ZRdb KZFP & Repeats
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LTR_HERV15

  • Name
    HERV15
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000161
Description :

The associated Long Terminal Repeat is LTR15.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tttctggnggctcagaccgggattggagacgacagatttactgtctcctttgcctgcgggactagagccccggggccgggggagacccggcatccaaggcgcgccacgggggagcttcacccggatggagaccggctctccccgcatcccggcgccctgcccggcagcgcaacggaaccggggatggggctgcaggacgataccagcacttcaggaaccgcggtaaggagnaagggcccaaggcaggaaagcccgtcccatagggacgaaggggagcttgatcacctcccggggaccgaccactaatccaacccagagtggctgggggcggcaggagtggcctgccaatttggatgaacctcgtgtccccactaacaagtgaaagtggttcactggtggagaaaatgggccgatagagcggcaagtgcagcaaggnagagcttgctggcagggtggcaagagtggcttgccaccccaactgggagtgtgtgggtgcgtgtgaacctacccgggacacgagagaggctcgtttcgtccgatgaggagtcctggggtaggagtggtgtgtgtatgtgtgtgaatgtgggagcctaactaggctcacccgggacacgagagaggctcgtttcgtccgatgaggagtcctggggcagggaaggtgtgtgaaagagacggtctcgggagaggccaatgcggggagtgacgtggggaggcacagatcccttagcgcgggctgtgtgctccgaggcgagtgcgggggaaatcagacctaggacgctgcatacggctgataggaccagctccacggccgcagcaggctgtgacaggggaaggcacgttcctggctaagcagcgtccgaaactcccgtaataggacccggtctggtggacccgagagtgaaagtgagagtgaaagtgcgccgcaagggaggaaatgggagggaaagcgtcgaaaccgactcctttggagtgcatgataaagaattttaaaaaaggatttagaggtgattatgggatgaaactggatgctcaaaagttaaggacatactgtgaantagantggcccgctttcaatgtggggtggcccnccgaaggcacaatagacagggaattaattggccgtgtgtttaaggtggtcactggagtcggaggacaaccaggacacccagaccagtttccctatatngactcttggctcaatgtggcacaaactcgccccaagtggctacagccctgcctagagggatattgcaaggcattagtggctcgggcagcccaaccaaaggaagcagaggaacctaaagcccctagcgtctcccaggaaaaggaatccccgaagcctcagccgaaaccagttcttcaggccccacctgaggaaagggaatgtccgcccccatatatgtgccagtctacccgtctttggccagaataaggcaggaggcagagtcaggagcatccggagagtcgggctcggaggaaagtgaggctcagtctcccccgaccccagaggaacagaagcccccgttagaaaaaaacaaggaagatggacagggcgaggcagctgggcgcctccgctcaggccgaccacgggctttgcagatgccacttcgagagaccaggacacaagtttatgatgaccaggggcagatacaaggtggccctaggctttatgtttatcagcctttctccactactgatctcttaaattggaaacagcacgccccctcctatacagaaaagcctcaggctctcattgatttggtgaattctattattatgacacataacccgacctggccggattgtcaacaacttttgctaactttatttaatacagaggagcataggagagttaatcaggcagctctcagctggttagaaggggaagccccagaggccacccctaacccacgccagttcgccgtggagcgatacccaaatgaggaccctaactgggacccaaatgaggcaggggacatggaacggctgcagctatatagaaaggcactcctgaacgggataaaagcaggaggaaggaaggcaatgaatatgagtaaaatatcagaagtgcgccaaaagcctgacgaaagcccaagtgcattctatgaaaggctttgtgaggcatataggctgtacactccaattattccagaggctcctgaaaaccaaaatatgataaatatgacctttgtcaggcaagctcagggagacataagacgaaagcttcagaagctggaaggctttgcagggaaaaatattagtgaactcctggaaatagcaaacaaagtatacataaaccgggaagaagaggcagagagaaaggaagaaagaaaaaccagaaatagaaacaaagagacggctcaatttatagctgctgcactagcagaaagtaaccctggatttgctagagggcgtggccgaggcagaggccgaggaagagggcagacaagaccgggagangaaagccggtcccggttggacaggaaccaatgtgcaaggtgcaggcaaatgggccactggaaagatgagtgccccgaaaaggaaaaggatggagatgatggtcaatggtctaacacccgagtgcggcgttcggttgctagtcgtggtgcttcaaaggcagatcctgatctgatcggcttagcgggggccgagaattttgaggactgagacagaccgggctccatctttttaggccccggggagcctatggtctctatggaagtagggggccgattaatggattttttggtcgatactggtgctgatttctctgtggtaactcacccaattagcccccccacaaagaactgtgctactatcgtaggggctactggggccaaagaaaagagacctttttgcaaatccaggagatgtgttattgggggacaagaagtgcagcatgagtttctatatatgccaaattgtccagtgcccttgttggggagagacttactccagaaactgcaggcacaaatttcctttacacctaaagggaatatgacnctggagtttggaaagtcnaaggcaatggtattgactctaactgtcccaagggctgaggaatggcggctctatgaactgtgtgccagaaggccgccggagccggacctacacaatatgtggggaatgcttttcaaggtaccaggtgtatgggctgaggacaacccccctggacttgctgcaaacagacccccggtggtagtagagcttaaccctcatgctgccccggtacgagtccgtcaatacccactacccagagaggcaattgatggcataacaaaacatctaaatcggctctatgaacatgggattatagtaaaatgcaagtcctcntggaatactcctctgctgcccgtgcgcaagccaaatggtgaatacaggccagtgcaggacctccgggcggtaaacaaggccactgtcactatccatgccatagtacccaacccatacacaatgttgggacagattcctgctgangccacntggttcacgtgtctggacttaaaggatgccttcttttgcttgaggcttgctccccaaagtcagcctatatttgccttccagtgggggcaatcgcaatatacctggacaaggctgccgcaagggtttaagaattctcccactatcttcgaggaggctttggctaccgaccttgaggcttttgcgccacctagtgacaattgtgtgctattacaatacattgatgatttgctattcgctgcccccangagggaggaatgcctccaaggaacagagaggcttcttcacctgctgtgtgaagctggttacaaagtgtccaaggacaaggcaaaagtctgttttcgggaggttggatatctaggattcatggtatcccaaggccagcgcaggcttggaagtgcacgcaaggaggctgtatgtgcattgcccaccccagttacaaggcggcaggtcagggaatttctaggcgcggcgggattctgccgaatctggattccaaacttctcccttatagcaaggcccttatatgaggctaccaaaggaaaggaaagagagcccctcctatgggaaaaggaacaggaaaaggccttcaaggatataaaggaagctctcatccaggccccggcgctagggttgccagatgtaaaaaagcccttctttttgtatgtggatgaacgaaagggaatggcagtcggagtcttaactcagttgttgggctcttggcatcggccggtagcatacttatccaaaagactggacttggtggccttaggttggccccactgcctcagggcgttggcagctaccgcaatccttatagaagatgccaacaagctagccctaggtcagaagttaatagttcgggtgccacacgctgtagtcaccttaatggagcaaagaggacatcgttggctgtccaactctagaatgctaaagtatcaagggcttctgtgtgaaaatccccagataacactagagactgtaaataccttgaacccagctaccctgctgcctgtggaggaacccgattggaaggacggtgggttgcctcactgctggcaggaccttccccactgttgcataaatacggtggacgaagtgttctcgagccgggaagatctcagagatacccccttggagagcccagatgttgaatacttcactgatggtagcagtttcataacagatggggtgcgatatgcagggtatgcagtagtgacccaacactcggtggtcgaggctcaagccttaccttctgggacttccgctcagaaggctgaattaatagcattaaccagagcactgttattggccaaggggaagaaagtaaacatatatactgactcaagatatgcttttgcaaccctgcacgcccatggggcaatatacaaagagagaggacttttgactactgaaggaaaagaaataaaaaataaagaggaaattttgcaattattagaagccgtatgggctccagagaaggtggctgtcattcattgcaaaggacaccaaatcgggaaaagctatgaggcgcagggcaacagaaaggcagaccgagaggctcggcgggcagcaatgagcaaggctttacctgaagaaagaactctagcaatgcctctccttatagagccccctttgccggaggtacccaattactcttcaagtgaaaaagcttggtttggtcaggaaacaggaaaatatattaaaggtggatggtggctgttctctgacgggaggctagccgtcccagagacaatagccccaaggtttgtgaagcagatccatcaaggaacacacattggaaggacggccctagagactttgataggtcggcacttctatgtgccacggctctctgccatcacccgtgctgtttgtgaacaatgtctatcctgtgcccggaataatccaaaacaaggacctactcgacccccaggaattcaggaaacgggagctgtgccttgtgagaacctgcttgtagactttaccgagttgcctcgagcaggaggttaccggtatatgctagtgtttgtttgcaccttctcggggtgggttgaggccttccccaccaggactgaaaaggcacgagaggtgacaaaggtgctactaaaagacatcataccaagatttgggttgcctttaaccctaggatcagacaatggtcctgcatttgtggcagaagtagtacaacagctgactcaacttttaaagatcaaatggaaactgcacacagcctactgaccacagagttcagggaaggtggaacggatgaaccggacactcaaacagctactaaaaaagttttgccaggaaactcacttacgatgggatcaggtcttgcccatggtcctcctccaggtcaggtgtacacctacaaaacaaactgggtattcgccctatgaaatattgttcggaaggccacccccaatcattaatcaaattagaggggatttaaaggagttaggagagctaacccttagaagacagatgcaggctttaggagtggcaatgcaggaggtgcanggctgggtaagagaaaggatacctataagtctaacagacccagtgcatccacataagccgggggactctgtctgggttaaaaggtggaatccaacnaccctgggacccntacgggatgggccccatattgtaatcatgtctactcccactgctgttaaagttgcaggtgtcacaccttggattcaccatagccggctgaaaccagcggcagcagtgactcccgacgacgaccagtggattagccaacaagacccagatcgccccacccgaatagtcctacggcgaaacccaaccaccggtaagaaggacaactgccctgctctgaccacaccggaggctggtcagtctacgcacggctgaagcttgaggatcctgcaagctctgctctagtcacatcccggaagctgactagtctacgcacagccgaagctaagaggaccatctccggataagtaaatgtggatacaatttataagcctagttataattctgtcaatactgattgttctgttgttacgttattactgcaaatgctgcaaatgtctatgcccagaggaaggtttgccatgcccatgtgtagtgtaagcatgtttctattacatacactgatgttgttaccatttctgcctatactaaaaggggagaaatctctagaaggatgcccacactgtgtacacactacctgggtaaggaataccatagttaaaactctactgtaccatacctactatgaatgtacaggaaccaagttaggaacctgcacatacaaccagaccacctattcagtctgtgacccaggaaataatcagctatatgtatgttatgaccctaagctcttaccctatgaattctggtttgaggtacatattaaatcagagagagaaaaagaaggagagcttatagctcgaaccaaagaagcccctccctcctataaagggcctatttccttgtactttgatgcctgccatgccgcatatgttcataatcctaaaaaaccagaagcagtctgcaatggtttaacacaagagaggcttagcagcagcagccctaaacatctgtacggagaaccacaaatcggatgcccagactgtaacattcagtggtctacgctaacacagctccaacacttatattcaggaaggactgctctgctaagtagtatgtcaaccaaaccaaattgtaagacaaggacatgcaatcctttaaattttactatcttaaagccagagctacctttttggtctacaggacagacagcactattacgagttgatagacaaggagcaggccttggagttccactactaattgtcaaaaagactagaaggactcaaatgcgtccaaccccgcaattccgggtccataagtcattctataagcattttgatcagccagtgcccgagcttcccccatcaaccaaaaacttatttgctcaactagctgaaaacatagctggcagcttaggaatttcctcatgctatgtatgtggaggaactaatatgggggaccagtggccatgggaggcaaaggaattaatgccacaagataacttcacttcgcctaaccctgccagtgaaccaacagcctcagccagtgtttggttgttaaaaacctccataattggaaagtactgtatcgcccgatggggaaaggctttcacagaggcagtaggagaaacaacctgcctagggcaacagtattatgatgagactaaaaacaaaactctatggagaaacgcccagaacgactcctacttaccagatccaaaccctttctctcgattctctactctaagccactcttggcatcagctagaggctccaaatgcttggaaggcaccctctggcctatattggatctgtggagcacgggcatatcggcaactgccggctaaatggacaggggcatgtgtgttaggaacaatcaagccatccttctttctaattcctctaaagcaaggggaactcttaggatatccagtttatgatgaaaataaaagaactagaagaagcataatcacaaaaatagacacaaatatcaaaaaggatgtggacataggagactggaaagataatgaatggcctcctgaaagaatcattaaatactatgggccagctacctgggcgcaagacgggtcatgggggtaccgcaccccaatctatatgctcaaccgcatcataaggttgcaggcagtccttgaaattataaccaatgaaacgtcaagggcactagatttattggcaatacaagcaacacaaatgagaaatgctatatatcaaaatagattggctttagattacctcttagcctcagaaggaggagtatgtggaaaatttaatttaaccaactgttgcctagaaatcgatgataatggccgagctgtcatggaaatcacagctagaatgcgcaagttggcccatgttccagttcagacttggtccgggtggtccccggattccttgtttggaggatggttctcaacctttggaggattcaaaaccctcattggtgggttcttgcttattcttggcatctgcctcatcctcccttgccttttacccctgtttattaggagtattcagtcaactatagaggcaatagtaacccgacacactaccgcgcagttgatggcattaaccaaatatcagccgctgccagtagaagaagnagctcagctccgcgaagaggtggcaaatagtggtgctttctattaacacctttgttataaaaagcaccaaaggggggaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 14 43.0 Weakly correlated
2 ZNF394 10 99.0 Weakly correlated
3 ZNF382 10 99.0 Weakly correlated
4 ZNF589 9 28.9 Highly correlated
5 ZNF175 9 94.0 Weakly correlated
6 ZNF584 7 99.0 Weakly correlated
7 ZNF723 7 15.2 Moderately correlated
8 ZNF197 7 99.0 Weakly correlated
9 ZNF2 7 99.0 Weakly correlated
10 ZKSCAN8 6 160.0 Weakly correlated
11 ZFP37 5 99.0 Weakly correlated
12 ZNF486 5 8.6 Weakly correlated
13 ZNF701 5 28.9 Highly correlated
14 ZNF18 5 160.0 Weakly correlated
15 ZNF251 4 94.0 Weakly correlated
16 ZNF202 4 160.0 Weakly correlated
17 ZNF263 3 180.0 Weakly correlated
18 ZNF792 3 94.0 Weakly correlated
19 ZNF8 3 99.0 Weakly correlated
20 ZKSCAN1 3 160.0 Weakly correlated
21 ZNF75D 2 94.0 Weakly correlated
22 ZNF705B 2 28.9 Highly correlated
23 ZNF793 2 99.0 Weakly correlated
24 ZNF84 2 99.0 Weakly correlated
25 ZNF680 2 28.9 Highly correlated
26 ZNF674 2 99.0 Weakly correlated
27 ZNF597 2 94.0 Weakly correlated
28 ZNF92 2 28.9 Highly correlated
29 ZFP57 2 87.0 Weakly correlated
30 ZNF140 2 99.0 Weakly correlated
31 ZNF182 2 99.0 Weakly correlated
32 ZNF350 2 99.0 Weakly correlated
33 ZNF735 1 28.9 Highly correlated
34 ZFP69B 1 99.0 Weakly correlated
35 ZNF133 1 99.0 Weakly correlated
36 ZNF878 1 43.0 Weakly correlated
37 ZNF273 1 28.9 Highly correlated
38 ZNF274 1 99.0 Weakly correlated
39 ZNF765 1 8.6 Weakly correlated
40 ZNF317 1 99.0 Weakly correlated
41 ZNF558 1 99.0 Weakly correlated
42 ZNF324 1 99.0 Weakly correlated
43 ZNF707 1 74.0 Weakly correlated
44 ZNF425 1 94.0 Weakly correlated
45 ZNF506 1 28.9 Highly correlated
46 ZNF554 1 99.0 Weakly correlated
47 ZNF66 1 0.0 Weakly correlated
48 ZNF610 1 28.9 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 8 15.2 Moderately correlated
2 ZNF140 2 99.0 Weakly correlated
3 ZNF674 2 99.0 Weakly correlated
4 ZNF202 2 160.0 Weakly correlated
5 ZNF766 1 43.0 Weakly correlated
6 ZNF792 1 94.0 Weakly correlated
7 ZNF680 1 28.9 Highly correlated
8 ZNF878 1 43.0 Weakly correlated
9 ZNF479 1 6.4 Weakly correlated
10 ZNF707 1 74.0 Weakly correlated
11 ZNF554 1 99.0 Weakly correlated
12 ZNF18 1 160.0 Weakly correlated
13 ZNF394 1 99.0 Weakly correlated
14 ZFP57 1 87.0 Weakly correlated
15 ZNF701 1 28.9 Highly correlated
16 ZNF506 1 28.9 Highly correlated
17 ZNF274 1 99.0 Weakly correlated
18 ZNF75D 1 94.0 Weakly correlated
19 ZNF597 1 94.0 Weakly correlated
20 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF723 15.2 Moderately correlated