ZRdb KZFP & Repeats
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LTR_HERVIP10B3

  • Name
    HERVIP10B3
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0001310
Description :

Three full ORFs: gag: 571-2169, pol:2170-5592, env:5574-6860.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
atttgggggctcgtccgggatcccattctcctccgggaggggccnncgatcacctctcgtgaggagacgcgtcccgctgcctcgttgcggtggcctcaggggtgagggatcgagacccacccggcgtgacgaataaacccggactctcagcaacgcgggnagnagggaggatccttaagaacnccgcggcgaccaggtaactctgtgcacagaccaaggtaagaaaagccgcgacgggggcggcgaagtattccttggtggtcgggatntctggaggttgaaagtgtgtgagtgagacgcacnattgggtgcgaagcgagtgcggagtccggacttggttccgtggtcacctcatacggcttagggcggntttccngtcgggggnttataccgacccgccaatgctaagagggacctaaaattcccgcgagggaagcggccaanaaggacgaagcgaangctnanaagagtgcaagaaacctccagtgggaaaaggggaggttgagcctctagganangggagtgcaagaaatctctagtangagagattgagcctcaccaacctccaggatgggaaataccccaagtaagacagggaatanaaaaggncaagcagacaataaaattccccctgatagtcccctaggcctcatgttaaaatattggaaggataatgaaaggaccaaacacaagaaaaagcagcaaatgataaaatattgctgttttatttggactaaggaacccatcctcaaaccctcagttttctggccaaagtttgggtcaaatgaggattggatttgtcaacttttaatagagtatgtcaatgacaaaagtcctgtctcccaggaggaaatagactatgccctgtgttggnggcaggggcctgtcctcctctatcccctaaaggacgaaaaagcaaagccaaactcaannccccccaaagacgacctagccaagtcanatcccacacctaaagacgcatgggaccctctagaccaccttcccccgcctacccctctgccccaagctgaacactcagtccctcccccatataaccctgccccatgggccttgccaccccacacccccgctggacagccacccgaacatgcccctccctcaggaaggcttcaacgtgagatagaacaatgtaaaaaggatattcaaaacttccctttcccctctncctcgaaggagtctgccccaaccctctttcccttaagggaagtgccnctaggaggagggggcattggcttcgtaaatgcccccttaaccagctcagaggtccgaaacctaaaaagggaactcaaaccactnttagatgacccttatggagtngcagatcaaattgaccaatttctaggaccacagttgtatacttgggctgagttaatgtccatcctaggcatcctcttctcgggagaggaaagaagcatgatccgcagggccgctatgatagtctgggaacgtgaacaccctcccggtcaaaacgtccctgcagcggancaaaaattcccggcccaagaccctcagtgggataacaacaatgcagcccaccgagaaaatatgaaagaccttagggaaatgataattaaagggattcgggaatcagtgccccgaacccaaaatattacccgagcatttaatatacaacaagggaaagatgaagggcctatggaattcttagacagactnaaggagcaaatgagaaaatatgcnggcctaganntagaagacccccttgggcaagggatgttaaagctccattttgtcaccaatagttggccagatattacaaagaaattacaaaagatagagaactggaaagaccgncccatagaggaacttctaagagaggcccaaaaagtatatgtaaggagggatgaggaaaagcaaaagcaaaaggcaaaaattatgctgtccaccctacaacagggnactcttcaacagggggcccagggaantagaacctgtaaanntcctaagcncccggctgccaggccntatanaggangcaaagggatgaaacccgagagccagggaacagggaggggaagagggnaaaacaaatgtttcaaatgtggaaaantaggtcacttcaaaagagaatgtcccgaatgggaaaaagaaaaagaagtcatcccacttacggcctttgaggaagaataggggggtcaggggctctgtctcttttatctcgagtcccaccaagagcccttgataaatttagaggtgggacccaaatctgagcttatnacctttttaatcgactcaggagcagctcgctcctctgtttgttatctcccatctggtgtaacttgttcacaagaagaacttnttatctcaggggtaaaaggagaaggatttaaagcaaaaatcttagaggaaacagaagtcanatataaaaaccgatcagctaatattaaatttctgttaattccggaggcaggaacaaacctattaggaagagatttaatgctaaaattaggcttaggcctccanattaatcanggaaaattcctcncctccctaaacttgctcaccaccgcagacgaagaacacattcatcccgacgtatggtcaaaagaagggaatcgaggaaagttacggattcctccgattcatgtcaaattaaaaacccctggggaagtagtaaagagaaagcaataccctattcctttagaagccaggataggtttaaaacctataattgaaggccttntccgtgatgggctccttgaaccctgtatgtccccctataacactccaatactgcctgtaaagaagccagacgggtcataccggctagtgcaagacctcngggctattaatcagatagtccaaactacccaccctgttgttcccaatccttacaccattatcagtagaatcccatacgaccaccaatggttcacggtaatagatttaaaagatgccttctgggcttgcccnttagcagaggacagccgggacntatttgcctttgagtgggaagaccctcactccggtcgaaaacaacagtaccgatggacagtcttaccccaagggtttacagagtccccaaatctatttggtcaaatnttagaacaagtcctagaaaanttntccctgccnncatgcatatgcctgctccagtacgtggatgacctgctnatntcnggagacgacagagannaagtancngcnttctcaatcnacntcctnaattttctaagggaagaggggctacgggtctcaaagagnaagctccaattcgtagagcctgaagtnaaatacctaggacacttaatnagcaaaggcaaacgaaggatagggcccgaacgggttgaaggnatcgtatccttacctctgcctgagacnaaacaagaacttagaaaattcttagggttagtcggatattgccgcctatggattgactcntatgccctagaaacaaagcctctataccaaaaactcacccaagaagagccngaccccctcctntggacctcancagaaatccaacaggtngaagagttaaaacatctgctngtaactgcccctgttctagctttgccctccctagaacagccattccacctttttgtcaacgtaaacaagggggtagccttaggggtacttacccaagaacacggaggccaccggcaacccgtagccttcctatcaaaaattctngacccagtaacccgtggatggcccgaatgtgttcaatccgtagcggcaaccgccttgctaacagaagaaagcagaaaantaacctttgggggaaacctcgtcgtaagcacgcctcatcaggtcagaactatcctnaatcagaaggcaggaaggtggcttactgactcaagaattttaaagtatgaagctatcctgttagaaagagatgatttaacactaaccactgataattcacttaacccngctgctttcctaacaggaaatccaaacccagaagaacctgagcataaatgtttagatctaatcggttatcanacnaaagttagaccngatttaagcgagacccctttccaaacggggcgncacctctttatagatggctcttcccgggtaattgaaggaaaaaggcataacgggtactcngtagtngatgggganaccctcgcagaagtagagtcaggaagactgccaaataactggtccgcccaaacatgtgaactgtttgcattaaatcaagccttaaaatncctgcaaaaccaggaagggactatttatactgactccaagtatgccttcggagtagtccacacctttggaaaaatttggactgaacgaggcctcattaatagtaaaggccaagacctggtccacaaagaattaatnatncaagtattaganaacctncagctgccagaagaaatagcngttgtccatgtcccaggacaccaaaagaacccntcttttgaaagccggggaaataacctngcngatcaaatagccaagcaagctgcctcttcccaagaggcgcccgttttccacctaaccccttgtcttccccctccagctgcaatccccatcttctcccncgcagaccaagaaaaactaaaaaaaataggagctaaggaaaacccagagggaaagtgggtattaccagaccgaagggaaatgttgtccaaacccctcatgagggaaatactgtcncagctncatcaaggaactcactggggncctcaagctatgtgtgatgcagtcctcagagtctatgggtgtataggaatntataccctngcnaggcaagttgcggatagttgcntagtgtgcagaaaaactaataagcaaaccctaaagaagcnacctcccgggggaagaaacccagggttaaggccgttccaaagtgtccaagttgactacaccgaaatgcccccaataggccgcctnaagtatttactagtaatagtagaccacctcacccactgggtagaagccatccccttcccaagcgcaacngccagtaatgtagtcaaagcactgttggaanatatcatacccaggtttggactaatagaaaacattgattcagacaatgggacccacttcactgcacacgtcattaaggggctagcccaagcactaganataaaatgggaataccataccccctggcacccaccctcatcagggagagtagaaagaatgaatcagactctaaaaaaccacctaaccaaattaatcttagaaacccggttaccatggacnaaatgccttcccattgccttgctaagaatccgaactgcccctcggaaagatgtcggcctatccccttatgaaatgctntatgggttgccttatctanactccactactgacnttcctacgtttgaaacaaaagatcagtttctcaaaaactatatacttggtctgtcttccaccttctcctccctcaggactnaaggcctcctagcacagacnccacccctcgaattcccagtncaccaacaccagcccggagatcacgtcctcatcaaaagttggaaagagggaaagctcgaacccgcctgggaaggaccttacctagtgctcctaacnactgagacngcagtccgaacngccgaaaaaggatggacccatcacacccgagtcaaaaaggcgccaccccctccagagtcatggaccgtcgttccagggccaacncccnccaaactaangctaaaaagagtttaatctgtctttttcttcttcccttagctaccgnnggncatctcgttattaatgtaaccaggtcaanctcnccccaaactattacntttgatgcttgtcttgtcataccctgtggggatctccaaagccaaaggcagctagcctcttcagaaaagtatctctgcccctccaggacaaaccgcaccgcctacaaaaccgactcttgtaatnaacgggcacgaaccnggcgttggnggttctgctatagctgggaagatgttntctggaccaccgagtatcagggctggacctcctcagagggttgcaccgccctaaaaccctacntccactttaccaaaggaaccaccccccctaattgccaacntnaccaatgtaacccagtgcnnatctccattactatccccacctccaccgaccctaaccccactttaggncgcttctatggcntaggagcagatgtcgctggganggaccctataggntcctttgaaatgcgcttcgttnctcctcctccacctcctaccnttnccccctccccaaacccncnaaatcaaaccgtttctcgcttcatacccaatgacaaaaccaaagtagccgttgtagaagtnaaagatttaaaacaaaccctagcnattgaaacagggtaccaagatgcaaatgcctggctggaatggattaaatattccgttcgcacnctaaacaaaagcgactgttacgcttgtgcgacgggcaggccagaggcccagattgtcccctttccactcggatggtccgaccaaccgggcatgggctgcatggtagctctcttccaagaccccacagcctggggcaacgagtcatgcgnnactctctcnctgctnttcccggaagtcaaaagccctgcgggtcagcccccgagggccatccggcctccanctcccgacgccaattttacctcgtgtctctcacgacaaggggaaaanttggcattccttggagacctaacgggatgcagtgagnctaagcctttccaagagcttaccaatcagtctgcccttgttcatccccgagcggatgtatggtggtattgtggtggaccnctactgggcactctgccaagtaactggagcggcacttgcgctctagtccaattggccatccctttcaccctggcatttcatcaaccaganagaaagnagacaacccgaagaaaaagagaagcccctcacgggtcctttgaccctcacgtttatatagacgccatcggagtcccacgaggggtaccagatgaatttaaagcccgaaatcaaatagctgcaggatttgaatctgtnttgttctggtggtcaactataaacaaaaatgtagactggataaattacatntactataaccaacagcggtttgtcaattacaccagagatgccattaaaggaatagctgaacaattaggncccaccagccaaatggcctgggaaaacagaatagccctngacatgatattagcngaaaaaggcggagtctgtgtcatgattggagtccaatgttgtacttttatccctaacaacacagcccccgatggaacaatnacaaaagccttacaaggccttaccnccctatcaaatgaattagccgaaaattctggaataaatgaccccttcacaggtctnatggaaaagtggtttggnaaatggaaaggactcatgncctcaatntttacctcccttgcaatcgttataggtgtactcattcttgtnggntgctgtatcataccctgtattcgtgggttagtgcaaaggcttatagaaacagctctcaccaaaacctcccctanctctcccccnccctattcagataagctcttnctcctagangaccaagnagaacaacaaagccaagacatgttaaaaaagtttgaagaggaagaactataaaacaaaaggggggaaat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 25 43.0 Weakly correlated
2 ZNF506 25 28.9 Highly correlated
3 ZNF382 21 99.0 Weakly correlated
4 ZNF726 19 28.9 Highly correlated
5 ZNF723 18 15.2 Moderately correlated
6 ZNF547 16 74.0 Weakly correlated
7 ZNF562 15 28.9 Highly correlated
8 ZNF680 13 28.9 Highly correlated
9 ZNF479 12 6.4 Weakly correlated
10 ZNF251 11 94.0 Weakly correlated
11 ZNF445 9 99.0 Weakly correlated
12 ZNF394 6 99.0 Weakly correlated
13 ZFP57 6 87.0 Weakly correlated
14 ZNF671 5 94.0 Weakly correlated
15 ZNF18 5 160.0 Weakly correlated
16 ZKSCAN1 5 160.0 Weakly correlated
17 ZNF257 5 0.0 Weakly correlated
18 ZNF534 4 19.6 Moderately correlated
19 ZNF705B 4 28.9 Highly correlated
20 ZNF28 4 28.9 Highly correlated
21 ZNF101 4 43.0 Weakly correlated
22 ZNF133 4 99.0 Weakly correlated
23 ZNF793 3 99.0 Weakly correlated
24 ZNF273 3 28.9 Highly correlated
25 ZNF674 3 99.0 Weakly correlated
26 ZNF561 3 43.0 Weakly correlated
27 ZIM3 3 87.0 Weakly correlated
28 ZNF263 3 180.0 Weakly correlated
29 ZNF679 3 28.9 Highly correlated
30 ZNF705D 3 28.9 Highly correlated
31 ZFP37 3 99.0 Weakly correlated
32 ZNF597 2 94.0 Weakly correlated
33 ZNF2 2 99.0 Weakly correlated
34 ZNF682 2 28.9 Highly correlated
35 ZKSCAN5 2 160.0 Weakly correlated
36 ZNF75D 2 94.0 Weakly correlated
37 ZFP69B 2 99.0 Weakly correlated
38 ZNF816 2 28.9 Highly correlated
39 ZNF274 2 99.0 Weakly correlated
40 ZNF485 2 94.0 Weakly correlated
41 ZNF558 2 99.0 Weakly correlated
42 ZNF554 2 99.0 Weakly correlated
43 ZNF175 2 94.0 Weakly correlated
44 ZNF528 2 43.0 Weakly correlated
45 ZNF222 2 43.0 Weakly correlated
46 ZNF700 1 28.9 Highly correlated
47 ZNF317 1 99.0 Weakly correlated
48 ZNF799 1 43.0 Weakly correlated
49 ZNF786 1 99.0 Weakly correlated
50 ZNF425 1 94.0 Weakly correlated
51 ZNF264 1 99.0 Weakly correlated
52 ZNF468 1 28.9 Highly correlated
53 ZNF716 1 19.6 Moderately correlated
54 ZNF573 1 94.0 Weakly correlated
55 ZNF677 1 99.0 Weakly correlated
56 ZNF157 1 99.0 Weakly correlated
57 ZNF141 1 43.0 Weakly correlated
58 ZNF610 1 28.9 Highly correlated
59 ZNF563 1 28.9 Highly correlated
60 ZNF589 1 28.9 Highly correlated
61 ZNF585A 1 99.0 Weakly correlated
62 ZNF584 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 16 15.2 Moderately correlated
2 ZNF506 16 28.9 Highly correlated
3 ZNF766 9 43.0 Weakly correlated
4 ZNF479 6 6.4 Weakly correlated
5 ZNF534 4 19.6 Moderately correlated
6 ZNF382 3 99.0 Weakly correlated
7 ZNF101 3 43.0 Weakly correlated
8 ZNF674 3 99.0 Weakly correlated
9 ZNF680 3 28.9 Highly correlated
10 ZNF257 2 0.0 Weakly correlated
11 ZNF133 2 99.0 Weakly correlated
12 ZNF28 2 28.9 Highly correlated
13 ZNF705D 2 28.9 Highly correlated
14 ZNF816 2 28.9 Highly correlated
15 ZIM3 2 87.0 Weakly correlated
16 ZNF317 1 99.0 Weakly correlated
17 ZNF716 1 19.6 Moderately correlated
18 ZFP69B 1 99.0 Weakly correlated
19 ZNF671 1 94.0 Weakly correlated
20 ZNF273 1 28.9 Highly correlated
21 ZNF677 1 99.0 Weakly correlated
22 ZNF485 1 94.0 Weakly correlated
23 ZNF705B 1 28.9 Highly correlated
24 ZNF597 1 94.0 Weakly correlated
25 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF506 28.9 Highly correlated
2 ZNF723 15.2 Moderately correlated