ZRdb KZFP & Repeats
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LTR_HERVKC4

  • Name
    HERVKC4
  • Repbase
    HERVKC4
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000197
Description :

The associated long terminal repeat is LTR14.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttctggcgcccaacgtggggcccgaaagaatctggtgaaggaacgctcaagcgtgtgaaacggagggccgacggacgaaggactcccgaggacgaaaaagttttaagctctgcaggtaagcggggcgctcggagaaagccagggacacaatgggaaaaactgaaagtaagtacaccacgtatttgagcttgctacggcagctcttgaagcgtgcacggtggggtaaaagttgatacggaaaatcttatggatttgtttcatgctgtggaacaattttgcccttggttcccngaacagggaactttggaattaaaagattgggaaagagttggaaaggaccttaaaagagcacgtagagaaggaaaggaaattcctttgcctgtttggtcagtttggtcattggtgcgtgcagcactggagccttttcagacagatgatgaggctgagtcagaggaggagagagaggagtttgataatcaggactctgaaccgcctctaccgagtactagcnaaaaggagagtccggaggtgatttatgccaatccccccggtctccctaaacctactcagaaaatcgttcagcccacggctccttcagaggaatgtccggaatggccacctcctcctcagccgagtgagtgcngggggagggagcccgagactcggctcgccgcgcccattattgcccgacccgcagttcattacggngagggggcaattcaggctcgccctgcagttattacggtgaaggagcaatttcccttaaaatggatgacccagcgccctgtctgggtcgaacagtggccgctccctaaggaaaagttgggggcgctttatgaaataaactactagaaaaaggacatatttcacccactttctctccttggaattccccagtatttgtaattaagaaaaagtccggtagatggcgtcaacgctgtaattcaaccgatgggagccttacaaccngggctcccatcccccaccatgctccctaaagactggccgcttgttattatagatttaaaagactgcttttttacaattcctttagcagaggcagatttcgaaaaatttgcctttaccatccctgccgttaataacaaagaacctgcagccagatatcattggaaggttttaccccggggtatgttaaacagtcccacagtttgtcaaacttttgtaggcagagctatccagcctgttagagatcaatttccagatttgtgcagcaaaaaatagagaccaacttattcaatgttattcatctttgcaaaaggcaattacaaacgctggattgcttatagcacctgacaaaattcaaacaaccactccttttcagtatttggggatgcaagtacaggatagagccattaagcctcaaaaggttcaaattagaagagattctttaaaaaccttaaatgattttcaaaaattgttaggagatattaattggattcggcccaccttaggaattcctacttacgctatgtctaatctcttctcaatattgaggggagattccaacttacacagtaaaagagaactaacacccgaggccatgaaagagttaagagtaattgaagaaaaaattcagcaagcccaggtcagtaggattgactcagacttgcctttacaattcattgtgttccctacttcacactnnccncacgnnnatgggggttattgttcaaaatgatgatttagttgaatggtcctttttgccacataataccataaaaacacttacagtatatttagatcagatggcaattctaattggacaggctcgtatacgaattgttaaactttgtggcactgagcccaataaganttatagttccaataaataaaaatcaggttaaacaggcatttattaactcagttacatggcaagttaatttagcagaatttgttggatgtattgataatcattatcctaaaaactttccagttcttaaaattaactacataggttcttccgaaaattactcgtgatgcccctttggaaggagccgtgactgtttttactgatgggtctggtaaacatggaaaagcggcagtctggtagagaccacataattcaatcactcgatctgagtttactagcactcagagagctaaggttactctgtttatttattaaagaacttttacagccttaagttcgctctggagcccacnctgtgtgctctttttctccgacttcagcaattgctagaccaangtacacatcctatttttattacacacattcgagcccacagctcnctgcctggcccattggcttatggcaataatcaagcagaccttcaggttatgacatcactgcttgaccaagccacccaatcgcatcaatttttccaccaaaattggagaaacttatctaaacaatttcaacttacncagaggctggctaaacaaattatcctacaatgcccagattgccagctcacaggcacgtcccctccttcaacaggtgttaaccctagaggattagaacctaatcagttgtggcaaacagatgttacacacatcctgaatttggaaaactaagatatgtacatgtatccgttgataccaacactcatctaattantgcacatttaaaaaaataaaagtaaaaaaaagactaaganagaaatcgaaaaaanacgaaaaagtaaaaaaatttaaaaagttataaaaatgcacctttagtaagaaaattataaaacatagaaagttaagacatgttgaagattgtctgtgaaagtcgtgaaaaangttataaaaaatttatgcaggaaangttgtataattttgttttgaaggtctaaacaagttttaaaacgntaattgtaaaaaattctgtgtgtaaacatattggctaaagttaaaaaggtatcatccagttttctgtaaactagacattaaaataaagcacaagtttttcttaaagcactaacctgctctttaaagattgtaaaaagtctcttagcacaggcaccacccctagaatttccagtaccagcctggagactacgtcctcatcaaaggatggaaagntaaaaaagaaaaaaacactcgagccagcctaagaaagaccctacaggacccgcagcctcaacgatgcggcttccacggacaacacaggccccagacattatgctgaagaagcagaagnctaagccaaataatttattcntttttaattctctcactttgcctgctacctgtacctgctacactctattaagctcatctcttaaatccgcctttcttccgccctgttacttnggcaaacacccccttcccagcttctaacaacgtaactgcttggctagaagggattaacatacccccagtggggttccttagtaacggcacacatcgaactgaggtgccaagtaacactacaggtcactccttgactggaaaagaatgttgctaattatactcatgtttgtcttatgttatttactaattctaggatgcaaagccggaataagagcagtgaccgccncgcctgacaaacctgtngctgcaacagaccaaaattatacctattgggcatatgtcccattcccgcctttaattaggcctgtcacatggttggaacccccggttgaggtttatgttaataatagtgtttggatgcctgagcctacagatactcatgggccctctcacccagaggagaaaggaannngttaataaatgtgtccatgggttatcagttcccccctctttgcatagggccggctatcggttgcctaaaaggctaccgacaacattggctagttaaaattccaggtcataatcaaagaccagtatcctatcatttattttctggatggagcccggatcattcacagagttcggttcaattaacagtttaagcccagaaaagagaggtgtcaacaacctcaacaatggtcaaaagatttagaaatattgatttgaaagaattgcatctctgatcacactgtggtactgcaaaataattcctatggaatcgtcattaattggtcccctaaggggacctttgcagttaattgtaccaatcaaaatgatagatgcaagacaaaactaaaacaggaactatactatcaaagagatgacactacttacactgaaaaacgtgctcattttcccataatttggaccaattttggtacggccggcccacatccaaaaatgattaatccaataataggccctaaacatcccgaattatgaaagttaatgatggcccaatctcatattcgggtttggaaaaaaanatattatcttnnganggagaaggtgagagacttcaatttgcgtatcagttttcttccaacagaacagtgcccattcagagttgtgtcaagcctccttttatgttgatggtcagaaatattaatattcgacctaattctcaaactattacttgtcaaaactgtcgccttttcacctgtattgattccacgtttggtgtaaaaacatctgtgttgctggtgagggctanagaaggagtttggataccggtttccctcaatagaccttgggaagcctctccttccattcatatcgtcacagaaatgttnnnaaagggagtgtttaccaaaacaaaaagatttatttttacccttataacagtcttatgggccttattgcagtcacagctactgctgcggctgctggaattgctttacactcctctgttcaaactacaaaatatgtaaataattggcaaaaaattcctcaaaattgtggaattctcagacccggatagaccaacaattgacaaatcaaacaaatgatcttagacagactgttatttagatggaagatcgtataatgagcttagagcatcgattacaaatacaatgtgattgaaatacttctaatttctacataactccccattcgtataatactactaaacatcatttgaaaaaagttagacgtcatctagaagaaagaaataaaaatttaacattagatacagccaaattcgaaaagaacaggtttttaaagcatctcaggctcatttaactctcctgcctgggactgacattctcgctggagctgctgatggactttcaaacgtaaaccctcttaaatggattaagaccattagaggatcaactattgcaaattttactttaatgtgtatctgtttatactgtttgcttttagtctacaaatgcggaagacgcctctggagagagaccagacaccacgaacaagccttaatagcaatggcggttaaaaaagaaaaaangggggggggca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 7 99.0 Weakly correlated
2 ZKSCAN1 6 160.0 Weakly correlated
3 ZNF441 4 43.0 Weakly correlated
4 ZNF394 4 99.0 Weakly correlated
5 ZKSCAN8 4 160.0 Weakly correlated
6 ZNF2 4 99.0 Weakly correlated
7 ZNF28 4 28.9 Highly correlated
8 ZFP37 4 99.0 Weakly correlated
9 ZNF816 3 28.9 Highly correlated
10 ZNF324 3 99.0 Weakly correlated
11 ZNF723 3 15.2 Moderately correlated
12 ZNF766 3 43.0 Weakly correlated
13 ZNF263 3 180.0 Weakly correlated
14 ZNF197 3 99.0 Weakly correlated
15 ZNF510 3 99.0 Weakly correlated
16 ZNF610 3 28.9 Highly correlated
17 ZNF101 3 43.0 Weakly correlated
18 ZFP69B 3 99.0 Weakly correlated
19 ZNF587 2 28.9 Highly correlated
20 ZNF519 2 19.6 Moderately correlated
21 ZNF479 2 6.4 Weakly correlated
22 ZNF558 2 99.0 Weakly correlated
23 ZNF320 2 28.9 Highly correlated
24 ZNF18 2 160.0 Weakly correlated
25 ZNF175 2 94.0 Weakly correlated
26 ZNF140 2 99.0 Weakly correlated
27 ZFP57 2 87.0 Weakly correlated
28 ZNF671 1 94.0 Weakly correlated
29 ZNF695 1 28.9 Highly correlated
30 ZNF641 1 99.0 Weakly correlated
31 ZNF589 1 28.9 Highly correlated
32 ZNF92 1 28.9 Highly correlated
33 ZNF585A 1 99.0 Weakly correlated
34 ZNF557 1 15.2 Moderately correlated
35 ZNF554 1 99.0 Weakly correlated
36 ZNF528 1 43.0 Weakly correlated
37 ZNF429 1 28.9 Highly correlated
38 ZNF417 1 28.9 Highly correlated
39 ZNF284 1 43.0 Weakly correlated
40 ZNF264 1 99.0 Weakly correlated
41 ZNF257 1 0.0 Weakly correlated
42 ZNF251 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 3 15.2 Moderately correlated
2 ZNF2 2 99.0 Weakly correlated
3 ZNF429 2 28.9 Highly correlated
4 ZNF816 2 28.9 Highly correlated
5 ZNF587 2 28.9 Highly correlated
6 ZFP57 2 87.0 Weakly correlated
7 ZNF554 1 99.0 Weakly correlated
8 ZNF557 1 15.2 Moderately correlated
9 ZNF417 1 28.9 Highly correlated
10 ZNF479 1 6.4 Weakly correlated
11 ZNF382 1 99.0 Weakly correlated
12 ZNF671 1 94.0 Weakly correlated
13 ZNF257 1 0.0 Weakly correlated
14 ZNF610 1 28.9 Highly correlated
15 ZNF585A 1 99.0 Weakly correlated
16 ZNF101 1 43.0 Weakly correlated
17 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats