ZRdb KZFP & Repeats
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LTR_HERVK

  • Name
    HERVK
  • Repbase
    HERVK
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000188
Description :

gag (position ~156-2297), protease (~2063-3082), pol (~3037-5785) andenv (~5624-7951).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tctggcgcccaacgtgggggcttttctctagggtgaaggtacgctcgagcgtggtcattgaggacaagtcgacgagagatcccgagtacgtctacggtcagccttgcggtaagcttgtgcgctcggaggaanccagggtaacaatggggcaaactgaaagtaaaantaaaagtaaatatgcctcttatctcagctttattaaaattcttttaaaaagagggggagttagagtntctacagaaaatctaatcangctatttcaaacaatagaacaattctgcccatggtttccagaacagggaactttagatctaaaagattgggaaaaaattggcaaagaactaaaacaagcaagtagggagggtaaaatcatcccacttacagtatggaatgattgggccattattaaagcagctttagaaccgtttcaaacagaagaagatagcgtttcagtttctgatgcccctggaagctgtgtaatagattgtgaagaagaggcaggganagaatcccagaaaggaacggaaagttcacattgcgaatatgtagcagagccggtaatggctcggtcaacgcaaaatgttgactataatcaattacaggaggtgatatatcctgaaacgttaaaattagaaggaaaaggtccagaattagtggggccatcagagtctaaaccacgaggcccaantcctcttccagcgggtcaggtgcccgtaacattacaacctcaaacgcaggttagagaaaataagacccaaccgccggtagcttatcaatactggccgccggccgaacttcagtatcggccgcccccagaaagtcagtatggatatccaggaatgcccccagcgccacagggcagggcgccataccctcagccgcccactaggagacttaatcctacggcaccacctagtggacagggtagtgnattacatgaaattattgataaatcaagaaaggaaggagatactgaggcatggcaattcccggtaacgttagaaccgatgccacctggagaaggagcccaagagggagagcctcccacagttgaggccagatacgagtctttttcgataaaaatgctaaaagatatgaaagagggagtaaaacagtatggacccaactccccttatatgaggacattattagattccattgctcatggacatagactcattccttatgattgggagattctggcnaaatcgtctctctcaccctctcaatttttacaatttaagacttggtggattgatggggtacaagaacaggtccgaagaaatagggctgccaatcctccagttaacatagatgcagatcaactattaggaacaggtcaaaattggagcactattagtcaacaagcantaatgcaaaatgaggccattgagcaagttagagctatctgccttagggcctgggaaaaaatccaagacccaggaagcgcctgcccctcatttaatacagtaagacaaggctcnaaagagccctatcctgattttgtggcaaggctccaagatgctgctcaaaagtcaattgccgatgaaaangcccgtaaggtcatagtggagttgatggcatatgaaaacgccaatcctgagtgtcaatcagccattaagccattaaaaggaaaggttccngcaggatcagatgtaatctcagaatatgtaaaagcctgtgatggaatcggaggagctatgcataaagctatgcttatggctcaagcaataacgggagttgctttaggaggacaagttagaacatttgggggaaaatgttataattgtggtcaaattggtcatctaaaaaagaattgcccagtcttaaataaacagaatataactattcaagcaactacaacaggtagagagccacctgacttatgtccaagatgtaaaaaaggaaaacattgggctagtcaatgtcgttctaaatttgataaaaatgggcaaccattgtcgggaaacgagcaaaggggccagcctcaggccccgcaacaaactggggcattcccgattcagccatttgttcctcagggttttcagggacaacaacccccactgtcccaagtgcttcagggaatnagccagttaccacaatacaacaattgtcccccgccacaagcggcagtgcagcagtagatttatgtactatacaagcggtctctctgcttccaggggagcccccgcaaaaaatccccacaggggtatatggcccgctgcctgaggggactgtaggactaatcttaggaagatcaagtctaaatctaaagggagttcaaattcatactggtgtggttgattcagactataaaggcgaaattcagttggttattagctcttcagttccttggagtgccagtccaggagacaggattgctcaattattactcctgccttatattaaggttggaaatagcgaaataaaaagaacaggagggtttggaagcaccgatccgacaggaaaggctgcatattgggcaagtcaggtctcagagaacagacctgtgtgtaaggccattattcaaggaaaacagtttgaagggttagtagacactggagcagatgtctctatcattgctttaaatcagtggccaaaaaattggcctaaacaaaaggctgttacaggacttgtcggcgtaggcacagcctcagaagtgtatcaaagtaccgagattttacattgtttagggccagataatcaagaaagtactgttcagccaatgattacttcnattcctcttaatctgtggggtcgagatttattacaacaatggggtgcggaaatcaccatgcccgctccattatacagccccacgagtcaaaaaatcatgaccaagatgggatatataccaggaaagggactagggaaaaatgaagatggcattaaagttccaattgaggctaaaanaaatcaagaaagagaaggaatagggtatcctttttaggggcggccactgtagagcctccnaaacccatnccattaacttggaaaacagaaaaaccngtatgggtaaatcagtggccgctaccaaaacaaaagctggaggctttacatttattagcaaangaacagttagaaaagggacatattgagccttcgttctcgccttggaattctcctgtgtttgtaattcagaaaaaatcaggcagatggcgcatgttaactgacttaagggccgtnaacgccgtaattcaacccatggggcctctccaacccgggttgccctctccggccatgatcccnaaagattggcctttaattataattgatctgaaggattgcttttttaccattcctctggcagagcaggattntgaaaaatttgcctttactataccagccataaataataaagaaccagccaccaggtttcagtggaaagtgttgcctcagggaatgcttaatagtccaactatttgtcagacttttgtagctcgagctcttcaaccagttagagacaagttttcagactgttatatcattcattatgttgatgatattttgtgtgctgcagaaacgagagacaaattaattgactgttacacatttctgcaagcagaggttgccaacgcaggactggcaatagcatctgataagattcaaacctctactccttttcattatttagggatgcaggtagaggatagaaaaattaagccacaaaaaatagaaataagaaaagacacattaaaaacattaaatgactttcaaaaattgctaggagatattaattggattcggccaactctaggcattcctacttatgccatgtcaaatttgttctctatcttaagaggggacccagacttaaatagtaaaagaacgttaaccccagaggcaacnaaagaaattaaattagtngaagaaaaaattcagtcagcgcaagtaaatagaatagatcccttagccccactccaacttttgatttttgctactgcacattctccaacaggcatcattgttcaaaatacngatcttgtggagtggtcattccttcctcacagtacagttaagacttttacattgtacttggatcaaatggctacattaattggtcaggcaagattacgaataataaaattgtgtggaaatgacccagacaaaatcgttgttcctttaaacaaggaacaggttagacaagcctttatcaattctggtgcatggcagattggtcttgctgattttgtgggaattattgataatcattacccaaaaacaaaaatcttccagtttttaaaattgactacttggattttacctaaaattaccagacgtgaacctttagaaaatgctctgacggtgtttactgatggttccagcaatggaaaagcggcttacacngggccgaaagaacgagtcatcgaaactcaatatcantcggctcaaagagcagagttggttgcngtcattacagtgttacaagattttgatcagcctatcaacattgtatcagattctgcatatgtagtacaggctacaagggatgttgagacagccctaatcaaatatagcatggatgatcagttaaaccagctgttcaatttgttacaacaaactgtaagaaaaagaaatttcccattttatattactcatattcgagcacacactaatttaccagggcctttaactaaagcaaatgaacaagctgacttgctggtatcatctgcattcataaaagcacaagaacttcatgctttgactcatgtaaatgcagcaggattaaaaaacaaatttgatgtcacatggaaacaggcaaaaaatattgtacaacattgcacccagtgtcaagtcctacacctgcccactcaagaggcaggagttaatcccagaggtctgtgtcctaatgcgttatggcaaatggatgtcacgcatgtaccttcatttggaagattgtcatntgtccatgtaacagttgatacttattcacatttcatatgggcaacctgccagacaggagaaagtacttcccatgttaaaaaacatttattatcttgttttgctgtcatgggagttccagaaaaaattaaaactgacaatgggccaggatactgtagtaaagcnttccaaaaattcttaaatcagtggaaaattacacatacaacaggaattccttataattcccaaggacaggccatagttgaaagaactaatagaacactcaaagctcaattggttaaacaaaaagaagggggagacagtaaggagtgtancactccccagatgcaacttaatctagcactctatactttaaattttttaaacatttatagaaatcagaccactacttctgcagaacaacatcttactggtaaaaagaacagcccacatgaaggaaaactgatttggtggaaagacaacaaaaataagacatgggaaatagggaaggtgataacgtgggggagaggttttgcttgtgtttcaccaggagaaaatcagcttcctgtttggatacccactagacatttgaagttctacaatgaacccatcggagatgcaaagaaaagcgcctccgcggagacggaaacaccgcaatcgagcatcatcgactcgcagggtgaacaaaatggtgatatcagaagaacagatgaagttgccatccaccaagaaagcggagccgccgacctgggcccaactaaagaagctgacacagttagctgaaaaaagcctggagaacacaagggtgacacaaactccagagaatatgctgcttgcagctttgatgattgtatcaacggtggtaagtctccctatgcctgcaggagcagctgcagctaactatacttactgggcctatgtgcctttcccgcccttaattcgggcagtcacatggatggataatcctattgaagtatatgttaatgatagtgcatgggtacctggccccacagatgatcgctgccctgccaaacctgaggaagaagggatgatgataaatatttccattgggtatcgttatcctcctatttgcctagggagagcaccaggatgtttaatgcctgcagtccaaaattggttggtagaagtacctactgtcagtnccaccagtagattcacttatcacatggtaagcgggatgtcactcgggccacgggtaaattatttacaggacttttcttatcaaagatcattaaaatttaggcctaaagggaaaccttgccccaaggaaattcccaaagaatcaaaagacacagaagttttagtttgggaagaatgtgtggccgatagtgcggtgatattacaaaacaatgaattcggaactattatagattgggcacctcgaggtcaattctaccacgattgcacgggacaaactcagtcgtgtccaagtgcacaagtgagtccggccgttgatagcgacttaacagaaagtctagacaaacataagcataaaaaattacagtctctctacccttgggaatggggagaaaaaggaatctctaccccaagaccaaaaatagtaagtcctgtttctggtcctgaacatccagaattatggaggcttactgtggcctcgcaccacattagaatttggtctggaaatcaagctntagaaacaagagatcgtaagccatnttatactatcgacctaaattccagtctaacagttcctttgcaaagttgcgtaaagcccccttatatgctagttgtaggaaatatagttattaaaccagactcccaaactataacctgtgaaaattgtagattgtttacttgcattgattcaacttttaattggcagcaccgtattctgctggtgagagcaagagagggcgtgtggatccctgtgtccatggaccgaccgtgggaggcctcgccatccgtccatattttgactgaagtattaaaaggcgttctaaatagatccaaaagattcatttttactttaattgcagtgattatgggattaattgcagtcacagctacggctgctgtngcaggagttgcnttgcactcttctgttcagncngtaaactttgttaatgattggcaaaagaattctacaagattgtggaattcacaatctagtattgatcaaaaattggcaaatcaaattaatgatcttagacaaactgtcatttggatgggagacaggctcatgagcttagaacatcgtttccagttacagtgtgactggaatacgtcagatttttgtattacaccccgagcttataatgagtctgagcatcactgggacatggttagacgccatctacagggaagagaagataatctcactttagacatttccaaattaaaagaacaaattttcgaagcatcaaaagcccatttaaatttggtgccaggaactgaggcaatcgcaggagttgctgatggcctcgcaaatcttaaccctgtcacttgggttaagaccatcggaagtnccactattgtaaatttcgtattaatccttgtgtgcctgttctgtctgttgttagtctacaggtgtatccagcagctccggagagacagcgaccagcgagaacgggccatgatgacgatggcggttttgtcaaaaagaaaagggggaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 87 99.0 Weakly correlated
2 ZNF394 59 99.0 Weakly correlated
3 ZNF2 57 99.0 Weakly correlated
4 ZNF723 50 15.2 Moderately correlated
5 ZFP37 47 99.0 Weakly correlated
6 ZNF766 42 43.0 Weakly correlated
7 ZNF587 25 28.9 Highly correlated
8 ZKSCAN1 23 160.0 Weakly correlated
9 ZNF263 22 180.0 Weakly correlated
10 ZNF324 21 99.0 Weakly correlated
11 ZNF101 20 43.0 Weakly correlated
12 ZNF417 19 28.9 Highly correlated
13 ZNF18 19 160.0 Weakly correlated
14 ZNF558 18 99.0 Weakly correlated
15 ZNF317 17 99.0 Weakly correlated
16 ZNF589 17 28.9 Highly correlated
17 ZNF175 16 94.0 Weakly correlated
18 ZNF519 14 19.6 Moderately correlated
19 ZNF197 14 99.0 Weakly correlated
20 ZKSCAN8 14 160.0 Weakly correlated
21 ZFP69B 13 99.0 Weakly correlated
22 ZNF251 13 94.0 Weakly correlated
23 ZNF92 12 28.9 Highly correlated
24 ZNF584 11 99.0 Weakly correlated
25 ZNF610 11 28.9 Highly correlated
26 ZNF28 9 28.9 Highly correlated
27 ZNF140 9 99.0 Weakly correlated
28 ZNF641 8 99.0 Weakly correlated
29 ZNF479 7 6.4 Weakly correlated
30 ZNF695 7 28.9 Highly correlated
31 ZNF17 6 69.0 Weakly correlated
32 ZNF528 6 43.0 Weakly correlated
33 ZNF701 6 28.9 Highly correlated
34 ZNF202 6 160.0 Weakly correlated
35 ZNF534 5 19.6 Moderately correlated
36 ZNF554 5 99.0 Weakly correlated
37 ZNF680 5 28.9 Highly correlated
38 ZNF274 4 99.0 Weakly correlated
39 ZIM3 4 87.0 Weakly correlated
40 ZNF425 4 94.0 Weakly correlated
41 ZNF93 3 8.6 Weakly correlated
42 ZNF816 3 28.9 Highly correlated
43 ZNF585A 3 99.0 Weakly correlated
44 ZNF707 3 74.0 Weakly correlated
45 ZNF705B 3 28.9 Highly correlated
46 ZNF679 3 28.9 Highly correlated
47 ZNF506 3 28.9 Highly correlated
48 ZNF100 3 28.9 Highly correlated
49 ZNF182 3 99.0 Weakly correlated
50 ZNF189 3 99.0 Weakly correlated
51 ZNF248 3 99.0 Weakly correlated
52 ZNF284 3 43.0 Weakly correlated
53 ZNF490 2 43.0 Weakly correlated
54 ZFP57 2 87.0 Weakly correlated
55 ZFP69 2 99.0 Weakly correlated
56 ZNF808 2 19.6 Moderately correlated
57 ZNF141 2 43.0 Weakly correlated
58 ZNF682 2 28.9 Highly correlated
59 ZNF671 2 94.0 Weakly correlated
60 ZNF613 2 99.0 Weakly correlated
61 ZNF597 2 94.0 Weakly correlated
62 ZNF354A 2 99.0 Weakly correlated
63 ZNF544 2 0.0 Weakly correlated
64 ZNF547 2 74.0 Weakly correlated
65 ZNF700 1 28.9 Highly correlated
66 ZFP14 1 99.0 Weakly correlated
67 ZNF486 1 8.6 Weakly correlated
68 ZNF823 1 43.0 Weakly correlated
69 ZNF543 1 99.0 Weakly correlated
70 ZNF792 1 94.0 Weakly correlated
71 ZNF778 1 74.0 Weakly correlated
72 ZNF75D 1 94.0 Weakly correlated
73 ZNF133 1 99.0 Weakly correlated
74 ZNF135 1 94.0 Weakly correlated
75 ZNF468 1 28.9 Highly correlated
76 ZNF555 1 94.0 Weakly correlated
77 ZNF287 1 99.0 Weakly correlated
78 ZNF557 1 15.2 Moderately correlated
79 ZNF44 1 43.0 Weakly correlated
80 ZNF230 1 28.9 Highly correlated
81 ZNF560 1 43.0 Weakly correlated
82 ZNF674 1 99.0 Weakly correlated
83 ZNF565 1 99.0 Weakly correlated
84 ZNF257 1 0.0 Weakly correlated
85 ZNF440 1 28.9 Highly correlated
86 ZNF611 1 19.6 Moderately correlated
87 ZNF264 1 99.0 Weakly correlated
88 ZNF605 1 99.0 Weakly correlated
89 ZNF585B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 47 15.2 Moderately correlated
2 ZNF587 23 28.9 Highly correlated
3 ZNF2 17 99.0 Weakly correlated
4 ZNF417 17 28.9 Highly correlated
5 ZNF382 7 99.0 Weakly correlated
6 ZNF519 5 19.6 Moderately correlated
7 ZKSCAN1 4 160.0 Weakly correlated
8 ZNF101 4 43.0 Weakly correlated
9 ZNF251 4 94.0 Weakly correlated
10 ZNF17 4 69.0 Weakly correlated
11 ZIM3 3 87.0 Weakly correlated
12 ZNF558 2 99.0 Weakly correlated
13 ZNF671 2 94.0 Weakly correlated
14 ZNF707 2 74.0 Weakly correlated
15 ZNF816 2 28.9 Highly correlated
16 ZNF641 2 99.0 Weakly correlated
17 ZFP37 2 99.0 Weakly correlated
18 ZNF680 2 28.9 Highly correlated
19 ZNF610 2 28.9 Highly correlated
20 ZNF695 2 28.9 Highly correlated
21 ZNF766 2 43.0 Weakly correlated
22 ZFP69 2 99.0 Weakly correlated
23 ZNF506 2 28.9 Highly correlated
24 ZNF189 2 99.0 Weakly correlated
25 ZNF479 2 6.4 Weakly correlated
26 ZNF589 1 28.9 Highly correlated
27 ZFP14 1 99.0 Weakly correlated
28 ZFP57 1 87.0 Weakly correlated
29 ZNF141 1 43.0 Weakly correlated
30 ZNF274 1 99.0 Weakly correlated
31 ZNF674 1 99.0 Weakly correlated
32 ZNF317 1 99.0 Weakly correlated
33 ZNF528 1 43.0 Weakly correlated
34 ZNF440 1 28.9 Highly correlated
35 ZNF792 1 94.0 Weakly correlated
36 ZNF585A 1 99.0 Weakly correlated
37 ZNF597 1 94.0 Weakly correlated
38 ZNF554 1 99.0 Weakly correlated
39 ZNF75D 1 94.0 Weakly correlated
40 ZNF823 1 43.0 Weakly correlated
41 ZNF140 1 99.0 Weakly correlated
42 ZNF287 1 99.0 Weakly correlated
43 ZNF263 1 180.0 Weakly correlated
44 ZNF324 1 99.0 Weakly correlated
45 ZNF534 1 19.6 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF2 99.0 Weakly correlated
2 ZNF417 28.9 Highly correlated
3 ZNF587 28.9 Highly correlated
4 ZNF723 15.2 Moderately correlated