ZRdb KZFP & Repeats
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LTR_HERV9N

  • Name
    HERV9N
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0001303
Description :

Non-autnomous derivative of HERV9.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttttggcgaccacgaagggactatcgcctatcgccaagcggtgagtaccatcggacccctttcgcttgctattctgtcctatttttccttagaattcgggggctaaataccgggcacctgtcggccagttaaaagcgactagcgcggccgccggactaaagacacgggtgtcaggctttctgggaaagggctctctaacaacccccgactcttcggagttgggagcgttggtttgcctggaaccagcttccgcttttcctgtacttctgggctgagccgagggtcgacagagaggaaagccattcagctccggggtcccgacaacaagttggttgaccctgcggccatgagcggaactctcaaagtcacgtcgcccaagcgagactcgcccatctatcctatctatcctgacccttgcctcctgggtcctaatgcctgtcagacaaacttcctctcgcctctcttctccgaggctagtcccgcttctaaaaaccactccctgtctctggtgcttttctagtttctcctataagaatgatttctagtataaacttcaggactctgttcccttctttaggcacccgggctcaccaatcagaaagacataatttttgcccaaagccccgtcgggggggggactatctggaattttaggatccctcctcagactagcaggcctaacaaaagctattcctgaagctaggatatggggagcctcagaaatgatatccttcctattcatataagtgaggacaaaaggcgtcactcttccaaccctggagatcccttccctccctcagggtatggccctccacttcatttttggggcataacatctttataggacaggggtaaggtcccaatactaacaggagaatgcttaggactctaacaggttttcgagaatgcgtcggtaagggccactaaatccgatttttctcggtcctctttgtggtctaggaggacaggcaagggtgcaggttttcgagaatgcgtcggtaagggccactaaatccgaccttcctcggtcctccttgtggtctaggaggaaaactagtgtttctgctgctgcgtcggtgagcgcaactattccgatcagcagggtccagggaccgttgcgggttcttgggcaagaggtgtttctgctgctgcgtcggtgagcgcaactattccgatcagcagggtccagggaccgttgcgggttcttgggcagggggagaaacaaacaaaccaaaaccgcgggcggttttgtctttcagatgggaaacactcaggcatcaacaggctcacccttgaaatgcatcctaagccattgggaccaatttgacccgcaaaccctgaaaaagaggcggctcatttttttctgcactatggcctggccccaatattctctctctgatggggaaaaatggccacctgagggaagtataaattacaatactatcctgcagcttgaccttttctgtaagagggaaggcaaatggagtgaaataccttatgtccaagctttcttttcattgaaggagaatccacaactatgcaaagcttgcaatttacatcccacaggaggacctctcagcttacccccatatcctagcctccctatagctccccttcctattaatgataagcctcctctaatctcccccgcccagaaggaaacaagcaaagaaatctccaaaggaccacaaaaacccccgggctatcggttatgtccccttcaagctgtagggggaggggaatttggcccaacccgggtacatgtccccttctccctctctgatttaaagcagatcaaggcagacctggggaagttttcagatgatcctgataggtacatagatgtcctacagggtctagggcaaaccttcgatctcacttggagagatgtcatgctattgttagatcaaaccctggcctttaatgaaaagaatgcggctttagctgcagcccgagagtttggagatacctggtatcttagtcaagtaaatgatagaatgacagccgaagaaagggacaaattccctaccggtcagcaagccgtccccagtatggatccccactgggacctcgactcagatcatggggactggagtcgcaaacatctgttgacctgtgttctagaaggactaaggagaattaggaaaaagcccatgaattattcaatgatgtccaccataactcagggaaaggaagaaaatccttctgccttcctcgagcggctacgggaggccttaagaaaatatactcccctgtcacccgactcactcgagggtcaattgatcctaaaagataagtttattacccaatcagccgcagatatcaggagaaagctccaaaagcgagccctgggccctgaacaaaatctggaggcattattaaacctggcaacctcggtgttctataatagggaccaagaggaacaggccgaaaaggaaaagcgagatcagagaaaggccgcagccttagtcatggccctcagacaaacaaaccttggtggttcagagaggacagaaaatggagcaggccaatcacccggtagggcttgttatcagtgtggtttgcaaggacactttaaaaaagattgtccaacgagaaacaagctgccccctcgcccatgtccactatgccgaggcaatcactggaaggcgcactgccccagaggacaaaggttctctgggccagaagcccccaaccagatgatccaacaacaggactgagggtgcccggggcaagcgccagctcatgtcatcaccctcactgagccccgggtacgtttaaccattgagggccaggaaattgacttcctcctggacactggcgcggctttctcagtgttaatctcctgtcccggacagctgtcctcaaggtccgttaccatccgaggaatcctgggacagcctgtaaccaggtatttctcccacctcctcagttgtaattgggagactttgctcttttcacatgcctttcttgttatgcctgaaagtcccacacccttattagggagggacatattagccaaagctggagctattatctacatgaatatggggaacaagttacccatttgttgtcccctgcttgaggagggaatcaaccctgaagtctgggcattggaaggaacaaactcaagctccagccttaagccttcccacaggacaaaacttctctttatacgtcacagagagagcaggaatagctcttggagtccttactcagactcgtgggacaaccccacaaccagtggcatacctaagtaaggaaattgatgtagtagcaaaaggctggcctcactgtttacgggtagttgcggcggtggccgtcttagtgtcagaggctatcaaaataatacaaggaaaggatctcactgtctggactactcatgatgtaaatggcatactaggtgccaaaggaagtttatggctatcagacaaccgcctgcttagataccaggcgctactccttgagggaccggtgcttcaaatacgcacgtgtgcggccctcaaccctgccacttttctcccagaggatggggaaccaatcgagcatgactgccaacaaattatagtccagacttatgccgcccgagatgatctcttagaagtccccttagctaatcctgaccttaacctatataccgatggaagttcatttgtggagaatgggatacgaagggcaggttatgccatagttagtgatgtaaccgtacttgaaagtaagcctcttcccccagggaccagcgcccagttagcagaactagtggcacttacccgagccttagaactgggaaagggaaaaagaataaatgtgtatacagatagcaagtatgcttatctaatcctacatgcccatgctgcaatatggaaagaaagggagttcctaacctctgggggaacccccattaaataccacaaggaaaccatggagttattgcacgcagtgcaaaaacccaaggaggtggcagtcttacactgccgaagccatcagaaaggggaaggagaggggagaacagcagcataagcggctggcagaggcagggaaagaccagcagaaaggaaagagagaaagagacagaaagtcagagagagagagacagagagaggaagagagagacgaagaagtcaaagagagagatagaagtagtaaagaaaaaacagtgtaccctattcctttaaaagccagggtaaatttaaaacctataattgataattgaaggtcttctccgtaaccctataacactccaataccaccttgttgtcagtgtaaacaagggcgtagcccgaaagcactgaggccactgacaacccgtagccttcctatcaaaaatccttaacccagcaggtttcctaacaggggatctaaatcttaattaattaccatacaaaggtccgaccagacctaggaggaactcccttcaggacaggacgatagatggttcctcccgggcgattaagggaaaaagacacaatgggtattcagtaagtgataaggaaactcttgtagaagcagagttaggaaaattgcctaataattggtctgctcaaacgtgcgagctgtttgcactcagccaaaccttaaagtacttacagaatcaggaaggagccatctataccaattctaagttaatatggactgaacgaggtcttattaatagcaaagaataattgaaatcccaaacttacaaggttttcaacaaaagtaaagtttgctaaaagttaacagtgtaacatgtattatcctactaccacacactctcaaaggatttctcagacagtttgcaagaaataacgaaatctatccttactctacaatcccaaatagactctttggcagcagtgactctccaaaaccgccgaggcctagacctcctcactgctgagaaaggaggactctgcaccttcttaggggaagagtgttgtttttacactaaccagtcagggatagtacgagatgccgcccggcgtttacaggaaaaggcttctgaaatcagacaacgcctttcaaactcttataccaacctctggagttgggcgacatggcttctcccctttctaggtcccgtggcagccatcttgctattactcgccttcgggccctgtatttttaacctccttgtcaaatttgtttcctctaggatcgaggccatcaagctacagatggtcttacaaatggaaccccaaatgagctcaactaacaacttctaccgaggacccctggaccgacccgctggccctttcactggcctaaagagttcccctctggaggacactacaactgcagggccccttcttcgcccctatccagcaggaagtagctagagcggtcatcgcccaattcccaacagcagttggggtgtcctgtttagaggggggat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF728 39 19.6 Highly correlated
2 ZNF669 30 43.0 Weakly correlated
3 ZNF257 24 0.0 Weakly correlated
4 ZNF793 19 99.0 Weakly correlated
5 ZNF680 11 28.9 Weakly correlated
6 ZNF101 10 43.0 Weakly correlated
7 ZNF506 9 28.9 Weakly correlated
8 ZNF766 8 43.0 Weakly correlated
9 ZNF382 7 99.0 Weakly correlated
10 ZNF705B 6 28.9 Weakly correlated
11 ZNF479 5 6.4 Moderately correlated
12 ZNF616 5 43.0 Weakly correlated
13 ZNF679 5 28.9 Weakly correlated
14 ZNF705D 4 28.9 Weakly correlated
15 ZNF394 4 99.0 Weakly correlated
16 ZNF823 4 43.0 Weakly correlated
17 ZNF701 3 28.9 Weakly correlated
18 ZNF28 3 28.9 Weakly correlated
19 ZKSCAN8 3 160.0 Weakly correlated
20 ZNF320 3 28.9 Weakly correlated
21 ZNF589 3 28.9 Weakly correlated
22 ZNF587 3 28.9 Weakly correlated
23 ZNF417 3 28.9 Weakly correlated
24 ZNF682 2 28.9 Weakly correlated
25 ZNF723 2 15.2 Moderately correlated
26 ZNF584 2 99.0 Weakly correlated
27 ZNF792 2 94.0 Weakly correlated
28 ZNF554 2 99.0 Weakly correlated
29 ZNF92 2 28.9 Weakly correlated
30 ZNF175 2 94.0 Weakly correlated
31 ZNF324 2 99.0 Weakly correlated
32 ZNF133 1 99.0 Weakly correlated
33 ZNF19 1 99.0 Weakly correlated
34 ZNF700 1 28.9 Weakly correlated
35 ZNF18 1 160.0 Weakly correlated
36 ZNF189 1 99.0 Weakly correlated
37 ZNF707 1 74.0 Weakly correlated
38 ZNF141 1 43.0 Weakly correlated
39 ZNF264 1 99.0 Weakly correlated
40 ZNF100 1 28.9 Weakly correlated
41 ZKSCAN1 1 160.0 Weakly correlated
42 ZIM3 1 87.0 Weakly correlated
43 ZNF816 1 28.9 Weakly correlated
44 ZFP69B 1 99.0 Weakly correlated
45 ZNF8 1 99.0 Weakly correlated
46 ZFP57 1 87.0 Weakly correlated
47 ZNF263 1 180.0 Weakly correlated
48 ZNF486 1 8.6 Moderately correlated
49 ZNF2 1 99.0 Weakly correlated
50 ZNF641 1 99.0 Weakly correlated
51 ZNF317 1 99.0 Weakly correlated
52 ZNF611 1 19.6 Highly correlated
53 ZNF33A 1 99.0 Weakly correlated
54 ZNF354C 1 99.0 Weakly correlated
55 ZNF559 1 74.0 Weakly correlated
56 ZNF558 1 99.0 Weakly correlated
57 ZNF41 1 99.0 Weakly correlated
58 ZNF549 1 87.0 Weakly correlated
59 ZNF534 1 19.6 Highly correlated
60 ZNF528 1 43.0 Weakly correlated
61 ZNF44 1 43.0 Weakly correlated
62 ZNF490 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF669 18 43.0 Weakly correlated
2 ZNF793 13 99.0 Weakly correlated
3 ZNF680 6 28.9 Weakly correlated
4 ZNF823 4 43.0 Weakly correlated
5 ZNF28 3 28.9 Weakly correlated
6 ZNF320 3 28.9 Weakly correlated
7 ZNF705D 2 28.9 Weakly correlated
8 ZNF257 2 0.0 Weakly correlated
9 ZNF587 2 28.9 Weakly correlated
10 ZNF705B 2 28.9 Weakly correlated
11 ZNF616 2 43.0 Weakly correlated
12 ZNF766 2 43.0 Weakly correlated
13 ZNF728 2 19.6 Highly correlated
14 ZNF549 1 87.0 Weakly correlated
15 ZNF506 1 28.9 Weakly correlated
16 ZNF264 1 99.0 Weakly correlated
17 ZNF641 1 99.0 Weakly correlated
18 ZNF189 1 99.0 Weakly correlated
19 ZNF33A 1 99.0 Weakly correlated
20 ZNF534 1 19.6 Highly correlated
21 ZNF707 1 74.0 Weakly correlated
22 ZFP57 1 87.0 Weakly correlated
23 ZNF263 1 180.0 Weakly correlated
24 ZNF816 1 28.9 Weakly correlated
25 ZNF723 1 15.2 Moderately correlated
26 ZNF479 1 6.4 Moderately correlated
27 ZNF417 1 28.9 Weakly correlated
28 ZNF44 1 43.0 Weakly correlated
29 ZNF41 1 99.0 Weakly correlated
30 ZNF100 1 28.9 Weakly correlated
31 ZKSCAN1 1 160.0 Weakly correlated
32 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF680 28.9 Weakly correlated
2 ZNF793 99.0 Weakly correlated