ZRdb KZFP & Repeats
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LTR_HERV17

  • Name
    HERV17
  • Repbase
    HERV17
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000628
Description :

LTRs of the class I HERV17 (aka HERV-W) are listed as LTR17 sequences.HERV17 is related to HERV9/pHE1 and was relatively recently (<20 Mya)active as copies of the younger subfamilies are < 6% diverged from theconsensus (primarily at CpG sites). This contains ORFs at the followingapproximate positions: 1938-3143 (gag), 3670-6912 (pol) and 6940-8568(env). A copy of the latter has been exapted as the human syncytingene.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttttggcgaccacgaagggacctccaaagcggtgagtaatattggaccactttcgcttgctattctgtcctatccttccttagaattggaggaaaataccgggcacctgtcggccagttaaaaacgattagcgtggccgccggacttaagactcaggtgtgaggctgtctggggaagggctttctaacaacccccaacccttctgggttgggagcgttggtctgcctggaaccagcttccactttcaattttcctggggaagccgagggccgactagaggcagaaagctgtcgtcccgaactcccggcattagccggttgagatcatggcgcagccagaagtctctactcaacagtcgcccatgcgtgcgcccctacctttccttctgacccatacctcctgggtcccgaccacgactttcttgaaagtgtagccccaaaattctccttacctctgaatctacttcctccgatccctgcctcctaggtactaatggttcagactttcatttcctctagcaagttgtatctccaaagggatctaaggaagctctacgctgcgtccttaggcacctaggctatgaacccagggagtcttgtccctggtgtccctcccgatttaggtatacagctctcgacatgggcagttatgtgggacccgttccccaccacccttgccagggccccaagtttgtaaatggctaagagaaaagagagacagaggagagagagagagacggaggagagagagagagagacagagaggagagagagacaggagagagacggaagagagagagagacagagaggagagagagagagtcaaagagagaaagaaagaganagaaatagtaaagaaaaaacagtgtgccctattcctttaaaagccagggtaaatttaaaacctataattgataattgaaggtcttctccgtgaccctataacactccaatactaccttgttgtcagtgtaaacaagggcgtagcccgaaaacactgagaccactgacaacccgtagccttcctatcaaaaatccttaacccagtaacccgcggatggcccaaatgcattcaatctgtagcggcaactgctttgctaacagaagaaagtagaaaagtaacttttagaggaaacctcattgtgagcacacctcaccagttcagaattattctaagtcaaaaaagcaaaaaggtagcttactaactcaaaaatcttaaagtatggggctattctgttagaaaaaggtgatttaacactaaccactganaattcccttaacccagcagatttcctaacaggggatttaaatcttaattaccatacaaaggtccgaccagacctaggaggaactcccttcaggacaggacgatagatggttcctcccaggtgattgaggaaaaaaaccacaatgggtattcagtaattgatagggagactcttgtggaagcagagttaggaaaattgcctaataattggtctgctcaaacgtgcgagctgtttgcactcagccaagccttaaagtacttacagaatcaaaagactatctcaatcctgactcaaaaggttacctacaccctctctgaaacgaatttgcataagaactgttgtttatgggaatgcatcttgatggggcagctgggttgttatgaaatactcaggaacccagcccagctctaggactcacccctgagcgcaaaggcaatgttgggcacgctggtaaaggaccactagaatccagcagcccggacccctttctttgtggtcaagaaaggcgggaaaacgggtgcaggactgctacatcggtgagcgtaactaatccgataagcagaggtccatgggtggttacgcaccctggaaaggaataagcattaggaccatagaggacgctctaggactaatgctcatcggaaaatgactaggggtgctggcatccctatgttcttttttcagatgggaaacgttccccccaaggcaaaaacgcccctaagatgtattctggagaattgggaccaatttgaccctcagacgctaagaaagaaacgacttatattcttctgcagtaccgcctggccacgatatcctcttcaagggggagaaacctggcctcctgagggaagtataaattataacaccatcttacagctagacctcttttgtagaaaagaaggcaaatggagtgaagtgccatatgtacaaactttcttttcattaagagacaactcgcaattatgtaaaaagtgtgatttatgccctacaggaagccctcagagtctacctccctaccccagcgtccccccgactccttccccaactaataaggaccccccttcaacccaaacggtccaaaaggagatagacaaaggggtaaacaatgaaccaaagagtgccaatattccccgattatgccccctccaagcagtgggaggaggagaattcggcccagccagagtgcatgtacctttttccctctcagacttgaagcaaattaaaatagacctaggtaaattctcagataaccctgatggctatattgatgttttacaagggttaggacaatcctttgatctgacatggagagatataatgttactgctagatcagacactaaccccaaatgagagaagtgccgccataactgcagcccgagagtttggcgatctctggtatctcagtcaggtcaatgataggatgacaacagaggaaagagaacgattccccacaggccagcaggcagttcccagtgtagaccctcactgggacgcagaatcagaacatggagattggtgccgcagacatttgctaacttgcgtgctagaaggactaaggaaaactaggaagaagcctatgaattattcaatgatgtccactataacacagggaaaggaagaaaatcctactgcctttctggagagactaagggaggcattgaggaagcatacctctctgtcacctgactctattgaaggccaactaatcttaaaggataagtttatcactcagtcagctgcagacattagaaaaaaacttcaaaagtccgccttaggcccggagcaaaacttagaaaccctattgaacttggcaacctcggttttttataatagagatcaggaggagcaggcggaacgggacaaacgggattaaaaaaaaggccaccgctttagtcatggccctcaggcaagcggactttggaggctctggaaaagggaaaggctgggcaaatcgaatgcctaatagggcttgcttccagtgcggtctacaaggacactttaaaaaagattgtccgaatagaaataagccgccccctcgtccatgccccttatgtcaagggaatcactggaaggcccactgccccaggggacgaaggtcctctgagtcagaagccactaaccagatgatccagcagcaggactgagggtgcccggggcaagcgccagcccatgccatcaccctcacagagccccgggtatgcttgaccattgagggccaggaggttaactgtctcctggacactggcgcggccttctcagtcttactctcctgtcccggacaactgtcctccagatctgtcactatccgaggggtcctaggacagccagtcactagatacttctcccagccactaagttgtgactggggaactttactcttttcacatgcttttctaattatgcctgaaagccccactcccttgttagggagagacattctagcaaaagcaggggccattatacacctgaacataggagaaggaacacccgtttgttgtcccctgcttgaggaaggaattaatcctgaagtctgggcaacagaaggacaatatggacgagcaaagaatgcccgtcctgttcaagttaaactaaaggattccgcctcctttccctaccaaaggcagtacccccttagacccgaggcccaacaaggactccaaaagattgttaaggacctaaaagcccaaggcctagtaaaaccatgcaatagcccctgcaatactccaattttaggagtacagaaacccaacggacagtggaggttagtgcaagatctcaggattatcaatgaggccgttgtccctctatacccagctgtacctaacccttatactctgctttcccaaataccagaggaagcagagtggtttacagtcctggaccttaaggatgcctttttctgcatccctgtacatcctgactctcaattcttgtttgcctttgaagatccttcgaacccaacgtctcaactcacctggactgttttaccccaagggttcagggatagcccccatctatttggccaggcattagcccaagacttgagccagttctcatacctggacactcttgtccttcggtacgtggatgatttacttttagccgcccgttcagaaaccttgtgccatcaagccacccaagcgctcttaaatttcctcgccacctgtggctacaaggtttccaaaccaaaggctcagctctgctcacagcaggttaaatacttagggctaaaattatccaaaggcaccagggccctcagtgaggaacgtatccagcctatactggcttatcctcatcccaaaaccctaaagcaactaagagggttccttggcataacaggcttctgccgaatatggattcccaggtacggcgaaatagccaggccattatatacactaattaaggaaactcagaaagccaatacccatttagtaagatggacacctgaagcagaagcggctttccaggccctaaagaaggccctaacccaagccccagtgttaagcttgccaacggggcaagacttttctttatatgtcacagaaaaaacaggaatagctctaggagtccttacacaggtccgagggacgagcttgcaacccgtggcatacctgagtaaggaaattgatgtagtggcaaagggttggcctcattgtttacgggtagtggcggcagtagcagtcttagtatctgaagcagttaaaataatacagggaagagatcttactgtgtggacatctcatgatgtgaacggcatactcactgctaaaggagacttgtggctgtcagacaaccgtttacttaaatatcaggctctattacttgaagggccagtgctgcgactgcgcacttgtgcaactcttaacccagccacatttcttccagacaatgaagaaaagatagaacataactgtcaacaagtaattgctcaaacctacgccgctcgaggggaccttctagaggttcccttgactgatcccgacctcaacttgtatactgatggaagttcctttgtagaaaaaggacttcgaaaagcggggtatgcagtggtcagtgataatggaatacttgaaagtaatcccctcactccaggaactagcgctcagctggcagaactaatagccctcactcgggcactagaattaggagaaggaaaaagggtaaatatatatacagactctaagtatgcttacctagtcctccatgcccacgcagcaatatggagagaaagggaattcctaacttccgagggaacacctatcaaacatcaggaagccattaggagattattattggctgtacagaaacctaaagaggtggcagtcttacactgccggggtcatcagaaaggaaaggaaagggaaatagaagggaaccgccaagcggatattgaagccaaaagagccgcaaggcgggaccctccattagaaatgcttatagaaggacccctagtatggggtaatcccctccgggaaaccaagccccagtactcagcagaagaaatagaatggggaacctcacgaggacatagtttcctcccctcaggatggctagccaccgaagaaggaaaaatacttttgcctgcagctaaccaatggaaattacttaaaacccttcaccaaacctttcacttaggcattgatagcacccatcagatggccaaatcattatttactggaccaggccttttcaaaactatcaagcagatagtcagggcctgtgaagtgtgccaaagaaataatcccctgccttatcgccaagctccttcaggagaacaaagaacaggccattacccaggagaagactggcaactagattttacccacatgcccaaatctcagggatttcagtatctactagtctgggtagatactttcactggttgggcggaggccttcccttgtaggacagaaaaggcccaagaggtaataaaggcactaattcatgaaataattcccagattcggacttccccgaggcttacagagtgacaatggccccgctttcaaggctgcagtaacccagggagtatcccaggcgttaggcatacaatatcacttacactgcgcctggaggccacaatcctcaggaaaagtcgagaaaatgaacgaaacactcaaacgacatctaaaaaagctaacccaagaaacccacctcgcatggcctgctctgttgcctatagccttactaagaatccgaaactctccccaaaaagcgggacttagcccatacgaaatgctgtatggacggcccttcctaaccaatgaccttgtgcttgaccgagagacggccaacttagttgcagacatcacctccttagccaaatatcaacaagttcttaaaacattacagggaacctgtccccgagaggagggaaaggaattattccaccctggtgacatggtattagtcaagtcccttccctctaattccccatccctagatacatcctgggaaggaccctacccagtcattttatctaccccaaccgcggttaaagtggctggagtggagtcttggatacatcacactcgagtcaaaccctggatactgccaaaggaacccgaaaatccaggagacaacgctagctattcctgtgaacctctagaggatctgcgcctgctcttcaagcgacaaccgtgaggaaagtaactagaatcgtagatccccatggccctcccttgtcatatttttctctttactgttctcttaccccctttcactctcactgcaccccctccatgccgctgtactaccagtagctccccttaccaagagcttctatggagaatgcggcttcccggaaatattgatgccccatcgtataggagtttttctaaaggaaaccccactttcaccgcccacacccatatgccccgcaactgctataactctgccactctttgcatgcatgcaaatactcattattggacagggaaaatgattaatcctagttgtcctggaggacttggagccactgtctgttggacttacttcacccataccggtatgtctgatgggggtggagttcaagatcaggcaagagaaaaacacgtaaaggaagtaatctcccaactgacccgggtacatagcacccctagcccctacaaaggactagatctctcaaaactacatgaaaccctccgtacccatactcgcctggtaagcctatttaataccaccctcactgggctccatgaggtctcggcccaaaaccctactaactgttggatgtgcctccccctgcacttcaggccatacatttcaatccctgtatctgaacaatggaacaacttcagcacagaaataaacaccacttccgttttagtaggacctcttgtttccaatctggaaataacccatacctcaaacctcacctgtgtaaaatttagcaatactatagacacaaccaactcccaatgcatcaggtgggtaactcctcccacacgaatagtctgcctaccctcaggaatattttttgtctgtggtacctcagcctatcgttgtttgaatggctcttcagaatctatgtgcttcctctcattcttagtgccccctatgaccatctacactgaacaagatttatacaatcatgtcgtacctaagccccgcaacaaaagagtacccattcttccttttgttatcggagcaggagtgctaggcggactaggtactggcattggcggtatcacaacctctactcagttctactacaaactatctcaagaactaaatggtgacatggaacgggtcgccgactccctggtcaccttgcaagatcaacttaactccctagcagcagtagtccttcaaaatcgaagagctttagacttgctaaccgccgaaagagggggaacctgtttatttttaggggaagaatgctgttattatgttaatcaatccggaatcgtcaccgagaaagttaaagaaattcgagatcgaatacaacgtagagcagaggagcttcaaaacaccggaccctggggcctcctcagccaatggatgccctggattctccccttcttaggacctctagcagctataatattgttactcctctttggaccctgtatctttaacctccttgttaagtttgtctcttccagaatcgaagctgtaaaactacaaatcgttcttcaaatggagccccagatgcagtccatgactaagatctaccgcggacccctggaccggcctgctagcccatgctccgatgttaatgacatcgaaggcacccctcccgaggaaatctcaactgcacgacccctactacgccccaattcagcaggaagcagttagagcggtcgtcggccaacctccccaacagcacttgggttttcctgttgagaggggggac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 123 99.0 Weakly correlated
2 ZNF669 100 43.0 Weakly correlated
3 ZNF723 62 15.2 Moderately correlated
4 ZNF382 31 99.0 Weakly correlated
5 ZNF728 27 19.6 Moderately correlated
6 ZNF766 27 43.0 Weakly correlated
7 ZNF202 22 160.0 Weakly correlated
8 ZNF479 22 6.4 Weakly correlated
9 ZNF701 19 28.9 Highly correlated
10 ZNF320 17 28.9 Highly correlated
11 ZNF680 17 28.9 Highly correlated
12 ZNF169 16 94.0 Weakly correlated
13 ZKSCAN1 15 160.0 Weakly correlated
14 ZNF2 15 99.0 Weakly correlated
15 ZNF418 15 43.0 Weakly correlated
16 ZFP69B 13 99.0 Weakly correlated
17 ZNF175 12 94.0 Weakly correlated
18 ZNF251 12 94.0 Weakly correlated
19 ZFP37 11 99.0 Weakly correlated
20 ZNF705B 11 28.9 Highly correlated
21 ZNF197 10 99.0 Weakly correlated
22 ZNF324 10 99.0 Weakly correlated
23 ZNF534 10 19.6 Moderately correlated
24 ZNF589 10 28.9 Highly correlated
25 ZNF792 10 94.0 Weakly correlated
26 ZNF18 9 160.0 Weakly correlated
27 ZNF28 9 28.9 Highly correlated
28 ZFP57 8 87.0 Weakly correlated
29 ZNF394 8 99.0 Weakly correlated
30 ZNF641 8 99.0 Weakly correlated
31 ZNF707 8 74.0 Weakly correlated
32 ZNF101 7 43.0 Weakly correlated
33 ZNF547 7 74.0 Weakly correlated
34 ZNF679 7 28.9 Highly correlated
35 ZNF317 6 99.0 Weakly correlated
36 ZNF596 6 94.0 Weakly correlated
37 ZNF610 6 28.9 Highly correlated
38 ZNF354C 5 99.0 Weakly correlated
39 ZNF519 5 19.6 Moderately correlated
40 ZNF558 5 99.0 Weakly correlated
41 ZNF597 5 94.0 Weakly correlated
42 ZNF705D 5 28.9 Highly correlated
43 ZNF140 4 99.0 Weakly correlated
44 ZNF264 4 99.0 Weakly correlated
45 ZNF486 4 8.6 Weakly correlated
46 ZNF585B 4 99.0 Weakly correlated
47 ZNF716 4 19.6 Moderately correlated
48 ZNF823 4 43.0 Weakly correlated
49 ZNF8 4 99.0 Weakly correlated
50 ZKSCAN8 3 160.0 Weakly correlated
51 ZNF212 3 160.0 Weakly correlated
52 ZNF445 3 99.0 Weakly correlated
53 ZNF487 3 28.9 Highly correlated
54 ZNF554 3 99.0 Weakly correlated
55 ZNF658 3 99.0 Weakly correlated
56 ZNF735 3 28.9 Highly correlated
57 ZNF75D 3 94.0 Weakly correlated
58 ZNF182 2 99.0 Weakly correlated
59 ZNF274 2 99.0 Weakly correlated
60 ZNF300 2 99.0 Weakly correlated
61 ZNF43 2 43.0 Weakly correlated
62 ZNF471 2 94.0 Weakly correlated
63 ZNF584 2 99.0 Weakly correlated
64 ZNF677 2 99.0 Weakly correlated
65 ZFP30 1 99.0 Weakly correlated
66 ZKSCAN4 1 99.0 Weakly correlated
67 ZNF124 1 43.0 Weakly correlated
68 ZNF141 1 43.0 Weakly correlated
69 ZNF157 1 99.0 Weakly correlated
70 ZNF195 1 28.9 Highly correlated
71 ZNF221 1 74.0 Weakly correlated
72 ZNF230 1 28.9 Highly correlated
73 ZNF253 1 19.6 Moderately correlated
74 ZNF268 1 94.0 Weakly correlated
75 ZNF331 1 94.0 Weakly correlated
76 ZNF334 1 99.0 Weakly correlated
77 ZNF416 1 43.0 Weakly correlated
78 ZNF420 1 94.0 Weakly correlated
79 ZNF426 1 87.0 Weakly correlated
80 ZNF429 1 28.9 Highly correlated
81 ZNF441 1 43.0 Weakly correlated
82 ZNF443 1 19.6 Moderately correlated
83 ZNF446 1 94.0 Weakly correlated
84 ZNF468 1 28.9 Highly correlated
85 ZNF473 1 43.0 Weakly correlated
86 ZNF483 1 99.0 Weakly correlated
87 ZNF490 1 43.0 Weakly correlated
88 ZNF506 1 28.9 Highly correlated
89 ZNF510 1 99.0 Weakly correlated
90 ZNF514 1 94.0 Weakly correlated
91 ZNF530 1 28.9 Highly correlated
92 ZNF544 1 0.0 Weakly correlated
93 ZNF569 1 99.0 Weakly correlated
94 ZNF578 1 15.2 Moderately correlated
95 ZNF583 1 99.0 Weakly correlated
96 ZNF607 1 43.0 Weakly correlated
97 ZNF688 1 160.0 Weakly correlated
98 ZNF717 1 0.0 Weakly correlated
99 ZNF726 1 28.9 Highly correlated
100 ZNF729 1 8.6 Weakly correlated
101 ZNF765 1 8.6 Weakly correlated
102 ZNF77 1 87.0 Weakly correlated
103 ZNF829 1 99.0 Weakly correlated
104 ZNF845 1 28.9 Highly correlated
105 ZNF850 1 28.9 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 68 99.0 Weakly correlated
2 ZNF669 62 43.0 Weakly correlated
3 ZNF723 59 15.2 Moderately correlated
4 ZNF169 11 94.0 Weakly correlated
5 ZNF534 7 19.6 Moderately correlated
6 ZNF596 6 94.0 Weakly correlated
7 ZNF479 6 6.4 Weakly correlated
8 ZNF320 5 28.9 Highly correlated
9 ZNF705B 5 28.9 Highly correlated
10 ZNF701 4 28.9 Highly correlated
11 ZNF823 4 43.0 Weakly correlated
12 ZNF212 3 160.0 Weakly correlated
13 ZNF28 3 28.9 Highly correlated
14 ZNF597 3 94.0 Weakly correlated
15 ZNF680 3 28.9 Highly correlated
16 ZNF705D 3 28.9 Highly correlated
17 ZNF766 3 43.0 Weakly correlated
18 ZNF197 2 99.0 Weakly correlated
19 ZNF75D 2 94.0 Weakly correlated
20 ZNF382 2 99.0 Weakly correlated
21 ZNF735 2 28.9 Highly correlated
22 ZFP57 2 87.0 Weakly correlated
23 ZNF641 2 99.0 Weakly correlated
24 ZNF679 2 28.9 Highly correlated
25 ZNF589 2 28.9 Highly correlated
26 ZKSCAN1 2 160.0 Weakly correlated
27 ZFP69B 2 99.0 Weakly correlated
28 ZNF2 1 99.0 Weakly correlated
29 ZNF471 1 94.0 Weakly correlated
30 ZNF202 1 160.0 Weakly correlated
31 ZNF547 1 74.0 Weakly correlated
32 ZNF530 1 28.9 Highly correlated
33 ZNF43 1 43.0 Weakly correlated
34 ZNF331 1 94.0 Weakly correlated
35 ZNF506 1 28.9 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF169 94.0 Weakly correlated
2 ZNF479 6.4 Weakly correlated
3 ZNF596 94.0 Weakly correlated
4 ZNF723 15.2 Moderately correlated
5 ZNF793 99.0 Weakly correlated