 18 74.0 Highly correlated
8 ZFP57 15 87.0 Weakly correlated
9 ZIM3 15 87.0 Weakly correlated
10 ZNF549 12 87.0 Weakly correlated
11 ZNF490 11 43.0 Weakly correlated
12 ZNF317 10 99.0 Weakly correlated
13 ZNF274 9 99.0 Weakly correlated
14 ZNF671 9 94.0 Weakly correlated
15 ZNF263 9 180.0 Weakly correlated
16 ZNF382 9 99.0 Weakly correlated
17 ZNF554 8 99.0 Weakly correlated
18 ZNF793 5 99.0 Weakly correlated
19 ZNF597 5 94.0 Weakly correlated
20 ZNF75D 5 94.0 Weakly correlated
21 ZNF347 4 43.0 Weakly correlated
22 ZNF534 4 19.6 Weakly correlated
23 ZNF506 4 28.9 Weakly correlated
24 ZNF735 3 28.9 Weakly correlated
25 ZNF680 3 28.9 Weakly correlated
26 ZNF133 3 99.0 Weakly correlated
27 ZNF429 3 28.9 Weakly correlated
28 ZNF679 3 28.9 Weakly correlated
29 ZNF684 3 99.0 Weakly correlated
30 ZNF766 2 43.0 Weakly correlated
31 ZFP69B 2 99.0 Weakly correlated
32 ZNF589 2 28.9 Weakly correlated
33 ZNF558 2 99.0 Weakly correlated
34 ZNF528 2 43.0 Weakly correlated
35 ZNF585A 2 99.0 Weakly correlated
36 ZNF197 2 99.0 Weakly correlated
37 ZNF584 2 99.0 Weakly correlated
38 ZNF320 2 28.9 Weakly correlated
39 ZNF677 1 99.0 Weakly correlated
40 ZNF789 1 99.0 Weakly correlated
41 ZNF695 1 28.9 Weakly correlated
42 ZFP37 1 99.0 Weakly correlated
43 ZKSCAN1 1 160.0 Weakly correlated
44 ZNF2 1 99.0 Weakly correlated
45 ZNF140 1 99.0 Weakly correlated
46 ZNF716 1 19.6 Weakly correlated
47 ZNF471 1 94.0 Weakly correlated
48 ZNF182 1 99.0 Weakly correlated
49 ZNF331 1 94.0 Weakly correlated
50 ZNF823 1 43.0 Weakly correlated
51 ZNF18 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF157 99.0 Weakly correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF302 43.0 Weakly correlated
6 ZNF317 99.0 Weakly correlated
7 ZNF479 6.4 Weakly correlated
8 ZNF485 94.0 Weakly correlated
9 ZNF490 43.0 Weakly correlated
10 ZNF549 87.0 Weakly correlated
11 ZNF554 99.0 Weakly correlated
12 ZNF671 94.0 Weakly correlated
13 ZNF723 15.2 Weakly correlated