ZRdb KZFP & Repeats
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LTR_HERV9

  • Name
    HERV9
  • Repbase
    HERV9
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000173
Description :

gag ~1287-2747, pol ~2748-6323, env ~6740-8380.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttttggcgaccacgaagggaccatcgcctatcgccaagcggtgagactatcgcctatcgccaagcggtgagtaccatcggacccctttcgcttgctattctgtcctatttttccttagaattcgggggctaaataccgggcacctgtcggccagttaaaagcgactagcgcggccgccggactaaagacacgggtgtcaggctttctgggaaagggctctctaacaacccccgactcttcggagttgggagcgttggtttgcctggaaccagcttccgcttttcctgtacttctgggctgagccgagggtcgacagagaggaaagccattcagctccaggggtcccgacaacaagttggttgaccctgcggccatgagcggaactctcaaagtcatgtcgcccaagcgagactcgcccatctatcctatctatcctgacccttgcctcctgggtcctaatgcctgtcagacaaacttcctctcgcctctcttctccgaggctagtcccgcttctaaaaaccactccctgtctctggtgcttttctagtttctcctataagaatgatttctagtataaactccaggactctgttaccttctttaggcacccgggctcaccaatcagaaagacataatttttgcccaaagccccatcgtaggggggactatctggaattttaggatccctcctcagacnagcaggcctaacaaaagctattcctgaagctaggatatggggagcctcagaaattgtatccttcctattcatataagtgaggacaaaaggcgtcactcttccaactctggagatcccttccctccctcagggtatggccctccacttcatttttggggcataacatctttataggacacgggtaaggtcccaatactaacaggagaatgcttaggactctaacaggttttcgagaatgcgtcggtaagggccactaaatccgatttttctcggtcctctttgtggtctaggaggacaggcaagggtgcaggttttcgagaatgcgtcggtaagggccactaaatccgaccttcctcggtcctccttgtggtctaggaggaaaactagtgtttctgctgctgcgtcggtgagcgcaactattccgatcagcagggtccagggaccgttgcgggttcttgggcaagaggtgtttctgctgctgcgtcggtgagcgcaactattccgatcagcagggtccagggaccgttgcgggttcttgggcagggggagaaacaaacaaaccaaaaccgcgggcggttttgtctttcagatgggaaacactcaggcatcaacaggctcacccttgaaatgcatcctaagccattgggaccaatttgacccgcaaaccctgaaaaagaggcggctcatttttttctgcactatggcctggccccaatattctctctctgatggggaaaaatggccacctgagggaagtataaattacaatactatcctgcagcttgaccttttctgtaagagggaaggcaaatggagtgaaataccttatgtccaagctttcttttcattgaaggagaatncacaactatgcaaagcttgcaatttacatcccacaggaggacctctcagcttacccccatatcctagcctccctatagctccccttcctattaatgataagcctcctctaatctcccccgcccagaaggaaacaagcaaagaaatctccaaaggaccacaaaaacccccgggctatcggttatgtccccttcaagctgtagggggaggggaatttggcccaacccgggtacatgtccccttctccctctctgatttaaagcagatcaaggcagacctggggaagttttcagatgatcctgataggtacatagatgtcctacagggtctagggcaaaccttcgacctcacttggagagatgtcatgctattgttagatcaaaccctggcctttaatgaaaagaatgcggctttagctgcagcccgagagtttggagatacctggtatcttagtcaagtaaatgatagaatgacagccgaagaaagggacaaattccctaccggtcagcaagccgtccccagtatggatccccactgggacctcgactcagatcatggggactggagtcgcaaacatctgttgacctgtgttctagaaggactaaggagaattaggaaaaagcccatgaattattcaatgatgtccaccataactcagggaaaggaagaaaatccttctgccttcctcgagcggctacgggaggccttaagaaaatatactcccctgtcacccgactcactcgagggtcaattgatcctaaaagataagtttattacccaatcagccgcagatatcaggagaaagctccaaaagcgagccctgggccctgaacaaaatctggaggcattattaaacctggcaacctcggtgttctataatagggaccaagaggaacaggcccaaaaggaaaagcgagatcagagaaaggccgcagccttagtcatggccctcagacaaacaaaccttggtggttcagagaggacagaaaatggagcaggccaatcacccggtagggcttgttatcagtgtggtttgcaaggacactttaaaaaagattgtccaacgagaaacaagccgccccctcgcccatgtccactatgccgaggcaatcactggaaggcgcactgccccagaggacaaaggttctctgggccagaagcccccaaccagatgatccaacaacaggactgagggtgcccggggcaagcgccagctcatgtcatcaccctcactgagccccgggtacgtttaaccattgagggccaggaaattgacttcctcctggacactggcgcggccttctcagtgttaatctcctgtcccggacggctgtcctcaaggtccgttaccatccgaggaatcctgggacagcctgtaaccaggtatttctcccacctcctcagttgtaattgggagactttgctcttttcacatgcctttcttgttatgcctgaaagtcccacacccttattagggagggacatattagccaaagctggagctattatctacatgaatatggggaacaagttacccatttgttgtcccctacttgaggagggaatcaaccctgaagtctgggcattggaaggacaattcggaagggcaaaaaatgcccgcccagtccaaatcaggctaaaagaccccaccacttttccttatcaaaggcaatatcccttaaggcctgaagctcataaaggattacaggatattgttagacatttaaaagctcaaggcttagtaaggaaatgcagcagtccctgcaacaccccaattctaggagtacaaaaaccgaacggtcagtggagactagtgcaagatcttagactcatcaatgaggcagtaattcctctatatccagttgtacccaacccctataccctgctctctcaaataccagaggaagcagaatggttcactgttctggacctcaaggatgccttcttctgtattcccctgcactctgactcccagtttctctttgcctttgaggatcccacagaccacacgtcccaacttacgtggacggtcttgccccaagggtttagggatagccctcatctgtttggtcaggcactggcccaagatctaggccacttctcaagtccaggcactctggtccttcagtatgtggatgatttacttttggctaccagttcggaagcctcatgccagcaggctactctagatctcttgaactttctagctaatcaagggtacaaggcgtctaggtcgaaggcccagctctgcctacagcaggtcaaatatctaggcctaatcttagccagagggaccagggccctcagcaaggaacgaatacagcctatactggcttatcctcgccctaagacattaaaacagttgcgggggttccttggaatcaccggcttttgccgactatggatccccggatacagcgagatggccaggccnctctatactctaatcaaggagacccagagggcaaatactcatctagtagaatgggaaccagaggcagaaacagccttcaaaaccttaaagcaggccctagtacaagctccagccttaagccttcccacaggacaaaacttctctttatacgtcacagagagagcggggatagctcttggagtccttactcagactcgtgggacaaccccacaaccagtggcatacctaagtaaggaaattgatgtagtagcaaaaggctggcctcactgtttacgggtagttgcggcggtggccgtcttagtgtcagaggctatcaaaataatacaaggaaaggatctcactgtctggactactcatgatgtaaatggcatactaggtgccaaaggaagtttatggctatcagacaaccgcctgcttagataccaggcgctactccttgagggaccggtgcttcaaatacgcacgtgcgcggccctcaaccctgccacttttctcccagaggatggggaaccaatcgagcatgactgccaacaaattatagtccagacttatgccgcccgagatgatctcttagaagtccccttagctaatcctgaccttaacctatataccgatggaagttcatttgtggagaatgggatacgaagggcaggttatgccatagttagtgatgtaacngtacttgaaagtaagcctcttcccccagggaccagcgcccagttagcagaactagtggcacttacccgagccttagaactgggaaagggaaaaagaataaatgtgtatacagatagcaagtatgcttatctaatcctacatgcccatgctgcaatatggaaagaaagggagttcctaacctctgggggaacccccattaaataccacaaggaaattatggagttattgcacgcagtgcaaaaacccaaggaggtggcagtcttacactgccaaagccatcagaaaggtgaaggagaaaaggcagaaggaaaccgtcgggcagatgctgaggccaaaattgctgccaggcggaacctcccattagaaatacctacggaaggacccttggtatggaacaaccccctccaagagattaagccccagtattccccgactgaaacagaatggggactttcacgggggcatagttttctcccctcggggtggttaacgacagaagaaggaaaggtacttatacccgaagccagccagtggaaaatacttaaaaccctccaccaaacttttcatatgggtattgaaaacactcatcaaatggccaaatccctatttacagggccaaatctcctccggaccatccgacaggtagtcaaagcctgtgaggtgtgccaaaggaataatcccttggtccatcgtaaggcccctttgggggaacaaagaataggtcactatcccggagaggactggcagttagacttcacccatatgcctaagtcaaagggatttcaatacttgttggtctgtgttgatacctttacaaattggatagaagctttcccctgcaagacagagaaggctcaggaagtgattaaagtcctaattcatgaaataattcctagatttgggcttccccaaagcttacagagtgacaatggtccggcttttaaagccacgataactcagggaatttccagggcgctagggatacaatatcaccttcactgcgcctggaggccacaatcctcagggaaggtcgagaaggcaaatgaaacactcaagaggcacttaaggaaactaacacaagaaactcatctcccatggcctactcttttgcccatggccttgttgagaatccgaaattctcctcacaaaatggggctcagtccatatgaaatgctgtatggacgaccttttctcacaaatgacctcctacttgatcaggaaacggccaacttggtcaaagatataacttctttggcaaaatatcaacaaaaccttaaaaacctacctgaaggatgtcacagagaaaagggaacagagttgtttcaaccaggagatctagtgttggtcaaatctctcccctctacctccccatctatggactctttgtgggaaggaccatactcggtaatcctctctacccccactgcagttaaggtggcaggagtggaatcttggattcaccacacccgagttaaactttggacaccccctgaggaacctgcgggaccgtcagctcaggagtcccaagatcagccagaccagcctcgatacacctgcgaaccgttggaggacttgcatctcctatttcggaaggaaacatcccagactaaaaaggctcctaccactgatcctgaggaaaaaccccttcctccttaaaaaagataagtgaaaacctacataatctttatctttaacacctctccttgcccctttaatggaatccttttactatttcatcatattattaagcagcatactaaccatactctttgcgataggactatatactgtagctcctgccgggacgaaaatcctaatcacatcaaccttctttctatcttccttccttctgacagcaatttactcctacctttaactcagactggataaaatgatctcgtcttccagagcaccctctttaccttcctatttactctttgcctatctatccctcctgcttccttggatacctcatacaatcacccctccccttccactagctcctaattacctctacaagactctcaacttaacccactctctgttaaaccagtccaatccttccctggcaaatgactgttggctttgtatctctctatcaacctctgcttacgttgccactcccattcccgcaaaaaanctgggtctttaccaacttaacctaccaccctcgttatgaaggaaaagaccctttccgacttctaaatatgcaatcattagccgacttccccatctctgataggaccaagaataccctaacaggacgtgcaatccaacttttacgttcttacatttccaacctcacctattacacaagcaatgaaaagcccatacacggccctgtaactacgaataccatcttaactttccaagcccctttatgcatccaacgcaacctgttatcaggcctgcccctggggcacctactaccccatcagtgtaattacaccctacaacttcaagccccaactgatcatagtaacttccgagtcacccaaacagctccattcagatggcttgtccgcttctcagggcccccaaaaatcatcacctcctccctgcttaacaaacagtccaggttttgtaatggcaaacatactccctgcatgaccattcacccctggaccccctgcagcagcgcccccaccactagtgaatgccttctcatcccctctttcaatcactctctcgaatggttcctagtagatacaaaacggttttttctccaatgggaaaatagaacacagggagccactcagtttgctcccaacacccctttccagccgctcaccggagctaccttggcaagtactctaggagtatgggaaaatgaaaacaacaaactcacacacctttttaacatacacaaccagttctgtctacccagccaaggcatattcttcttatgtggaacgtcgacctatatctgcctccccactaactggacaggcacctgcaccttagtcttcctaagtcccaacattaacattgccccaggaaatcagaccctatcagtgcccctcaaagctcaagtccgtcagcgcagggccatacaactaatacccctacttatagggttaggaatggctactgctacaggaaccggaatagccggtttatctacttcattatcctactaccacacactctcaaaggatttctcagacagtttgcaagaaataacgaaatctatccttactctacaatcccaaatagactctttggcagcagtgactctccaaaaccgccgaggcctagacctcctcactgctgagaaaggaggactctgcaccttcttaggggaagagtgttgtttttacactaaccagtcagggatagtacgagatgccgcccggcgtttacaggaaaaggcttctgaaatcagacaacgcctttcaaactcttataccaacctctggagttgggcgacatggcttctcccctttctaggtcccgtggcagccatcttgctattactcgccttcgggccctgtatttttaacctccttgtcaaatttgtttcctctaggatcgaggccatcaagctacagatggtcttacaaatggaaccccaaatgagctcaactaacaacttctaccgaggacccctggaccgacccgctggccctttcactggcctagagagttcccctctggaggacactacaactgcagggccccttcttcgcccctatccagcaggaagtagctagagcggtcatcgcccaattcccaacagcagttggggtgtcctgtttagaggggggat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF669 90 43.0 Weakly correlated
2 ZNF723 68 15.2 Moderately correlated
3 ZNF728 42 19.6 Moderately correlated
4 ZNF793 39 99.0 Weakly correlated
5 ZNF257 31 0.0 Weakly correlated
6 ZNF680 22 28.9 Highly correlated
7 ZNF766 14 43.0 Weakly correlated
8 ZNF506 14 28.9 Highly correlated
9 ZKSCAN1 11 160.0 Weakly correlated
10 ZNF320 11 28.9 Highly correlated
11 ZNF479 10 6.4 Weakly correlated
12 ZNF28 9 28.9 Highly correlated
13 ZNF175 7 94.0 Weakly correlated
14 ZNF589 7 28.9 Highly correlated
15 ZNF382 7 99.0 Weakly correlated
16 ZNF101 5 43.0 Weakly correlated
17 ZNF679 4 28.9 Highly correlated
18 ZFP57 4 87.0 Weakly correlated
19 ZNF347 4 43.0 Weakly correlated
20 ZKSCAN8 4 160.0 Weakly correlated
21 ZNF8 3 99.0 Weakly correlated
22 ZNF18 3 160.0 Weakly correlated
23 ZNF584 3 99.0 Weakly correlated
24 ZNF735 3 28.9 Highly correlated
25 ZNF701 2 28.9 Highly correlated
26 ZNF705B 2 28.9 Highly correlated
27 ZNF641 2 99.0 Weakly correlated
28 ZNF616 2 43.0 Weakly correlated
29 ZIM3 2 87.0 Weakly correlated
30 ZNF534 2 19.6 Moderately correlated
31 ZFP69B 2 99.0 Weakly correlated
32 ZNF786 2 99.0 Weakly correlated
33 ZNF792 2 94.0 Weakly correlated
34 ZNF823 2 43.0 Weakly correlated
35 ZNF878 2 43.0 Weakly correlated
36 ZFP37 1 99.0 Weakly correlated
37 ZNF850 1 28.9 Highly correlated
38 ZNF707 1 74.0 Weakly correlated
39 ZNF169 1 94.0 Weakly correlated
40 ZNF136 1 74.0 Weakly correlated
41 ZNF141 1 43.0 Weakly correlated
42 ZNF677 1 99.0 Weakly correlated
43 ZNF2 1 99.0 Weakly correlated
44 ZNF610 1 28.9 Highly correlated
45 ZNF547 1 74.0 Weakly correlated
46 ZNF197 1 99.0 Weakly correlated
47 ZNF202 1 160.0 Weakly correlated
48 ZNF445 1 99.0 Weakly correlated
49 ZNF441 1 43.0 Weakly correlated
50 ZNF440 1 28.9 Highly correlated
51 ZNF417 1 28.9 Highly correlated
52 ZNF394 1 99.0 Weakly correlated
53 ZNF251 1 94.0 Weakly correlated
54 ZNF263 1 180.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 71 15.2 Moderately correlated
2 ZNF669 55 43.0 Weakly correlated
3 ZNF793 30 99.0 Weakly correlated
4 ZNF680 13 28.9 Highly correlated
5 ZNF320 8 28.9 Highly correlated
6 ZNF28 8 28.9 Highly correlated
7 ZKSCAN1 7 160.0 Weakly correlated
8 ZNF506 4 28.9 Highly correlated
9 ZNF257 3 0.0 Weakly correlated
10 ZNF735 3 28.9 Highly correlated
11 ZNF479 2 6.4 Weakly correlated
12 ZIM3 2 87.0 Weakly correlated
13 ZNF616 2 43.0 Weakly correlated
14 ZNF641 2 99.0 Weakly correlated
15 ZNF823 2 43.0 Weakly correlated
16 ZNF175 1 94.0 Weakly correlated
17 ZNF263 1 180.0 Weakly correlated
18 ZNF534 1 19.6 Moderately correlated
19 ZNF589 1 28.9 Highly correlated
20 ZNF440 1 28.9 Highly correlated
21 ZNF136 1 74.0 Weakly correlated
22 ZNF705B 1 28.9 Highly correlated
23 ZNF766 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN1 160.0 Weakly correlated
2 ZNF28 28.9 Highly correlated
3 ZNF320 28.9 Highly correlated
4 ZNF680 28.9 Highly correlated
5 ZNF723 15.2 Moderately correlated
6 ZNF793 99.0 Weakly correlated