ZRdb KZFP & Repeats
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LTR_HERV35I

  • Name
    HERV35I
  • Repbase
    HERV35I
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000171
Description :

Internal sequence of an endogenous retrovirus with associated LTR35LTRs. This is an ancient, non-autonomous LTR retrotransposon. The primerbinding site is complementary to proline tRNA.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
attctttcggggctcgtccgggatcacgggacgtggggagcattttcctccccggagggggaggcttgtgagccagcaggacngccgggcgtgaccccttcgcggctgacgggcggccgcctgaatctttgattcagcgtcgccgcaactggtgagttttcctccggcctcccggagactcctcgccanccccccacagacaatgcttttcctcccctcctgtccccnntattcgttgtgtctttctttttccttcttctttccgncgcccnnnncgctttccctctcttccttcgcttttcattaacttcatcggctcngcctgaatagacacccntgcgggacggattgaaacggcnnnnnnnnnnagctggttttggctcagcctgaatagacatccgtgcaggatggattgaaacggntgactnnccgggnctgatcggtccagctggtaggaaactctgtctggcgccctgcctttgacntccgtnntctngcctaagtcgnctnggtattgagtnccaagaaaannnnntctctctctccctttgtcactctccctncctggcaccctggcccttgatcctgtaactattcnaaacccntcattacttcacttcccttctngtggggaagggaggcctgtnatntttcngggcgtctgtctgtccgaacgtgtggtcctgtcagntnnggggnnnagantgcctnagacagggtgctggggatgcccggctggccttcaggaaggcaccaggnacacctgggtncgaagtttgcantattggtntcctgatccgnttttcctttacaataagaaaagttntgngtttaanttgacaacttnttcccccatgcagcccgttgggctgcatcttgcaaaaannnttgagaggcttttgcctatggttccatgaaatggaaaaggatgattttctttncgnnnnnnnnnctnttnnnnntgtaacgcggcttggcccccacagctatggcgcagcgagcagggtcaccaaaagccgctccgctcttccggaagccgcagngaaagggaacccagaaacctggcangccggcaaaagggtaagaatttcttaccagccaggcttctggcctctctctctctgtgcaaaccggttgagtgaacggtaaaaatcactgtttgtctcctctgcaaggttttgattaatgggaaaaaggatttgtgagactagtcttaggctgtagcgaatctggtgtactttgtgctatgaatttgtctttctgtgtcgttctgtcataaagaggggtaccataggatagaacgcgggcctaggacccctataagcccgctgttcgagccggccctgcagactggtcagttacaaactttgctgcgggtccctgaaacaaaaaccggatgaggtttccctctcgtcttgttttatgtccttgagagcttgactttgtgaccatgtgggggtactctctcttggtctccgccatccggagggcgggaattttcgggttcatgtcaggcggccggtctgaaaggaccgggagtccgagacgcgtcagcacactcttcgtccgaatgtgtcaagcccttgggtgagttttgtcttaaaaggtcccatccctacggggcttttgtcgtcttttgctatcttaagcccatttctgagagtgaattcttggggatcatggagatgcctcctctaccccctctctagaaatacctcttgcttatatggtnnccgnnaaaaacctggaaaattaccatctgggctttaaaaggcttttggattgagtcgctattggaactaagtacaccattaaaagaaaaaggattttagagatctcttattctaaacaattgatnaaaaaggtttaaattaaaagaaggatacataataatgtcatggctagccttaaaaattctcttgagcagttnaaaatcctttgcaagctcgaaantgnctgctctagactccttctgggaagagcaatggcgaccgccccatgctgtagctcagtagctaaggctttgccctttcacgatggcggcctgggttcaattcctggcttagggaatgagtcctttctggtttgatatttgtgtgacttttgccatttattgattcttttcccctccatggacagcttctgatttcctgtcttgaattttcctttctctgagctacctttggggtgattctagatcttgtaaaaaccgcttgccatctctttggagacacctcgtgcgtccgtggttaagtcataaccttagttaaggcttattggtttcacttgggaggatacctttggnnanaaaaaaanaaaaaaggcttaaaagccagaggtatcggctgtttgtcccggctaaagtctggtaataagagatttaaaaggntttttnttnnnnnaaaagagctctatggttaaaagtcagcttaattaaaagcngatatccaagctatatatatatttaaaaggcctttatgcttttttctcttcttggatcttgttttttgagaaaacgnnnnnnncgtttgagaaaaaaagtttttttttcttctcagtcgactgaattgtttctccatttacttctgtctgtcttcttgccaccctcgatgcccacatgagaggacctaaggtaatttctgacagcctgggactccttgggaaaaacagnnaaggcgccacagaccccgttttgggagaaacctctgttttcctcatggaaccccaagaactgtaagcggacaggtccctctcaaaatctaaggctctgctctgttttgcnttgcgtcgtnttacctgacctttttgacttttgggggcatcagaaattactttgcattatgagaaaacttttagccttggtgtgtaatagctaggtaagagatatacttttagggatggctaatggcagttgcttacagtgagtggttattactacagggcgatactcctttctttgcgcgtttagataagaaaagcgtgctcttgggcacctagaaggtatggaatggggggatgggctgattacagagtgggctgattggcnttgggttgcccaccagcctcggggaaatgtccttgcaatgaaatgcaccgtggaagcattgcactgtctcgtcccgtagcgtttccctcttttnggggacccaggattcggtgtaaaaatgggatccttgatttttggggatctgttttgccttccagctgtgcctgcttattaggccctagaaactgcatgctttcctggccctgttccttaaaaggctccaccctaaagccagtaatccaattnagaaactnacatctttaaggaaatctccacgtgtaagagtgtctgcttttcctggccatcttaactgaacttttactcacaccatttttccttggtttgagtaaaatataaattctctaccttgtttcacctaagagtcgtccctttagaaatgcaaatttagagttgcctagctaacaattgtttagggcagggaacaggtaatcaagagactgatggtctaaaatgggaaagagaaacttaaaaactggcaaatgaaaaatcttataactctacnagatctgcttctgtctgtntatttatgtnttgtgtgtgtgatgtatatataaaagagctctaattaattggcttaaagaaaaataagcgcttaaatnaaatattttgtcagaaaaaatagaaacttnaatgccttttagttcacgtgactttagtaatctttggtaaataaagacagttttaaagattattggtaaaataaaataaaaacgtcttcaaaatttagacatttggtctaaattaggcaggtcagatactgtctttgctagatgctttaaggtcataaactgcttctntgacttttgataattgttcgacttgcctgctttagagccattagattctaggtaaggcctggggacatgtggagttagccatgccccctagctatgctggaaagagtcagacnttatctgcagttctgtcctgtgtcctaggctctgcacctggtacataattaaaattgcttacactaaaaataaaaattatgtgtttttggtaaaaggttataaaaaggcatgggaatgtggttttttaagagaaagtaattttgtctagtttagagggtttnaaggatgttttaagttnnaaagaaagaagaataaaactgaaggtttaagcaagttgtagaaggtttgtgaaagattaatcttgtaaaagaaattctgtgtgtgagcaagttggctaaaatttaaagggnattatttagtttttccgtaaattgaacattaaaataaaaagcacactgatgcagggccagaatctgggcccntgtgtcngaataacagggttttcttggagcattgatctgctctttaacagaaaattgtaaagggttataaaaggtttatgaaaatcttaccttatggtcaaactgattaagattggatagatttgtttatnnnaaggttttattaaaattggntttagcattaatacactaatgcaaaggtaaaatttggttttctcttttgaacaagattttcgtgtacctgcagaaaaaagggagagagaagagacagattcagttggcctcatgctgtctttattgggtcttgttgtttggaaagctgagtctcccctctatcaangagtaaaggtttttgnctttnttaaaatntttgaagtnatcattttggctaaataaatgacttatggtgacctgngattctattttgtgatatcaagtgttttaaacctttngatatttgacaaactttccaaaatcaaatttttgacctnattaanctttttagatattaggtcccctgaagtccaaaagagacatattcggcttatttggtatattaaaatcatacaggaagcattgtcaaatataaaatggtgtttaactttctttgggttatatttatatgttattagtatgtgttccaaaattgtatgagattcctataattctgatatgtctcagtatatgttatcagtaataattatgattgttatgttaaattattgtgtgccacagagataaccagatttccttgtcgattgtgtctttaaccgtggctgtcctaagacttttgtcatccacagacaattgttgtcttgttttgatccttttcaaaaggcggtttataatcagctataggactctgacaggtgctcttgaatgcaggtttctgataactttggagattgtgncattggaatagagggaaaaacttccaggactctcatggagagctgatgtgttcatgaatatcgagcagaacaggagttaattgcatggactgaactaatagaagactgaaataatctttttatgactttttgcttgaaacattgctgattctttttgntttgtttttcagagtcaagaaaactttttttccttttgagctatttacagcttttaacaattgagtaaagtatactcctgtgagcaaaatttggagcatatttctttctctctacctgatttctccagaatttggaaactatttgtgagtattcttaatttatggcaatatagttatttgcataagttcaataagaatctgttttcttttgtaacaggacacaattggagacactggttattttaccaaggctttgactggaatggcatgctttcagatataaacagactgctttaaggaatcgaagttgacttatagagccgataaaagccccttgggaaaactggcctcataccttgtctacgcagtccctgtacagggttcctgacctgtggtaagtaaagaatgtcactttctgacaggcccaggagccccaagttatcttgggacctcgagaggagaggaattcacccaattcatacaggtatttgcaggcacagataaatccgtggctgggctcaaggctttaaaaagtctaatctgagattccttatggaacaaagttccagcaaagccaatttaaaaaagagcctatatggcaaataattattcttgctgcactttatgcaaataatcaggccaagtataataagactaaaacttattttgcaaataaattngtcctactatgatttgtctttggtaaaaatgggagactggagagagaaaaattatagtacacctgttattagattctagtcttgtccgttgtttnttgagtttttnnnnnnnnattattttctacaatttggactgaatcctgaattctttccgggctacaagtctccaaactaacgctttcaaatttttcttccatttttctgacttggactcaatgaaattgctactacctttttcctgaggccctgcaagctgaagcttattccttgtgatacaggcgagaaaaacgtgtcagattgccaccgccttcctcctctgtaactaaagatgctttgagtctaacatctggataaattgtgcccaacattaacctttgtttttcttctgtttccatagaaatgcctcttattaaaaatctgtttgccttatatttcagacaacaggagactggttttccagcctattcacttagattccaaatggcatctgatctcttcttataagcattgttaaactgggcttaagcattttattaattatcactgggtgctatttgatttttaaaataattatttgttatattcaacaggggtgcagacggttaaagtttatgtcttccaggcttcaacagttccaagtcaagctaatgatggcccaaggattccaacccgtaccatcccaggagganccgagtccctacaggtcnttagancagtcagtgagagatttccgcgccctccaaggttaggcagggacgacaaccctgttcagcaggaagtagcttcagaagatgagatcttcggccctttctccttaagaataaggagggtgaaatctctcaggggggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 53 8.6 Weakly correlated
2 ZNF43 19 43.0 Highly correlated
3 ZNF382 15 99.0 Weakly correlated
4 ZNF680 12 28.9 Moderately correlated
5 ZNF506 11 28.9 Moderately correlated
6 ZNF766 10 43.0 Highly correlated
7 ZNF679 10 28.9 Moderately correlated
8 ZNF793 9 99.0 Weakly correlated
9 ZNF394 7 99.0 Weakly correlated
10 ZIM3 6 87.0 Weakly correlated
11 ZFP37 5 99.0 Weakly correlated
12 ZNF823 5 43.0 Highly correlated
13 ZNF554 5 99.0 Weakly correlated
14 ZNF534 5 19.6 Weakly correlated
15 ZNF589 4 28.9 Moderately correlated
16 ZNF549 4 87.0 Weakly correlated
17 ZNF705B 4 28.9 Moderately correlated
18 ZNF584 3 99.0 Weakly correlated
19 ZNF85 3 28.9 Moderately correlated
20 ZNF705D 3 28.9 Moderately correlated
21 ZNF324 3 99.0 Weakly correlated
22 ZFP69B 3 99.0 Weakly correlated
23 ZNF263 3 180.0 Weakly correlated
24 ZNF528 2 43.0 Highly correlated
25 ZNF597 2 94.0 Weakly correlated
26 ZNF182 2 99.0 Weakly correlated
27 ZNF169 2 94.0 Weakly correlated
28 ZNF18 2 160.0 Weakly correlated
29 ZNF140 2 99.0 Weakly correlated
30 ZNF101 2 43.0 Highly correlated
31 ZNF479 2 6.4 Weakly correlated
32 ZKSCAN1 2 160.0 Weakly correlated
33 ZNF778 1 74.0 Weakly correlated
34 ZNF735 1 28.9 Moderately correlated
35 ZNF585A 1 99.0 Weakly correlated
36 ZNF723 1 15.2 Weakly correlated
37 ZNF133 1 99.0 Weakly correlated
38 ZNF789 1 99.0 Weakly correlated
39 ZNF701 1 28.9 Moderately correlated
40 ZNF141 1 43.0 Highly correlated
41 ZKSCAN5 1 160.0 Weakly correlated
42 ZNF610 1 28.9 Moderately correlated
43 ZNF845 1 28.9 Moderately correlated
44 ZNF595 1 43.0 Highly correlated
45 ZNF251 1 94.0 Weakly correlated
46 ZNF354C 1 99.0 Weakly correlated
47 ZNF2 1 99.0 Weakly correlated
48 ZNF287 1 99.0 Weakly correlated
49 ZNF282 1 319.0 Weakly correlated
50 ZNF441 1 43.0 Highly correlated
51 ZNF485 1 94.0 Weakly correlated
52 ZNF274 1 99.0 Weakly correlated
53 ZNF519 1 19.6 Weakly correlated
54 ZNF175 1 94.0 Weakly correlated
55 ZNF547 1 74.0 Weakly correlated
56 ZNF197 1 99.0 Weakly correlated
57 ZNF558 1 99.0 Weakly correlated
58 ZNF561 1 43.0 Highly correlated
59 ZNF567 1 99.0 Weakly correlated
60 ZNF317 1 99.0 Weakly correlated
61 ZNF585B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF43 18 43.0 Highly correlated
2 ZNF506 8 28.9 Moderately correlated
3 ZNF793 6 99.0 Weakly correlated
4 ZNF766 4 43.0 Highly correlated
5 ZNF534 4 19.6 Weakly correlated
6 ZIM3 3 87.0 Weakly correlated
7 ZNF85 3 28.9 Moderately correlated
8 ZNF705B 3 28.9 Moderately correlated
9 ZNF680 3 28.9 Moderately correlated
10 ZNF679 2 28.9 Moderately correlated
11 ZNF486 2 8.6 Weakly correlated
12 ZNF705D 1 28.9 Moderately correlated
13 ZNF701 1 28.9 Moderately correlated
14 ZNF354C 1 99.0 Weakly correlated
15 ZNF567 1 99.0 Weakly correlated
16 ZNF382 1 99.0 Weakly correlated
17 ZNF595 1 43.0 Highly correlated
18 ZNF287 1 99.0 Weakly correlated
19 ZNF789 1 99.0 Weakly correlated
20 ZNF528 1 43.0 Highly correlated
21 ZNF479 1 6.4 Weakly correlated
22 ZNF597 1 94.0 Weakly correlated
23 ZNF282 1 319.0 Weakly correlated
24 ZNF585B 1 99.0 Weakly correlated
25 ZNF251 1 94.0 Weakly correlated
26 ZNF169 1 94.0 Weakly correlated
27 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF506 28.9 Moderately correlated
2 ZNF793 99.0 Weakly correlated