ZRdb KZFP & Repeats
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LTR_HERV3

  • Name
    HERV3
  • Repbase
    HERV3
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000169
Description :

The associated LTR is LTR4.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tttctggcgagccagccaggagtggagacgacaggtttgctgtctcctttgcctgtgggnctggagccccgggccgggggagacctgtgaccccaggcgccgcctgggagaacttcagcccggaggggagatcggctctcccgtgacccggcgcccctncccggcagcgcaacggaacctaaggggctacaggacgattccaggaacagcgcgctncaggaccgcggtaaggtttggggcccaaggcaggacccgtcccataaggacggaaggggagcctgatcacctcccggggtgtanctagtagtccgacccaggagctgggggcggcgagagtggctcgccaattcggatgaaacttacaccccaaccaagaanaggaactgggagtggggaagtgtgtgaatgcgtgtgaaagaggcggttccaggaggagccaatgcggggagtgacgtgtggggccgcaggtctcttagcgtggaccgtacgctccgagcgaagtgtggggccgaccgggactagtggcgaacgtcctccgnnnccgccgcatacggctnagggaggcgccccacaactcagtgattgtggtggtccgggttcggggntnatacgaaccctccantaaagctaagcggcgtctgaaaactcccgtaagggagacggtctaatcggtctgaagcgaaagtaaaagagtgagtgtgttgcgccgtaactgggaggaaatgggagggaagtcgtcaaaacccaccccattggaatgcatgttaaagaactttaagaaaggttntgcaggggattatggagtcaagttgaccccccagaggttgagaactctctgtgaattagaatggccctcttttggtgtcggatggccggccgaaggaactatagatagggaaacaattggccgtgtatttaaggtggtgacnggggtcggaggacagccagggcacccagaccaatttccttatattgactcatggctaaatatagtncagacncgaccagcatggntncagccctgcctagcggcttattgcaaaacgctcgtggctcgagccgagccnaaagtgaaagaaaaatcagcttcgccggcagccacggagntaaagggaaagccacaggaaggcaagagaagccagttttgcaggagccgccagaggaaacagaaattcctcctccntatgtcccagcctacccccctttaccgaggccaacggcccccgaggagccagattcaggngntaacacgccccaggtctcaccccgaagggaaggatcggagcctcgggaggccaaggagggaagtcaagatagtcaagcgggccgcctcngatctggccgcgcccgagctatgcaaatgcctctcagggagacgcgaggacccgtctattatgatgancagggccangtccaaggggggcaacggactttcatctaccagcccttttcaaccactgatctcctaaactggaaacaccatactccctcctacacggagaagccccaggccctcatagatctgatgcagtccatctttctgacacacaatccaacctggccagactgcaagcagctcctcctgacgctgtttaacaccgaggagcgccggagggtgacccaggcagccctccgctggctagaagccaatgcgccagaaggcgcanttaatgcccaggcatacgctcagggccagttcccagaagcagaccccnactgggacccagatgatgcaacccagcttcagcgtctgcagaggtaccgagaggcactcctgcaagggctaagaganggcggaaaaaaggcaatcaatataggaaagatctcagaggtgcttcagggagctgacgagagcccnagccagttttatgagagactctgtgaggcattccggctttacaccccgtttgaccctgaggctgctgaaaatcagcgcatggtgaatacggcatttgtagggcaagcccagggtgacatcaggcggaagctgcagaagctagaaggtttcgcaggcatgaatgccacccagcttatagaagtggccaccaaggtgtacgttaaccgtgaccaggaggcaaaaagggaagctgatcggaggcttaggaaaaaggccgatctgctggcggcagccctcacggaaagggaagctagcatcgcgaggggacgcggacgcggacgcggacgtggaaggggccaagctgggcagagacccgagagccggccgaggctaganagggatcaatgtgcgcggtgcaaaaagaagggacactggaaggatgagtgtccagagggcaatgaaggaaatggccaaggccgtgagacgagaaggccgccggccaagggctgccgcaccctgggggaaccagacaccgacctgatcgggctggcaggggctgaaggatatgaggactaggacagaccgggctccntctccttaggcccccaggagcccatggtcacattagaagtngggggccaactgatggactttatggtagacaccggggctgaacactcggtagtgacccggcccatagggccactatccaagaactatacaactattgtnggggctacnggggtcccagagaagaggccattctgccggccaaggaggtgtgtcataggaggacgagaagtccaacatgaattcctatacctcccaaattgcccagttcccttgctgggaagagacctactccaaaaactgcaagcacagattgcttttgggccgcaaggggatatgactttaaacctgactcacccaaaggccatggtgttaacccttaccgtcccgcaggctgaggaatggagactatacgcaaaanagncgccagaaccgggantaaatgaantgtntgggctacttagtaaaattcctggagtatgggctgaagataacccacccgggctggctgtaaatcaggcaccggtggtagtagagctaaaaccgggagcaactccggttcgggttcgccagtacccgcttccccgagaggccgtacggggcattcgcaaacacttagagcggctctncaaacacggaatcttagtccgatgccagtcaccctggaacactccactcttgccagtacggaagccagggtctggtgaatataggccggtgcaggacttgcgtgctgtaaaccaggccacggtgaccatccacccggtggtaccaaacccgtatactttaatgggactcattccggcaagtgccgcctggtttacnngcctagacttaaaggatgcnttcttctgtctccgcctggcaccaattagtcagcccatctttgcatttcaatgggacgattnagtcacaggcacagnggngcagctcacctggactagactcccacaagggttcaaaaactctcccacaatctttggagaagcactggcctcagacctcaaggcctacaccccgccaaatgacaactgcgccttgctncagtacgtagacgaccttcttctggcagccccaacccgagaggactgctaccaaggaacccaagacctcctccacctcctgtggaaggcaggntataaagtgtccaggaagaaggctcaaatctgccnngaaagngtcaagtatttaggcttcatagtaagccaaggggaacgncggcttggcagtgaacgaaagcaggctgtttgtgcacttccnactccaaccacccggcgtcaaataagagagttcttaggggcagcagggttctgccgcatctggatcccaaatttctcgctnatggctaagccattatatgaagccacaaagaggggggaaaaggagcccctcctctgggaggccgaccaggagaaggcntttaaacaaatcaaagaagccttaactcaggccccagccttaggactgccagatntaactaagcctttctttctgtatgtccacgagcgaaagggaatggctataggggtcctgactcaagtcataggatcatggcatcgcccggtggcgtacttatccaggcaattggactccgtggcgctnggatggcctccttgccttaaggcactagctgccaccgccctactggcacaagaagctaacaaactgactctaggacagcaactgaccatccgggtacgccgcactcggttataactttaatggaccagagagggcaccattggttatcaaatccgagaatgactcggtaccaggggctcctatgcgaaaatccccgcataactttagaaacngtgaacaccctnaacccggctaccttgctcccgatcgaaccgggagncccccttcatnactgtgtgganacggtagatgaggtgttctcaagccggagagatctnacagaccggcccctcggggacccggacgttgaatacttcacagatggaagcagtttcgtactagaaggggtccgccgagccgggtatgcagtggtgacnttggactcagtggtagaggcncagcctctgcctaccggaacntcngcccagaaggcagagctaatagccctgacaagagctcttttgctagcaaaagacaaaaaggtcaatatttacacngattccaaatatgcttttgccacnttgcatgttcatggggctatatacaaagaaagaggactcttaactgcggagggaaaaagaaataaagtacaaggaagaaattctacagctcttagatgctgtatgggccccaaagaaggtggctgtnatgcactgcagggggcaccaaaaggcaggaacactagaggccaaaggaaacagaaaggcagacagggaggcaaagcgggcagcaatgactactccgcattctaaagaggaagccctagctatgcctctcctcccggagnctcccctcccggagatcccaagttacnctccaaatgaaagggcctggtttgcccaagaanctggaaantacattgaaggaggatggtggaaattctccgatgggaggctagccatncctgaaatggtggcccccaaatttgtaaaacaattccaccaaggaactcacatgggaaaaacggcactagaaacgctactaggacgccatttctatgtgccacggctcactgccatcactcgagccgtttgcgaacaatgtctaacttgtgcccagaacaacccacgacaagggcccactcggccccccgggaattcaggaaataggagccacgccctgtgaaaacctgcttatggacttcaccgaactgccccgagcngggggctatcggtacatgctggtgctcgtttgcaccttttcaggatgggtcgaggctttccccaccaggacagagaaagcacgagaagtgactaaagtactgttaagagacattatccccagatttggactgcctctaactctagggtcagacaatggaccggcatttgtagctgaaatagttcagganctaacacggctgttaaaaataaaatggaagttacacacagcctaccggccgcagagctcaggaaaagtggagcgcatgaaccggacactcaagcagctactgaagaaatattgccaggaaactcatctgagatgggatcaggtcttgcccatggtcctcctccgagtcaggtgcacccccaccaaacaaactgggtattcgccctatgagattttgttcggccggccacccccaatcataggtcaaattaaaggtgatctccgngaactaggggaattaaccttaagaaggcaaatgcaggctttagggatagccatgcaaaangtccatggctgggtacgggaaagaatgcctataagcctgacagacccagcacacccctttaaacctggggactctgtttaggttaagaaatggaatccaaccactctaggacccatatgggatgggccccatactgtaatcttgtccactcccactgctgttaaagttgcaggnatcgtgccttggatccaccacagtcggctgaaaccggcagcccaggacaagtggaccagccagcaggacccagaccatccgacccggctgatcctgcgacgagaccgagttgccgctgagagacgacgacagccctgctctggtcactccggaagctgaccagtctacgcacggctgaagcttgaggagacaacagccctgctctagtcaccccggaagctgactagtctacgcacggccgaagcttgagtantcatcaagnaagtaaatgtggttagaaatcttaagnccagtagttttccttgtaatactaattgttttactattgttctgtcgctttgctcaacctcctcccccgggtaaagacctcttctgtccntgctgggtataaanatgctactctttacttnnttgttccggcgnncgnngctacnnntttcctcctnattatgncactccccttanccgtgtcagaagaagagcccatagaagggtgcccccactgcacncacactacntggtcagggagcacnataactagaaccctgttgtaccatacttattatgagtgtacagggacccgcctaggaacttgtactcacaaccagacgacctactcagtctgtgacccaggaaatggccagccttatatatgttatgaccccaagtccttacctgggacctggtttgaaattcatgtgggtcaaaagaaggaaaccttctaaaccaaaccaaggtctctccctcccacgggggggctatntccttgtactttgatgtttgccagntaacatccatgggctcaacctttcccgtaatctctagttccgnagagtactatagnagctgccacaaaaatatatgcgcaccccctgcttgctccgccaggtccccagaaacagcttgctgggactgcacaatcggtccnctgacccgcaatcaccggggccagtcatgcttaccaaaatgccagcaaaaccagattgtaagacaagcacttgcaatcctgtaaatctcaccatcttaaagccggatctgcccatatggactacaggtttannngcaccccgggantacaagtcagcggtcagaaaacngacccagaagcctatttatatattatcaagaaanctcggacccgtccgcccganaattccagtctttaagtcattctntgagcatatnaaccagaagttgccngagccccctcctttgccagaaacctattcgncgcgnnncgtttgcntgctcagctggctgaaaacatngccggcagcctaggcgtctcctcatgttatgtttgtggagggaccaacatgggagaccaatggccntgggaagcaaaagagttaatgccccaagataacttcactctactgnctcttcccccgaaccgacgcccacaagttcgagcgtctggctcttaaaaacctctattatcgggagatnctgcgttgctcgctggggaaaagcctttacagacccagtaggagaattaacctgcctaggacagcaatattacaatgaaacactaggaaaaactttatggcggggcaaaaataattccaaatcgccccanccaagcccattctcccgtttcccttctttaaaccactcttggtaccaacttgaagctccaaatacctggcaggcgccctctggcctctactggatctgtgggccacgggcatatcggcagttgccggctaaatggacaggggcctgtgtactnggaacaattaggccgtctttcttcctaatcccnctgnaacagggagaagctttagggtaccccgtctatgatgaaactaaaaggagaaacaaaaagagacataaccataggaaattggaaagacaatnaatggccccctgaaagaataatccaatactatgggccagccacctgggcagaagatgggncgtggggataccgcacccctatttacatgctcaaccgcatcataaggttgcaggcagtgcttgaaatcatcactaatganacngcaaangccttagatctgctggcccagcaagccacaaaaatgaggaacgctatctatcaaaatagactggctttagactacctcctagcccaggaaggaggagtatgtggaaagttcaatctaactaattgctgcctagaaatcgatgacaacggaaaggccattangganataactgcaagaatncgaaaattagcccatgttccagtccagacttggaaagggtggtctccagattccctcttcggaggctggttttcatccttcggaggattcaagaccttaataggagtagttctggccatactaggagnctgcctaatactcccttgtctcttacccctccttgttagaagcattcaatcagccatagaggcnnttgtagccaggcaaactaccactcagctaatggctctaactaaatatcaacctttgccaaangaagaaaactgcctcttcatgaagaattaagtaatagtgatgctttctattaaacttcatttataaaaagcatcaaaggggggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 22 99.0 Weakly correlated
2 ZNF723 21 15.2 Moderately correlated
3 ZNF766 19 43.0 Weakly correlated
4 ZNF701 16 28.9 Highly correlated
5 ZNF845 13 28.9 Highly correlated
6 ZNF534 10 19.6 Moderately correlated
7 ZNF506 8 28.9 Highly correlated
8 ZNF554 8 99.0 Weakly correlated
9 ZNF175 7 94.0 Weakly correlated
10 ZNF680 6 28.9 Highly correlated
11 ZNF317 6 99.0 Weakly correlated
12 ZKSCAN8 6 160.0 Weakly correlated
13 ZKSCAN1 6 160.0 Weakly correlated
14 ZNF320 5 28.9 Highly correlated
15 ZFP57 5 87.0 Weakly correlated
16 ZNF257 5 0.0 Weakly correlated
17 ZNF30 5 94.0 Weakly correlated
18 ZNF547 5 74.0 Weakly correlated
19 ZNF549 4 87.0 Weakly correlated
20 ZNF324 4 99.0 Weakly correlated
21 ZNF589 4 28.9 Highly correlated
22 ZNF597 4 94.0 Weakly correlated
23 ZNF394 4 99.0 Weakly correlated
24 ZNF18 4 160.0 Weakly correlated
25 ZNF197 4 99.0 Weakly correlated
26 ZNF263 4 180.0 Weakly correlated
27 ZNF479 3 6.4 Weakly correlated
28 ZNF610 3 28.9 Highly correlated
29 ZNF682 3 28.9 Highly correlated
30 ZNF558 3 99.0 Weakly correlated
31 ZNF528 3 43.0 Weakly correlated
32 ZNF101 3 43.0 Weakly correlated
33 ZNF425 3 94.0 Weakly correlated
34 ZFP37 3 99.0 Weakly correlated
35 ZIM3 3 87.0 Weakly correlated
36 ZNF331 3 94.0 Weakly correlated
37 ZNF816 3 28.9 Highly correlated
38 ZNF184 2 99.0 Weakly correlated
39 ZNF8 2 99.0 Weakly correlated
40 ZFP69B 2 99.0 Weakly correlated
41 ZNF584 2 99.0 Weakly correlated
42 ZNF274 2 99.0 Weakly correlated
43 ZNF28 2 28.9 Highly correlated
44 ZNF793 2 99.0 Weakly correlated
45 ZNF33A 2 99.0 Weakly correlated
46 ZNF34 2 99.0 Weakly correlated
47 ZNF114 1 28.9 Highly correlated
48 ZNF182 1 99.0 Weakly correlated
49 ZNF695 1 28.9 Highly correlated
50 ZNF75D 1 94.0 Weakly correlated
51 ZNF135 1 94.0 Weakly correlated
52 ZNF677 1 99.0 Weakly correlated
53 ZNF669 1 43.0 Weakly correlated
54 ZNF765 1 8.6 Weakly correlated
55 ZNF140 1 99.0 Weakly correlated
56 ZNF17 1 69.0 Weakly correlated
57 ZNF587 1 28.9 Highly correlated
58 ZNF586 1 43.0 Weakly correlated
59 ZNF585B 1 99.0 Weakly correlated
60 ZNF202 1 160.0 Weakly correlated
61 ZNF486 1 8.6 Weakly correlated
62 ZNF419 1 28.9 Highly correlated
63 ZNF417 1 28.9 Highly correlated
64 ZNF37A 1 99.0 Weakly correlated
65 ZNF267 1 43.0 Weakly correlated
66 ZNF273 1 28.9 Highly correlated
67 ZNF284 1 43.0 Weakly correlated
68 ZNF2 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 18 15.2 Moderately correlated
2 ZNF506 8 28.9 Highly correlated
3 ZNF534 7 19.6 Moderately correlated
4 ZNF263 2 180.0 Weakly correlated
5 ZNF680 2 28.9 Highly correlated
6 ZNF597 2 94.0 Weakly correlated
7 ZNF701 2 28.9 Highly correlated
8 ZIM3 1 87.0 Weakly correlated
9 ZKSCAN8 1 160.0 Weakly correlated
10 ZNF257 1 0.0 Weakly correlated
11 ZNF267 1 43.0 Weakly correlated
12 ZNF382 1 99.0 Weakly correlated
13 ZNF75D 1 94.0 Weakly correlated
14 ZNF554 1 99.0 Weakly correlated
15 ZNF18 1 160.0 Weakly correlated
16 ZNF33A 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF506 28.9 Highly correlated
2 ZNF723 15.2 Moderately correlated