ZRdb KZFP & Repeats
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LTR_HERVK13

  • Name
    HERVK13
  • Repbase
    HERVK13I
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000191
Description :

The HERVK13 pol was classified in 1993 as HML-4 . The relationshipbetween the envelope proteins of HERVK13 and HERVK10 has been examinedby .
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tctggcgcccgacgtggggctctccctcgctgtgtgaagttgcaccctgagcgcgggactcagcggaggatttttcgacganagattcctgaggattgcggtcaataagcttggtggtaagcttgagcactcagagtatcccggggacaccatgggacaggccagtactaagtactcggcttatttaaacgntttataaaaactctccttaaagaaggaggggttnaagtttctactganaagttaattgaactgtttgaggtcgtagatcttctttgcccttggtttccgactgagggaactttagaacttaaacgattgggatgagattggccgacaattcaaaattgctcataaagggggacatnttatcccgcccaccatttggtcaatctgggcttcggttcgctctgtcctagactccttacagactcaggaggacaacatggagactgatccctctttcctctcctctgaggaggtcgaggaagtcctcagttctctttcccctgaggatactgcacaaattgaggccgtaattttanaggcggacctccactctgacattccttcggcgccaccacctacgccagagcctaccncgnnnnncgcgcccccgttatcgctttatgatgancttntgaatgatctctttccccaaaccagcaaaacccagctgaaacgtactntcaacagccattgcgccggaccctcctgtactgtctcagccctgctgtagggctctcaaccttccgcctgttcagcccggtaatgaggctctcaaccctatccctgttcggcccggtaatgaggccctcaatcctatctcttcacccaattctgcctttcctcttatgcatcaggctcccccgaagcctgacctgcagtccgtgcnccagcctggagttcaggccctgnagcccgtgcaccggcctggagctcaggccctgcagtcantgcagcagcctggntttcaggcccatgaaagaccgctcagcaggtaaccgcgcctcancctggcttncagnttctcgacttctctattcaaaattccaacttcttttctgctcctggtccggtcgcaactgccgttgctacccataagcaacaagttacatacatccctgaaaatgacactccncttatgagggctatnctcagggcaagggaatatggggatcccgaagcctggtttcctgtaattttacaacctccagtacctgccgcccccgnncgagcagcncccgnnncggctacaacgaatcanccacagcccgctgatcctgctcagcaggcggctgaccccgcggctcctcaagacccgcagctcagagaatcaggctcctcagccagtgcaataagggcctgctgctgcggcacagccagtacctggcattcccgctgttcaggcggtagttcagcctgaccccatncatccaggccaggttcagctacgccctgctacntgggaaagtttttcttttaaattcctcaaagatttcaaggaatcagtgaaacaatatnggcaccaactctccttttgtccgttccacattaaaagccctagcagaagataaacgtttggtgccctatgactgggaaattttagcaaaatcagtcttatctaaatcccaatatttacaattcaggacttggtgggttgatgctgtccaggaacgcattcgtcttaatcagggctctaatcctcctgttaacgttacggctgaccagttactgggaatgggtcaatgggctgcaattcganaccaaactatactaaatgatgaggttattgaacaactgcgaaaatgttgcttagatgcttgggacaagattcaagatgatggtaaagtatgcccatctttcacggccgtcagacagggacaacatgaaccctacccacgactttattgcccgtcttcaagacgcagcagaaaaggctatccctgatagccacggccaangacttgttgtagaacttatggcttatgaacaagcaaatccagattgtcaggcggctattcgccccgtcaaaggcaaaattccaccgggtggtgatatactcacctcctacattaaagcctgtgaaggggtgggaggaactctgcatacagcaatgatcatggcacaagctatggcctctattcgaatgcctggacaattctctggcaatcttcattgcggccagaagggacatgcaaaaagaaattgccctcggcgtgcaggtcgccgtcctttacancaccaaccccaaaaaactttncagcaacaagccccaccttctactntatgcccacgatgccgaaagggnantcactgggcanctcaatgccattcnagatttgatattgatggcaatcctttacggccncttaaaaaccagggaaacgggatgaggggccggcccaggcccctctaaacaatggggcattcctcaactcccagccctggcgtccagccagacgggngccttcccagttcaaccaatcgatccaaccncccaattcccacttcagcaatttgtgccacaggnccnaacgnctcagccccaacacgaatctcagtacaatgcttgtcccccgccaccacaggctcagcagcagtagatctctgttgtaccagagatatttctcttnttgcctggagagccacctattgctgttccacaggtgtttttggcccttgccgactggcagtgtcggtttgctactnggtcgctcaagcctaaatttaaaaggtgttcaagtacatactggtgtaattgattctgactattcaggtgaaattcatattgtcattagctctgcagtcccttggaatgcggcagctggggaccgcattgctcaacttctgatactcccttacattcctttaggatccagttcttgtacgagaaacggaggttttggtagcacagattatcagggcaaagcggcctactgggccagcaaaatttctgacactcgtcctgtgtgctccgtgcatattcanggaaggaagtttgagggaatgattgacacgggcgctgatgtttccattatcgctttacatcaatggccccgacactggccnaaaggagncgcgtccacagcattagttggtgttggtcaggcttcagaggtatatgaaagttccacaattttacattgcacgggcccngaggacagattggnactattcgccccctacacccattcctgttaacctgtggggaagagatcttttacatcaatggggggcacagatttcttttccacaaggcgntnacagccagcagagtaaagacattatgacaaaaatgggatttgttcaaggtatgggcttgggaaaatcagcacaaggcatcaccgcctattatacctacccataaatcagactctacaggacttggttattctttttagaagcggtcactatcaagcctccagatcccatccctttgacctgaaaactcagccggtctgggtagatcagtggccgctcccaaaaaataagctggaggcactccatattttggtccttgaacagttaaaattgggacacatcgagcnntctttttctccctggaattcacctgtctttgttatccaaaagaaatctggtnnaagtggagaatgcttactgatcttagggcggtaaatgctgtccttcagcctatggggacattacaacccggcttgccctcccccactatgattcccgagtattggccacttatcatcattgaccttaaagattgcttctttaacattcctctggcccctcaggactttgaaaaatttgctttcacngttccaacccttaacaacgtcgctcctgcagcacgttaccattggaaagtcctacctcaaggtatgcttaatagccccactatttgtcaatattatgtggggngcatattaaagccagtnagagatcaatttccccaatgttatatcattcattacacggatgatattctttgtgcagcaccttcacgctctgtattaatatcttgtttttctgcantacaacaagcagtcgcagcagctggcttggttatcgccccagaaaaaattcagacttcttctccttatcactatttaggaatgcagctagaggacaaggtcattaagcctcaaaaagttcaactcagacgagactctttaaaaactctaaatgatttccaaaaattacttggagatattaattggattcgcccctccttaggcattcctacntatgctatgtctaatctttttgcaacattacggggcgatcctgatttacgcagcaaaaggtctctnaccgnnncctcggactcctngaggcggattctgaattacgacttatagaaaaaacgattcaacggtctcaggttaccagagtgaatccacatttaccttttgaaatactaatttttcccactgaacattcaccaacaggactcattattcagggacataatttaattgaatggtgttttcttccacacagctctttacggacgcttactatttacctagatcaaatttctaccctaattggtcaggctcgttctcgtcttctncgtctttcgggacaggagccccaaaaaatcattgttcccctcacccgattacaagtccgacaggcttttgcaacctgcgtcgcttggcaagtacatttggcacgtttcccgggtataattgacaatcactatcctaatgtaaaattatttcagttccttaaactcacttcttggattttacctaacattactagaaacaccccattagctgaagctgtcactgtttttactgatgcttcctntaatggccgagcagcatatacaggaccaagagaacgtgttcttaacacaggagctatttcagcacaacgagctgagctgnccgctgttatggctgtccttgaagatttccctgaaccagttaacattgtttctgattcggcgtacgtagtacatgttgctcgcaacattgaaactgccttaaatttctgcctgatgataacctactttttctttttcaaaagtttcagtccgtgctcagagcaaggtcttctcctttctacattactcacattcgggcccacacacccctccccggacccctctcggcagcaaatgccagagctgatacattagttgctcccgtttttacggacgcgcgaaattttcatgctttaactcatgtcaatgctgcgggactccgaaanaagttccccctcacatggaaacaagctaaaaccattgtacgtcactgtcctacttgccaagtgttaattttacagccactttcttcaggagttaaccctacaaccacttccttccagagttaatcctacaccacttccttccggagttaatcctacaaccaattccttcaagtgttaatcttacagccactttcttcaggagttaaccctagaggactttcacagaacgctctctggcaaatggacgtgactcattatcctgcttttggcaagctttcttttatacatgtaactattgacaccttttctcattttatctgggccacttgtcaaacgggggaaagtacggctcatgttaaacgacatatgctttcntgtttctcggttatgggctgtcccgagaaactaaaaactgataacggccccggctacactagcgctgcttttaaaaagttcactcagacatgggcaattactcacacaactggcatcccctataactctcgaggacaggccttggtggaacgagccaataaaacactcaaagatcaacttcgnaaacaggacactaaaaagaagggggatgccgctactcctcatgctcagttaaatctggctctttttacactaaatttcttaaacctagcaagaaatcaacctttcacagcagcagaacaacatttcactggaaataaatttgatccacaaaaaggaatgcgggtatggtggaaggacgcaaaaactaacaaatgggaattaggcacngtcgtnaacatggggtaggggttttgcttgtgtttccccaggaaaaggacaacaacccgtgtgggttccctcccgancaactgaaattgcaccataactccaaagatgaagcgctcccagaaacaaaaggcgaaganccntcggaaaccaaagagcaagtttcgccgcctgacacataaacttcatacctcgacattgagacaaaatctcgccgtgtgacctacaacaccancattcnaccccaccaacatggggnnntcaaataaaggtcttatcccatcaaacagaaaaattattaaaagaaaaaggaatcccaaaaacgacgggtaatataattctggctgcctttatggtagtcagtgcagcggtaagtataccaccggttggggcaactcaaaattatacctactggcatatgttccttttccccctttattcggtctgtctcctggatggactccccagtagaagtttacactaataatagtgcattcatgccggtccctaatgatgacaggtttccagctcaaccggaagaagaaggtatgcactttaatctgtcaattggctataaatatccaccactgtgcatgggaantncgcctggctgtttagcttattcttaccagaattggatgtggaccgtaccgtcctttacnaatgattcttatcaagtacataatgtgttcagtagcaattcttttcaacttctgactgttaaacttaatccacatgaggaatggagagttcctgtcacaccaaagcataataaaacaaaaggactgccagactgcccaaagaaacctacaaagggacctagtgattcaanncgttttatggaatgattgtaatgctcccaaggccgttgtgctccaaagtctagccacgggtattgttattgattgggctccaaaagggcattattggcgagattgctccggcnaaaataccncatgctcggagtttaattatttgttagattatgtagaggacggatggcagtcctacaggttgagacaatgggtgtctccttacccatttaaatggatggacgcaggcatcgttcctcctagaccaaaaatgattcatcccattgttaccccagaacatcctgaattatggaaattagctgcagctatgacaggaataaggatatggaacgctacctatcaactccttcncactaataccaaaacacccacattcaacatcaccttgatgtctgaacgggtgatacccatcaggagctgtgtcaaacccccacatgctgttggttggaaatataattatcattcccgatacacaaactatagaatgtgataactgtaagctgttcacgtgcattgatgctacttttaatcccacaacaagtattctcttggtaagggctagggagggggtatggataccagtttctttacatcgtccatgggagtcttcccctctattcacatagtcaatgaagttcttaaaggatcctcaaaagaacaaagagatttatttttactcttattgcagtcattgcaggnctaattgcggttactgcaacagcggcaaccgctggagttgccatccacaattctgttcaaaccgctcaatatgttgaagcatggcaaaaaaactcctccagactttggaattctcaggctcaaattgatcaaaaattagctaatcaaattaatgatctccgccaaagtgtaatctggctgggagatagagttatgaatttggaacaccgtatgcaattacagtgtgattggaatacttctgattattgcataacgccttatgcttataataaagatcaacatagctgggaaaaggtctcaagacatttaaaagcctgggatgataacttaaccttggatatttcaaaacttaaagagcaaatttttgaggcttcacaggctcatttatccactgttcctggctcagacatttttgaaggaataactaaagaattatctgatcttaatccctttaaatggatcaaacccctcggaggatcattgttgtcactggcattattaatattggtatgcttatgttgtctncttttagtctgcagatgcctccaaggagtccgaagacaagtccgaagtcaacgacaagcaatgatggcgatggcgatcctagttaataaaaaggggggaga
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 27 99.0 Weakly correlated
2 ZFP57 12 87.0 Weakly correlated
3 ZNF766 8 43.0 Weakly correlated
4 ZNF589 7 28.9 Weakly correlated
5 ZNF2 6 99.0 Weakly correlated
6 ZNF705B 6 28.9 Weakly correlated
7 ZNF257 6 0.0 Weakly correlated
8 ZFP37 5 99.0 Weakly correlated
9 ZNF28 5 28.9 Weakly correlated
10 ZNF778 5 74.0 Weakly correlated
11 ZKSCAN8 4 160.0 Weakly correlated
12 ZNF175 4 94.0 Weakly correlated
13 ZNF486 4 8.6 Moderately correlated
14 ZNF331 3 94.0 Weakly correlated
15 ZNF680 3 28.9 Weakly correlated
16 ZNF394 3 99.0 Weakly correlated
17 ZNF723 3 15.2 Moderately correlated
18 ZNF558 3 99.0 Weakly correlated
19 ZNF584 3 99.0 Weakly correlated
20 ZNF587 3 28.9 Weakly correlated
21 ZNF610 3 28.9 Weakly correlated
22 ZNF251 3 94.0 Weakly correlated
23 ZNF18 3 160.0 Weakly correlated
24 ZNF182 3 99.0 Weakly correlated
25 ZNF324 3 99.0 Weakly correlated
26 ZNF141 2 43.0 Weakly correlated
27 ZIM3 2 87.0 Weakly correlated
28 ZNF585B 2 99.0 Weakly correlated
29 ZFP69B 2 99.0 Weakly correlated
30 ZNF793 2 99.0 Weakly correlated
31 ZNF559 2 74.0 Weakly correlated
32 ZNF674 2 99.0 Weakly correlated
33 ZNF534 2 19.6 Highly correlated
34 ZNF479 2 6.4 Moderately correlated
35 ZNF197 2 99.0 Weakly correlated
36 ZNF417 2 28.9 Weakly correlated
37 ZNF317 2 99.0 Weakly correlated
38 ZNF350 2 99.0 Weakly correlated
39 ZNF93 1 8.6 Moderately correlated
40 ZNF682 1 28.9 Weakly correlated
41 ZNF92 1 28.9 Weakly correlated
42 ZNF695 1 28.9 Weakly correlated
43 ZNF84 1 99.0 Weakly correlated
44 ZNF792 1 94.0 Weakly correlated
45 ZNF705D 1 28.9 Weakly correlated
46 ZNF679 1 28.9 Weakly correlated
47 ZNF597 1 94.0 Weakly correlated
48 ZNF585A 1 99.0 Weakly correlated
49 ZNF565 1 99.0 Weakly correlated
50 ZNF557 1 15.2 Moderately correlated
51 ZNF529 1 99.0 Weakly correlated
52 ZNF528 1 43.0 Weakly correlated
53 ZNF425 1 94.0 Weakly correlated
54 ZNF133 1 99.0 Weakly correlated
55 ZNF12 1 99.0 Weakly correlated
56 ZNF101 1 43.0 Weakly correlated
57 ZKSCAN1 1 160.0 Weakly correlated
58 ZFP69 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZFP37 3 99.0 Weakly correlated
2 ZNF587 3 28.9 Weakly correlated
3 ZNF723 3 15.2 Moderately correlated
4 ZNF382 3 99.0 Weakly correlated
5 ZFP57 2 87.0 Weakly correlated
6 ZNF417 2 28.9 Weakly correlated
7 ZNF680 2 28.9 Weakly correlated
8 ZNF766 1 43.0 Weakly correlated
9 ZNF565 1 99.0 Weakly correlated
10 ZNF558 1 99.0 Weakly correlated
11 ZNF674 1 99.0 Weakly correlated
12 ZNF589 1 28.9 Weakly correlated
13 ZNF101 1 43.0 Weakly correlated
14 ZNF778 1 74.0 Weakly correlated
15 ZNF324 1 99.0 Weakly correlated
16 ZNF584 1 99.0 Weakly correlated
17 ZNF331 1 94.0 Weakly correlated
18 ZNF257 1 0.0 Weakly correlated
19 ZNF679 1 28.9 Weakly correlated
20 ZNF251 1 94.0 Weakly correlated
21 ZNF141 1 43.0 Weakly correlated
22 ZNF12 1 99.0 Weakly correlated
23 ZIM3 1 87.0 Weakly correlated
24 ZFP69 1 99.0 Weakly correlated
25 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats