ZRdb KZFP & Repeats
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LINE_HAL1ME

  • Name
    HAL1ME
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000157
Description :

Full ORF1 between ~724-1707.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggcttccggttcaagatggcggactgagcacacgcgtctacctcccctccctcccaaaatcccattgaaatgacagaaaagatatttttaaaagaatgaaaccataacagcgctggaaaacaagaaagggtgccatcagcggaccagaaattttgaggaattcctggaagatagaaagcagatgggatcggattgacggagaaancagagcagaggaaaccgcagcccaaaacaccggaggtaagagcggttcttcccaagggagccccggagaagctccaagctcggagtcaacaaatacaaagagcaggagtgggccgtggggcaatcatcagggtaattaattaaagaactgcattcggaacagctgggccagtgggtcctccctccccctctcccgcgtanacanagagcagctggcagcagcggcttttgcccccaggctaaagcccgagaactgctctctaaagaaagtgggcgatctgcctggggagggctcctagtgtgggtgttggggcctgagagagaagcagagcagagcttgaggtaactccggacctccacaacagacacggaggggaaaaaggaaagggaagaggcagctccgcccaggagtgaaatacactaaagcgctccacccccagagtaaagccctccttactttggcaattgtgggggtccccagcctgcctgcctgctccctgcccacgcaccctaaagggaagcctgcctgtcgacacgccccgcccacttacacaggagcccgcagtcagccctcccattcaagggagaggcctgttggggaaacagacctacacaactgcagaggaaacccacgccagctacctatactaatcaacctagtccttcattcataaatatgaacggacaaccaaggatcaccagacatttgaggaaaaccaacagcatgaaagagaaggaccaagatgaacaaacagaacaactgaccccggaggaaacagagataattcagggaacagaagagaactttaaaaaaattctaattagtatcctcagagagattcgagaagatattgcatccataaaacaagaacaggntgctatgaaaaagaagcaatcagagaacaagaaagagttcttggaaattaaaaatatgattgccaaaatnaaaaattcaatagaagggttggaagataaagtcgaggaaatctcccagaacgtagagcaaaaagacaaagagatggaaaatatgagagaaaagttaagagacatggaggatagatccaggaggtccaacatccatctaataggagttccagaaggagagaacagaganaatggaggggaggaaataatcaaagaaataatagaagaaaatttcccngagctgaagaaagacacgagtcttcagattgaaagggcccaccgagtgccgagcaggatgaatgaaaaaagacccacacctagacacatcntngtgaaatttcagaacnccaaggataaagagaaaatcctaaaagcttccagagagaaaaaacaggttacctacaaaggaacgagaatcagactggcatcagacttctcatcagcaacactggatgctagaagacaatggagcaatgtcttcaaagttctgagggaaaatnattttgaacctagaattctatacccagccaaactatcaatcaagtgtgagggcaaaataaagacattttcagacatgcaaggactcagaaagtttaccncccacgtaccctntntgaaaaaattactcgaggatgtactccagcaaaacgaaaaaggaatccaagaaagaggangacatgggatacaagaaacagtggcagctgagtatgacccagaagaagtgaaggaagctaaaaagaaattaaaagagaatccatttgaccttgacgcttggaanattctccttcgagcggcanaggtttagtgacataggattacatttccttctctatgggtccaatcacactacttggttctgcagtgaataatatttacataatcataatantgtaaatgctgtttattggttttcaatttttagaatcaacctatagacaaagcacggaagacttaattatagttacagaacagaatgtaaatgttataaaccttgacaatgtaaaaataatanaataacnaaaattgggaggtagaagggggaagagaggtggaaggaagtgtaagngcgctaanttcctcatcttncatagcggggagtcaanagatactgtctaaagttgataaatcaagaaatagaggtntaagtatattatttaaagttataaaggtaaccantagaagaactaaaaataantaacagtnaaaagtggttgcctctggggagtgggatngagatggaagagggnaggganagggactacttttcattttatacccttctgtactgtttgaattttttnnaccatgtgcatgtattacttttataaaaataaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 181 99.0 Highly correlated
2 ZIM3 139 87.0 Moderately correlated
3 ZNF766 74 43.0 Weakly correlated
4 ZNF317 73 99.0 Highly correlated
5 ZNF263 67 180.0 Weakly correlated
6 ZFP28 62 99.0 Highly correlated
7 ZNF394 61 99.0 Highly correlated
8 ZNF680 47 28.9 Weakly correlated
9 ZFP37 37 99.0 Highly correlated
10 ZNF2 37 99.0 Highly correlated
11 ZNF705B 37 28.9 Weakly correlated
12 ZNF679 31 28.9 Weakly correlated
13 ZNF793 29 99.0 Highly correlated
14 ZNF182 28 99.0 Highly correlated
15 ZNF589 28 28.9 Weakly correlated
16 ZNF705D 28 28.9 Weakly correlated
17 ZNF18 27 160.0 Weakly correlated
18 ZNF534 25 19.6 Weakly correlated
19 ZNF287 23 99.0 Highly correlated
20 ZNF554 23 99.0 Highly correlated
21 ZNF558 23 99.0 Highly correlated
22 ZNF101 22 43.0 Weakly correlated
23 ZNF723 22 15.2 Weakly correlated
24 ZNF175 21 94.0 Moderately correlated
25 ZKSCAN1 20 160.0 Weakly correlated
26 ZNF251 19 94.0 Moderately correlated
27 ZNF479 19 6.4 Weakly correlated
28 ZFP69B 18 99.0 Highly correlated
29 ZNF133 17 99.0 Highly correlated
30 ZNF324 15 99.0 Highly correlated
31 ZNF584 15 99.0 Highly correlated
32 ZNF75D 15 94.0 Moderately correlated
33 ZNF568 14 99.0 Highly correlated
34 ZNF583 14 99.0 Highly correlated
35 ZNF197 13 99.0 Highly correlated
36 ZNF597 13 94.0 Moderately correlated
37 ZNF701 13 28.9 Weakly correlated
38 ZNF257 12 0.0 Weakly correlated
39 ZNF585A 12 99.0 Highly correlated
40 ZNF92 12 28.9 Weakly correlated
41 ZKSCAN8 10 160.0 Weakly correlated
42 ZNF528 9 43.0 Weakly correlated
43 ZNF136 8 74.0 Weakly correlated
44 ZNF140 8 99.0 Highly correlated
45 ZNF610 8 28.9 Weakly correlated
46 ZNF486 7 8.6 Weakly correlated
47 ZNF519 7 19.6 Weakly correlated
48 ZNF547 7 74.0 Weakly correlated
49 ZFP57 6 87.0 Moderately correlated
50 ZNF160 6 74.0 Weakly correlated
51 ZNF28 6 28.9 Weakly correlated
52 ZNF471 6 94.0 Moderately correlated
53 ZNF506 6 28.9 Weakly correlated
54 ZKSCAN5 5 160.0 Weakly correlated
55 ZNF320 5 28.9 Weakly correlated
56 ZNF485 5 94.0 Moderately correlated
57 ZNF682 5 28.9 Weakly correlated
58 ZNF707 5 74.0 Weakly correlated
59 ZNF141 4 43.0 Weakly correlated
60 ZNF202 4 160.0 Weakly correlated
61 ZNF264 4 99.0 Highly correlated
62 ZNF30 4 94.0 Moderately correlated
63 ZNF34 4 99.0 Highly correlated
64 ZNF41 4 99.0 Highly correlated
65 ZNF441 4 43.0 Weakly correlated
66 ZNF44 4 43.0 Weakly correlated
67 ZNF549 4 87.0 Moderately correlated
68 ZNF569 4 99.0 Highly correlated
69 ZNF716 4 19.6 Weakly correlated
70 ZNF735 4 28.9 Weakly correlated
71 ZNF823 4 43.0 Weakly correlated
72 ZNF878 4 43.0 Weakly correlated
73 ZFP82 3 99.0 Highly correlated
74 ZNF169 3 94.0 Moderately correlated
75 ZNF248 3 99.0 Highly correlated
76 ZNF350 3 99.0 Highly correlated
77 ZNF425 3 94.0 Moderately correlated
78 ZNF43 3 43.0 Weakly correlated
79 ZNF468 3 28.9 Weakly correlated
80 ZNF563 3 28.9 Weakly correlated
81 ZNF641 3 99.0 Highly correlated
82 ZNF695 3 28.9 Weakly correlated
83 ZNF786 3 99.0 Highly correlated
84 ZNF792 3 94.0 Moderately correlated
85 ZNF808 3 19.6 Weakly correlated
86 ZNF816 3 28.9 Weakly correlated
87 ZNF8 3 99.0 Highly correlated
88 ZFP30 2 99.0 Highly correlated
89 ZNF12 2 99.0 Highly correlated
90 ZNF135 2 94.0 Moderately correlated
91 ZNF17 2 69.0 Weakly correlated
92 ZNF214 2 99.0 Highly correlated
93 ZNF274 2 99.0 Highly correlated
94 ZNF282 2 319.0 Weakly correlated
95 ZNF334 2 99.0 Highly correlated
96 ZNF429 2 28.9 Weakly correlated
97 ZNF440 2 28.9 Weakly correlated
98 ZNF454 2 99.0 Highly correlated
99 ZNF585B 2 99.0 Highly correlated
100 ZNF607 2 43.0 Weakly correlated
101 ZNF674 2 99.0 Highly correlated
102 ZNF677 2 99.0 Highly correlated
103 ZNF727 2 19.6 Weakly correlated
104 ZNF778 2 74.0 Weakly correlated
105 ZNF91 2 6.0 Weakly correlated
106 ZIK1 1 87.0 Moderately correlated
107 ZNF124 1 43.0 Weakly correlated
108 ZNF189 1 99.0 Highly correlated
109 ZNF225 1 74.0 Weakly correlated
110 ZNF230 1 28.9 Weakly correlated
111 ZNF250 1 99.0 Highly correlated
112 ZNF267 1 43.0 Weakly correlated
113 ZNF273 1 28.9 Weakly correlated
114 ZNF284 1 43.0 Weakly correlated
115 ZNF331 1 94.0 Moderately correlated
116 ZNF33A 1 99.0 Highly correlated
117 ZNF347 1 43.0 Weakly correlated
118 ZNF445 1 99.0 Highly correlated
119 ZNF470 1 99.0 Highly correlated
120 ZNF490 1 43.0 Weakly correlated
121 ZNF561 1 43.0 Weakly correlated
122 ZNF570 1 99.0 Highly correlated
123 ZNF605 1 99.0 Highly correlated
124 ZNF665 1 28.9 Weakly correlated
125 ZNF684 1 99.0 Highly correlated
126 ZNF730 1 19.6 Weakly correlated
127 ZNF777 1 319.0 Weakly correlated
128 ZNF799 1 43.0 Weakly correlated
129 ZNF84 1 99.0 Highly correlated
130 ZNF85 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 57 87.0 Moderately correlated
2 ZFP28 32 99.0 Highly correlated
3 ZNF263 17 180.0 Weakly correlated
4 ZNF793 17 99.0 Highly correlated
5 ZNF534 15 19.6 Weakly correlated
6 ZNF287 15 99.0 Highly correlated
7 ZNF317 14 99.0 Highly correlated
8 ZNF680 13 28.9 Weakly correlated
9 ZNF101 12 43.0 Weakly correlated
10 ZNF705B 9 28.9 Weakly correlated
11 ZNF723 9 15.2 Weakly correlated
12 ZNF133 6 99.0 Highly correlated
13 ZNF585A 6 99.0 Highly correlated
14 ZNF701 6 28.9 Weakly correlated
15 ZNF705D 5 28.9 Weakly correlated
16 ZNF136 5 74.0 Weakly correlated
17 ZNF558 5 99.0 Highly correlated
18 ZNF34 4 99.0 Highly correlated
19 ZNF479 4 6.4 Weakly correlated
20 ZNF679 4 28.9 Weakly correlated
21 ZNF257 4 0.0 Weakly correlated
22 ZNF589 4 28.9 Weakly correlated
23 ZNF766 4 43.0 Weakly correlated
24 ZNF140 4 99.0 Highly correlated
25 ZNF735 4 28.9 Weakly correlated
26 ZNF175 3 94.0 Moderately correlated
27 ZNF597 3 94.0 Moderately correlated
28 ZNF468 3 28.9 Weakly correlated
29 ZNF382 3 99.0 Highly correlated
30 ZNF160 3 74.0 Weakly correlated
31 ZNF528 3 43.0 Weakly correlated
32 ZFP37 2 99.0 Highly correlated
33 ZNF169 2 94.0 Moderately correlated
34 ZKSCAN5 2 160.0 Weakly correlated
35 ZNF792 2 94.0 Moderately correlated
36 ZNF251 2 94.0 Moderately correlated
37 ZNF197 2 99.0 Highly correlated
38 ZNF584 2 99.0 Highly correlated
39 ZNF506 2 28.9 Weakly correlated
40 ZNF823 2 43.0 Weakly correlated
41 ZNF18 2 160.0 Weakly correlated
42 ZNF716 2 19.6 Weakly correlated
43 ZNF485 2 94.0 Moderately correlated
44 ZNF707 2 74.0 Weakly correlated
45 ZNF324 1 99.0 Highly correlated
46 ZNF816 1 28.9 Weakly correlated
47 ZKSCAN1 1 160.0 Weakly correlated
48 ZFP69B 1 99.0 Highly correlated
49 ZNF695 1 28.9 Weakly correlated
50 ZFP57 1 87.0 Moderately correlated
51 ZNF225 1 74.0 Weakly correlated
52 ZNF44 1 43.0 Weakly correlated
53 ZNF641 1 99.0 Highly correlated
54 ZNF92 1 28.9 Weakly correlated
55 ZNF267 1 43.0 Weakly correlated
56 ZNF429 1 28.9 Weakly correlated
57 ZNF440 1 28.9 Weakly correlated
58 ZNF684 1 99.0 Highly correlated
59 ZNF610 1 28.9 Weakly correlated
60 ZNF264 1 99.0 Highly correlated
61 ZNF554 1 99.0 Highly correlated
62 ZNF320 1 28.9 Weakly correlated
63 ZNF75D 1 94.0 Moderately correlated
64 ZNF471 1 94.0 Moderately correlated
65 ZNF273 1 28.9 Weakly correlated
66 ZNF605 1 99.0 Highly correlated
67 ZNF282 1 319.0 Weakly correlated
68 ZNF786 1 99.0 Highly correlated
69 ZNF141 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP28 99.0 Highly correlated
2 ZNF133 99.0 Highly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF680 28.9 Weakly correlated
6 ZNF701 28.9 Weakly correlated
7 ZNF793 99.0 Highly correlated