ZRdb KZFP & Repeats
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LTR_HERVFH19

  • Name
    HERVFH19
  • Repbase
    HERVFH19I
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000181
Description :

Associated long terminal repeat is LTR19.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tttggtgccgaaacccgggacgggtgttgggggcagaggctctcttgcaacccaggaagcagtgggcagcggcagctcatcctgagttaactcctggatcctgagggtctctggccacccgccccgtcttttctctcacttcacttttcgagcgatttgcgtgaggaggacaactgacctgaaggggactgcgaggctcgggccggggctactccccggtgggctctcaaaaccctcaggtctcaggaatccacctccgaccgcccgcaatgggtatttcgctctctanccctctctccctcttcctcccttctctctctctctctctctctctctctccgttcctcgtgcggctccagtccgggaggccctttgccgattccaaccggaacatccaacatcggacactaatccagccgnctggtaagatctgccttcccctggctttctcgcggtacccgggaaagtcaggtctgccgtccnggtcctcggaggaccagcgggactaagctagaggaaatcttggggacgcccagtttcttctcagcttaaccgtcctctttagaaagaggattccgggtctctgtctttcgtctggggacgcctagaacaaaaacagacaccctcggcttcctcttaccagtccacatgggtgccaaacaatcccacatccctacgtcctccccactgggctgtctccttcacaacctcgccaaacttggcttacgggggagcctaaagccaaagcatttagttttttattgcaacacggcctggccccaatacaaattagataacgacagccgatggcccaaaaacggcacctttgactttcaaattctcagggaccttgacaactttataaccaggaacggcaaatggcaagaggttccctatattcaggctttcttctaccttaaatcccgaccctccctatgtcaagcttgcacccctcatgaaatccttcttcttaatgaaaaccctccccgggtctccccttcctccgnancccntncnnccgnnnnnnnnnncgnnaaaaccccttcctccgaaaccccttttgaccctgcagatgaaccccctccgtattctcaaccccctgcatccgctcctcgcccgnccgaaccctccgccccgncggcccctcctgcccccaagcctttagccccaaaccccgcccctcctccttctccaccngttacccgttcaaaaactaccagtcaaaccacctctgccattctccctctccgggaagtggctggggttgaaggcattgctcgcgttcatgtccctttctccacgtctgatttgtcgcagatcaaacagcacctgggatctttctctgaaaatccctctcgttatcgcagggaattcctgcacataacccaatcctttaatttaacttggcatgacatttatataattctaacctccaccctcactcctgatgaaaaggagcgcatctggcgttcagctgaagcccacgcagatgaactccataatcaagcccctatacaaaatccagtggccaacgatgcagtcccccgtagagacccagattggacttaccaacagggagacantggcatcaggcgaagagaccacgtgattacctgtcccctcgcgggcatggacaaaaatgcccataaggcagttaattatgaaaaactcagagaaattacacaagagccccaggaaaatcctgcccttttcttatcacgcctcactgaagctatgctaaaatataccaatttggacccagaatctagagaaggtcaaacttttctccacctccaatttgtttcccaatccgccccagatatccagaaaaaattataaaaattagaggagggtccccagacatctcggcgggacctcctaaatgcggccttccgtgtctttaacaacagagacgaggaacaaaaaattcaaaaagacaaacatctccgtttaaaataccagatgctcgcctctgctgtccaaaagtcagttacacaaaagcctcccgataacccgaaaggaaactcccccacctctccgggagtctgtttccgatgtggcaaccctggacactgggcaaaggcttgtcctaacccccggccccccaccaaaccgtgcccaacttgcggtctttggggacactggaaaatggactgcccccaacggggacaccttccccgttcgggtgcggctcataatgaagccccctgaccatcacaggaggaaatctcttcactgctggcgctgacaacggaggactgagggtgcccgggatccttcgcccccacgtccagtgagtccacggaacccagggtaattgggacggtatccggtaagattatttcctttcttttggatactggggcgagcctatcggtattaactgaatatcaaggcccattagaacgttcatccgtttctgttgttggcatgaagggcatacaagaaaccccatacaaaacaccgccnctatactgctcatttcagggagtcaccttcactcactctttcttggtcattcctcattgtcccactcctttactaggaagggacatcctacacaaactagggggaatcattcatttatcggccctacaccaaagccacccttatttattattatgtcaagaacagaacccctcctcagacactcnacatcaaacagacttaaatcccaaattcctcagccaggtaaatcccatagtatggaacaccgactcccccataatagctacccaccattctccaattcaaatttcactgaaggatcctaagcgctatatagtggtcccacaatatcccctcaaccctaatggattacggggactcaagcccatcatctcccgacttttggctgccaatattttaatccccacccattctccccacaatactcctattctcccaattaaaaaaccggatggctcctatagactggttcaggatttgcgacaaatcaactccgctattgttcctgtttgtcctgttgtcccaaacccctacaccctcctatcgcgaattcctcccaacactagccatttctctgtattagacctcaaagatgccttttttactatccctctacatccctcctctcaaaacctttttgctttcacttggaccgaccctgacacaggctactcccaacaactcacctggactgtcctcccccaggggtttagggacagccctcactatttcggtcaggcacttcaattggacctctcccaactacctctacaacctagcattttgcttcaatatgtggacgatttactcctttgcagcccctctctagaacattgtattcaacacaccaccaagcttttaaattttttggctgaatgcgggtaccgggtatccaaaaggaaggcccaattaacctctccaaaagtttcatacctaggattaatcataactccaaatacccgagaaattccgccggcacgaaagcaaggcgttcaacaaatcccatttcctaaaacaaaaagggacttactttctttcctcggattagtgggatatttccgattatggatagcaaattttgccattatcgctaaacccctttatgaacacacaaaaggaaatcttgaccaaccactcactcccaccccagacctttatcatgctttctctcacctaaaacgtgccttattacaggcccccgctttaggccttccaaaccccctaagaccttttcatctatatttacacagttctcataatcaggcccttggactattagcccaacccatgggagactccctccaaccagtggcatatttttcaaaacaactagaccccatttacaaaanctggcccctttgcttaaaaattttggccacagcctctctaattatccctgaggcacaaaaactcacgttctacgaaccccttcaggtattttcttctcacagtctacaagatatgctcagccataaggcgctcacctccatctcatcctctcgcatgcaagccctacattcaactctccttcaaccctctatctctcttcatagatgctcccctcctaatcccgccactcttttaccttcaacaccaattttggaccccgaccaacactcatgctctgatctaattgaaagttctctcaccatgtttcaccaccttacttccactcacataaagggagccccagattggtttatagatggcagcgcatcaaaaaaccctcccctccaagcaggatatgccatcattgagggatatcatgatgatacccactctctcccacctagaagagtcgtagaggctgcccccttgcctttgggcacatcctcccaacaagcagaattagttgccctaataagagcactaaccctagcaaaaaacacacaagttaatatatacaccgattctaaatatgcctataacatcatccattccaatgcccaaatttggagcgagcggggctatctcacggctaagggaacccctatcattaatggaaaactaatccatcatctactaaaggcagctctacttccagaaaaggttgcagttatccattgcaaaggacatcaatcagacaaaagccacatttctttagggaaccgtgaggctgactattgggcaaaacacgcctcaaccaatcacccaattccccaatacctatttcccctcatacaacatatcccctccttttatccagaacaccaaacacaacaactaatcacggcgggggcacaattcaaacccccatactggttcatacaaaacaaattagtcctacctgaccctgaaaaaacaactcttttacgggacattcacaacctcttccacactagccattcccctctacaacatttcttaagttcccatatacacataaccccagatataaaggaacagttaaaagccatttcccatcaatgctctatttgccagaaagcttcaccccactccaacactagacccccttctttcccaacccatcaagccaggggacaccttccaggacaggactggcaaattgattttacccatatgcccccagtaaaaaaggttcgatttcttttagttctggttgataccttttcgggatgggtcgaggcttttcccacaaccaacaaacgagcttctactgtcacctccaaattaataacagaaatcatccccaggttcggggtgcctctttcttttcaatctgataatggtcctgaattcatttctcaaattactcaaacacttgcacaagccctacaaatcacctggaagctacacatcccctatcgacctcaatcttcaggaaaggttgaaaaaatgaatggcattctaaaaaacaccctcaccaggtactcactccaaacacataaagactgggttacacttttgcctttggcccttctaaaaattcgggcgctcccacgtaaacctttaatgctcagcccctttgaactcatgtatgggagaccactcgccccttttgttccacctcagggtcaagccccacctctaccaacccctctcgtttcccctcttctacataccatccgccatttcatttgggaatatgctgacaaatacctgccacaacccgtcgccgactcctctaatcccttcctacagccaggagactgggttctggtaaaagatcccagtcctacccccaattcccccctcacacctaaatggaagggaccttaccagatcatccttactacacccacggcagcaaaactccagggactccccagctggtttcattatacttctctcaagaaaacagacttcccttcaccacatacccaaacaaccaaatctaaaaccccttcagccttctcttgtgtctccacaggacccacttcccttcgcctcacccgaatcccggaggaaaaggaagagaaatccacataagccgcttatgtctctttctctcccaaactttcatcgcttcctaaccaaccttgttacagaccttcagtggtacccttacgaaactcccattatacatcctgatcagctccttactgttctatgggacctacggcttcaaggaactttccaggactttactcctacccaaataacttttttctctttttgcttgtttctttcaatataaattccctaatcacatcaacctcaccaatacaaccactcctcactgctctcaaactagaacgctctataaaccttacacaatccctcttgctgcaagctaactcttcctttgctccggaatgctggatgtgcttatcgctgtcttcctcagcttacacagcccttcctacaccccttcatgaccttttaacaggaaacataaccctaatctataaactccaaaaaggagcttccttttttgaaagagctgacaccctggtcggcgattatcccacttccagggccaatcaggccaacaaattatttcaaacctattacaactccctacaacgccttaagccccaaggccctcccattgaagggcccataactaaacacaccccccttttacaacaagcctcactttgcttttcagcctctgagggaaatttccctgtagggtccttaacacctaaccaatgcaaccgcactatcattgttaaacacccctctgaccatcaaactaaccgagttgactaccaagtatcacctgaagcgaacggagcatttctgcaaccggctcgttttacagcctctccctcaaccaatgcctccggcctaacctgtgctgcccctagtgcccacctttttccatggctcaatatcaatggtgcaacatccgaccgcattaaatgtgtaaaaaataactcttcctatatctctactatagtgggtgtctccctggcctcctccttgtccacctggagtaatgaaccacaggaaagaaaaaacaccccatctttaattcacttgttttctttccatatctccgcctgtatttacgacaaaggcttgttctttttgtgtggcaccaacacatatctttgtctccccaccaaccggaccggaacctgtaccctagtttatctttctccctccattggactagttcctcctaatcaacctttgcccattccatccgtccaatatgttaggaaaaggagggccatccacgtcattcctttaatggctgccttaggtataacctccggacttggattgggagcaggcggattggccacctccttaacatactttaaagctctttcaacagaactacagggttctttagaagatatagcccgaagccttataagagtccaagaccaactagactcctcggctggagcagtcctccaaaacagacggggactagatcttataacggctgaaaaagggggcctctgcctctcattgggtgaggaatgttgcttctatctcaaccaatcgggcctagtaagagacgctgctgaaaaacttaaagaaagggctaaaaagctaagggaataccaaaacaaccaaatagattcttggtttgggaacaaaatcataacatgggtcatcccattcctgggccctctcctaataatatgcctaggactaatgttcttaccctgcctaattaacctttttcaaagatttttaaccgacagaatcatggccatttcgcagacaactacccaaaaacatctacagacggcgttgctcctgcagtcaatccgagaccaaaaaactctccgcccccccctcagcaggaagtagccagaaagaacacgtcgcccctcgtccttttnataactatagggtctggat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 10 15.2 Weakly correlated
2 ZNF766 7 43.0 Highly correlated
3 ZNF101 7 43.0 Highly correlated
4 ZNF705B 6 28.9 Moderately correlated
5 ZNF382 6 99.0 Weakly correlated
6 ZNF175 4 94.0 Weakly correlated
7 ZNF589 4 28.9 Moderately correlated
8 ZNF263 4 180.0 Weakly correlated
9 ZNF317 4 99.0 Weakly correlated
10 ZNF584 3 99.0 Weakly correlated
11 ZNF479 3 6.4 Weakly correlated
12 ZNF92 2 28.9 Moderately correlated
13 ZNF850 2 28.9 Moderately correlated
14 ZNF808 2 19.6 Weakly correlated
15 ZNF705D 2 28.9 Moderately correlated
16 ZNF506 2 28.9 Moderately correlated
17 ZNF320 2 28.9 Moderately correlated
18 ZKSCAN1 2 160.0 Weakly correlated
19 ZKSCAN8 2 160.0 Weakly correlated
20 ZNF197 2 99.0 Weakly correlated
21 ZNF169 2 94.0 Weakly correlated
22 ZNF680 1 28.9 Moderately correlated
23 ZFP57 1 87.0 Weakly correlated
24 ZIM3 1 87.0 Weakly correlated
25 ZNF845 1 28.9 Moderately correlated
26 ZNF780A 1 43.0 Highly correlated
27 ZNF735 1 28.9 Moderately correlated
28 ZNF133 1 99.0 Weakly correlated
29 ZNF141 1 43.0 Highly correlated
30 ZNF695 1 28.9 Moderately correlated
31 ZNF394 1 99.0 Weakly correlated
32 ZNF616 1 43.0 Highly correlated
33 ZNF251 1 94.0 Weakly correlated
34 ZNF534 1 19.6 Weakly correlated
35 ZNF519 1 19.6 Weakly correlated
36 ZNF257 1 0.0 Weakly correlated
37 ZNF490 1 43.0 Highly correlated
38 ZNF468 1 28.9 Moderately correlated
39 ZNF429 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 8 15.2 Weakly correlated
2 ZNF263 3 180.0 Weakly correlated
3 ZNF101 2 43.0 Highly correlated
4 ZNF705B 2 28.9 Moderately correlated
5 ZNF382 2 99.0 Weakly correlated
6 ZFP57 1 87.0 Weakly correlated
7 ZIM3 1 87.0 Weakly correlated
8 ZNF141 1 43.0 Highly correlated
9 ZNF169 1 94.0 Weakly correlated
10 ZNF468 1 28.9 Moderately correlated
11 ZNF735 1 28.9 Moderately correlated
12 ZNF317 1 99.0 Weakly correlated
13 ZNF479 1 6.4 Weakly correlated
14 ZNF680 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats