ZRdb KZFP & Repeats
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LTR_HERVI

  • Name
    HERVI
  • Repbase
    HERVI
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000185
Description :

HERVI is flanked by LTR10B long terminal repeats. Although none of theHERVI elements have retained long open reading frames, stretches withhomology to various parts of the Moloney murine leukemia virus (Mo-MuLV)proteins were detected .
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aatttgggggcccatccggggntcccattctcctccggggaagggttctccggtcntcctctcgtgaggagancgcgtcccgctgncctcgttgcggtggcctcaggggtaggaatcgagacccacccgtgtgacgaataaacccggactctcagcaacgcggggagaaanaggcctgcaataccgcggcgaccaggtaactctgtgcacagaccaaggtaggaaangccgcgggggcgacaaagtacttccttggtggtcgggatattctggaggttgaaagtgcgtgaatggtnacaagcgctactgctgtgcggagtgagtgagtccnatctgcggttccgtggtcacctcatacggcttagccnnctntggnggatcctgncgtcggggtttataccgncntgccaatgctaagagggacctaaaatattcccgngagggaagcggccagagcggacgaagcgaaaggagaagagtgcgaggaacctccagcaggtggggctaaaggataggcaagaaatctctagtacgagggattgagccncagnaagctccagacggataggcaagaaatccctagtacgaggggttgagccncagcaagcccccagtaggcaagaaatctctagtacgagggattgagcctagccaggacccaanatgggaaataccccaagnaagacagggagcaaaaaggataaagatagtaacaaagatatnccccctgatagtcccctaggtctcatgttaaaatattggaaggataatgaaaggactaaacataagaaaaagcancaaatgataaaatattgctgtttcatttggacccaaggacccatcctcaaaccctcaatcttctggccaaagtttgggtcgaatgaggatgtaatgtgtcaacttctaattcaatatgttaatgataaaagtccggtttctcaagaagaactagactatgctctttgttggaggcagggacctgtcctcctttntcccttaaagacaactagggaagaacccgatccagcatctcaaantgaaaagtcagacgagccgactcccacgcctaaagccagcacatgggatcccctagaccatcttcccccgctcagtgccccaatcctgacccccctncccctcgggcagctgctgccgccccagatcccgccccagatccttcccctgctcacgttgttcctcctccttacaaccctgactcttgggagtnatcgtcccatgagcctgtcccctgccagcctaagtacccctccctaaaaggactccagcgtgaggtagagcaatgtaaaaaggatattcagaacttcccttttccctccacacctaaggagtcagccccgactctcttccccttaaaagaggtgccacaaggagggggagccattggctttgtgaatgctcccttgaccagttcagaagtccgaagtttgaaaaaggaacttaagccactgttagacgacccttatggggtggcagatcaggttgatcaattcttagggacctcagttatacacttgggtcgagttaatgtccatcctaggctcctcttttcgggggaggaaagaangcatgatccgtagggctgctatggcagtttgggaacgtgaacaccctcccggtcaaaacgttcctaccgcggaccaaaaattccctgcccaagcgngacccccggtgggacaataataacgcagctcaccgagaaaacatgcaagacctaagggaaatgataataaaaggaattagggaatcagtaccccgaactcaaaatctctctaaagcatttgatatacaacaggagaaagatgaggggcctatgaaattcttagacagactaaaggagcaaatgagacaatatgcaggcctaaatttggaagatcccctnggacagggaatgttaaagctccattttgtcactaaaagttggccagacgtttcaaaaaagttacaaaagntagaagattgggaagaccgncccctaagtgaacttctcagagaagctcaaaaagtatatgtgaggagagacgaggaaaagcaaaaacaaaaggcaaaacttatgttatccaccttccaacaggtggctccaaacccatatacttctaaacaaagcttccagggggccagaaactataaagggtcccaancctcccgnncccggtttagaggacccaagcctccanctagaggaccnaggccctcgtttaccaggccctctaaagagcataggggagcaaggccaaagaatcccagaactgagagggaggaaggacaagatagatgttncaaatgtggaagaacaggccacttcaagagggaatgtcccgaattggaaaaagagagagaagccctcccactcatgacttttgaggaagaataggggggtcaggggctctgtctcttttatctcgagtcccaccaggagcccttgataaatttagaggtgggacccaaacatgaacttatcacctttttagtngattcaggagcggcncgctcctctgtttgtttccctccacctgatatcgcctgctcctcagaagaacttttngtctcnggggtaaaaggagaaggatttaaggcaaaaatcttagaaaacacagaagtcagatatcaagatcgatcgactcatattcaatttttgttaatccctgaagcaggaactaatctattaggaagggacttaatgttaaagctaggcataggcctacaagtcggcccaaaaggattcctcacctcattaaacctactcaccgccgcggatgaaaaatacattcatcctgatgtctggtcaagggaaggaaaccgagggaaactccgagtccctccaatacacatcaagctaaaaaccccgnanngggaagtagtaaggaggaagcaataccccattcccctagagggcaggatagggctgaagcctgtaattgaaagtctcattaaagatgggcttcttgaaccctgtatgtccccttataacaccccaatactgcctgtcaagaaatcagacgggtcataccgactggtgcaagacctcagagctatcaaccaaatagtccagaccacccaccccgttgtccctaacccttacaccattctcagcaaaattccatatgatcatcaatggtttacagtaatagatttaaaggatgccttttgggcatgcccctggctgaggacagccgagacatatttgctttcgagtgggaagatccccattcngggcggaaacaacagtatcgatggacagtcttgccccaagggttcacagactcccctaacctctttggtcaaattctagaacaagtnctagaaaaagttnctaccccaaaacaaatatgcctgctccagtacgtggatgatnttctcatatctggtgaagatatagagaaagtagctgncttctctacacatattcttaaccatctgcagtgcgaggggttacgggtctcaaagggaaagcttcagtntgtagaacctgaagttaaatatttaggccacttaataagtgcaggcaagcgaaggatagggcccgaacgagtcgaaggaatcgtgtccttacccttgcctcaaactaaacaagaactcaggaaatttttaggattagttggatattgccgcttatggattgactcatatgcnctaaanagtaaacttctataccaaaaacttgcccaggggaagcctgaccatctcctgtggacttctgaggaaatccatcaggttgaagagctaaaananatagctcataactgcccctgtcctagccttaccttccctagaaaagccatttcaccttttcgttaacgtgaataatggggtagctttaggagtgcttacccaagaacacggaggccgccggcagcccgtggccttcctgtcaaaagttttagacccagtnacctgtgggtggcctcaatgcattcaatccatcgcggctacagcantattagctgaagaaagcaggaagttaacctttgggggaaaattaacggtaagcacgccccaccaagttagaannctatcttaaaccaaaaagcagggaggtggctcactgactcaagaatcttaaagtacgaggctattctactagaaaaagatgagagagcacgcatgtttagatttaattgactaccatacaaaagtcngaccagacttaggagagactcccttcaagacggggcggcacttattcatagatggctcctcccgggtgattgagggaaaaagacgcaacgggtattcagtaattgatggagaagctctnnntgcgnaagaatagagtcaggaagactgcctaataattggtctgcccaaacntgtgagctgtttgcactcagccaagctttaaagcacttgcaaaaccaggaaggaaccatctatactgattctaagtacgcctttggggtggctcatacatttggaaaaattcggactgaacgaggtcttattaatagtaaaggccaagaccttgttcataaggagttaatcacccaagtattnaataacctccagttgccagaagagatagctattgtccatgtccccgggcaccagaaaggcctntctttcgaaagtcgaggaaataacctngcagatcagatagccaaacaagctgccgtttcttctgaaacgcctgtttttcacttaactccttgccttcctccccctaccgcaatccccattttctcttccgctgaaaaagaaaaataaaaataggagctaaagnagaanaccagaagggaaatgggtattaccagatcaaagggaaatgttatccaaacctctcatgagggaggtcttgtctcagctgcatcaagggacccactggggaccccaagcnatgtgcgacgcagttctcagggtttatgggtgtataggaatttataccctggccaaacaagttacagatagttgcttaatatgtaaaaagactaataagcagactctaagaaaaccgccccttggaggaagaaatccagggctaagaccattccaaagtgttcaattgattacaccgaaatgcccccaattggtcgcctaaaatacttattagtaatagtagatcaccttacccactgggtagaggctatccccttctcaagtgcaaccgccagtaatgtagttaaggcattaattgaaaatatcgtacccaggtttggactaatagaaaatattgattcagataatggaacccatttcactgcacatgtcattaaaaagctagcccaagtactaganataaaatgggaataccataccccctggcacccatcctcntcaggaagagtagaaaggatgaaccagactctaaaaagccacttaaccaaattagttctagagactcggttgccatggactaaatgtcttcctattgccttgttaagaatccgaactgcccctcggagagatattggcctntccccttatgaaatgctntatgggttgccctatttacactccactgctgacattcctacgtttgaaacaaaagatcagttcctcaaaaactatatacttggtctatcctccactttctcttcccttaggactaaaggcctcctagcacaggcgccacccctggagtttccagcacatcagcatcagcctggagaccacgtcctcatcaaagggtggaaggaagggaaactcgaaccagcttgggaaggaccctacctagtgctcctaactactgagaccgcagtccgnacagcngaaagaggatggactcaccacacccgagtcaaagaggcgccgccacctccagaatcatgggccgtcaccccagggcccacccccaccaaactaactctaaaaagggcttaataatcacttgtttattttctcttttctttccaacagaaggtcatctcgtcatcaatgtaactcaggctaaccatcccttaacccttcagttcgacgcttgttcagtcatcccgtgtggagacgagcaagctcaaaggcagctatcccatgtngataagtatctatgtccataccgcaaagagtcaaccaagtataagtatggagccttaaaaagtccctgtggtgactgggcagatgtttggggaccactcagtacggagggtggacagccaggcccccttttcaaataagttacggggactaaaacagaaactccaactngtccgtggtcccaccccaccaaattgtaagccattgcagtgtaaccccttattgctaattatagataatccccggacaatggcccaagaaccctctatattcgaacggtatgggttaggagcagatgttacaggacgggaccccataggaatcttcgaccactggttaacaacgataatnanaaagaaatccagacccagagtccgggaaacgcgtgggacccaacgctctccccaagcatagcgagcccagcgtcctcctcccatctccagaacgacccaaccaaggtaacggttgtggaggtaaaagatttaaggcaaactatagctctagagacagggtaccaagatgcaaatgcctggctggaatggattaaatattccgtccgcactctaaacaaaagcgantgttacgcttgtgcgcacggtagaccagaggcccagattgtcccctttccactcggatggtcttccagccgaccgggcatgagctgtatggtagctctcttccaagaccccacagcctggggtaacgaatcatgccgagctctctctctgctgttccctgaagtccgacaccctgcgggtcagcccccgagggcatcagcntccgtctcccgatgccaattttacctcgtgtctctcacgacagggggaaaacttggcattccttggagacctaacgggatgcagtgagcttaagcccttccaagagcttacccatcagtctgcccttagccatcctcgagcggatgtgtggtggtattgtggcggaccantactggacactgccaagtaactggagcggaacttgcgctctaatccaattggccatccctttcaccctggcatttcatcaaccagaaaggataaaaacnaaacatcgtnaaacaagagaggcccctcatgggtccttcgactctcatgtttatatagatgccattggagtcccgagaggagtgccagatgaatttaaggcccgaaatcaaatagctgcnggatttgaatctacgctnttctggtggttaactgtaaataaaaatgtagattggataaattacatctattacaaccagcaacgatttgttaactatactagagatgctattaaagggatagctaaacaattaggacccaccagccaaatggcctgggaaaatagaatagcattagacatgatactagcagagaaaggtggagtttgtgtcatgatcggaacccaatgctgtacttntatncctaataatactgctcccggcgggaccataacnaaagcattacaaggtcttactgccttatcnaatgagctagccaaaaattctggantaaacgatcccttcacaaatttaatgggaaattgttcggtagatggaaaggacttatgtcctcaatcctcacctctcttgccattgnaataggnntgcttattctcgtaggatgctgcatcataccctgtgcccgaggactaatacaaagacttattgaaacagctctcactaaaacctcttacgatcctcctcccccttattcaaataagcttttccttctagaagaccnaagtagaacaacggagccaaattatgctaaaaaggtttaagagaaagaattataaaanatcnaagaggggga
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 16 99.0 Weakly correlated
2 ZNF766 14 43.0 Weakly correlated
3 ZNF506 12 28.9 Highly correlated
4 ZNF723 12 15.2 Moderately correlated
5 ZNF726 11 28.9 Highly correlated
6 ZNF263 10 180.0 Weakly correlated
7 ZNF251 9 94.0 Weakly correlated
8 ZNF394 9 99.0 Weakly correlated
9 ZNF2 9 99.0 Weakly correlated
10 ZFP37 8 99.0 Weakly correlated
11 ZFP69B 7 99.0 Weakly correlated
12 ZNF101 6 43.0 Weakly correlated
13 ZKSCAN1 6 160.0 Weakly correlated
14 ZNF793 6 99.0 Weakly correlated
15 ZNF562 5 28.9 Highly correlated
16 ZNF705B 4 28.9 Highly correlated
17 ZNF558 4 99.0 Weakly correlated
18 ZNF534 4 19.6 Moderately correlated
19 ZNF679 4 28.9 Highly correlated
20 ZNF610 4 28.9 Highly correlated
21 ZNF324 4 99.0 Weakly correlated
22 ZNF317 4 99.0 Weakly correlated
23 ZNF18 4 160.0 Weakly correlated
24 ZNF331 3 94.0 Weakly correlated
25 ZNF589 3 28.9 Highly correlated
26 ZNF41 3 99.0 Weakly correlated
27 ZKSCAN8 3 160.0 Weakly correlated
28 ZNF282 3 319.0 Weakly correlated
29 ZNF680 3 28.9 Highly correlated
30 ZNF169 3 94.0 Weakly correlated
31 ZNF705D 2 28.9 Highly correlated
32 ZNF197 2 99.0 Weakly correlated
33 ZFP57 2 87.0 Weakly correlated
34 ZNF486 2 8.6 Weakly correlated
35 ZNF75A 2 94.0 Weakly correlated
36 ZNF765 2 8.6 Weakly correlated
37 ZNF823 1 43.0 Weakly correlated
38 ZNF700 1 28.9 Highly correlated
39 ZNF701 1 28.9 Highly correlated
40 ZNF816 1 28.9 Highly correlated
41 ZNF808 1 19.6 Moderately correlated
42 ZNF792 1 94.0 Weakly correlated
43 ZNF674 1 99.0 Weakly correlated
44 ZNF641 1 99.0 Weakly correlated
45 ZNF605 1 99.0 Weakly correlated
46 ZNF597 1 94.0 Weakly correlated
47 ZNF561 1 43.0 Weakly correlated
48 ZNF479 1 6.4 Weakly correlated
49 ZNF468 1 28.9 Highly correlated
50 ZNF445 1 99.0 Weakly correlated
51 ZNF441 1 43.0 Weakly correlated
52 ZNF417 1 28.9 Highly correlated
53 ZNF354A 1 99.0 Weakly correlated
54 ZNF28 1 28.9 Highly correlated
55 ZNF274 1 99.0 Weakly correlated
56 ZNF257 1 0.0 Weakly correlated
57 ZNF222 1 43.0 Weakly correlated
58 ZNF175 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 10 15.2 Moderately correlated
2 ZNF506 7 28.9 Highly correlated
3 ZNF793 4 99.0 Weakly correlated
4 ZNF2 4 99.0 Weakly correlated
5 ZNF534 3 19.6 Moderately correlated
6 ZNF417 1 28.9 Highly correlated
7 ZFP57 1 87.0 Weakly correlated
8 ZNF41 1 99.0 Weakly correlated
9 ZNF75A 1 94.0 Weakly correlated
10 ZNF479 1 6.4 Weakly correlated
11 ZNF257 1 0.0 Weakly correlated
12 ZNF816 1 28.9 Highly correlated
13 ZNF705B 1 28.9 Highly correlated
14 ZNF680 1 28.9 Highly correlated
15 ZNF282 1 319.0 Weakly correlated
16 ZNF263 1 180.0 Weakly correlated
17 ZNF674 1 99.0 Weakly correlated
18 ZNF468 1 28.9 Highly correlated
19 ZNF597 1 94.0 Weakly correlated
20 ZNF317 1 99.0 Weakly correlated
21 ZNF766 1 43.0 Weakly correlated
22 ZNF169 1 94.0 Weakly correlated
23 ZNF101 1 43.0 Weakly correlated
24 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF506 28.9 Highly correlated
2 ZNF723 15.2 Moderately correlated