ZRdb KZFP & Repeats
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LINE_HAL1M8

  • Name
    HAL1M8
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000156
Description :

About 1000 23% substituted copies in Laurasiatherian reconstruction.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggaggattctgggaagatggcggcggcggcggcatagtttttgaatctccccgaatccccacataaaaacagacagagcaactagatagcaaaaccaaaaacccatggacaacatttacaacaaaactaggtgacaaggtatccccacgaaccccaaaatacaagcgggtggggacaaaccaccaacagccacaagacctgcatggtatcggcgtctgtgcgggaggaagcagagggaagcaacggggcgtctgacggacctgagaacaggagaaccccaaaatagccaacaggtattcactggaaagcgcggcgggccaatttgagaacagcagctgaaactgggaggggttttgcccactccaatagcgggtgagtgcaaggggcccgcggtaaggtctgaaggggctggagcagtctagcccctatgaactctcgaaactgaccngccagggctcccttccaggacagggccccacactgaggagaaactgctgggagtggaatcaaaattgagcaggacagggacaacagagacgaaggaaagagaaggtccagataaaagtgggggaggggaacagagccaggaaatctcagaaagcaagccgccatatttttgaacactacacgaaaacaacagaagagggagctctgtgaagttagaaaagctatcctgaaccacgcctccttctaaaagttcaggaaaactaatttcacataaaaatgagcaacagaaaagtatcgaggtcaaatcccatacaaagttattataagaaaaaagagaataaggagcagaataacatccctacagacaatgaaagcacgccagaaagacatgcccacaaaacagatcaaaactgtaacctactatttcaaaacgagctaaaagacattaagaaaatgatacaagacatgaaagaacaacataaatcagaattagaaaaactcagaaatgaggtgacagaactcaggaaagaattagaaataaaagaaaaaatcatttcagaaatgaagactaaactagaaggaacacaagagcgaataaacacaacagataatgccttaagagaaatagaaggtgaaaaggaggaaaattttaaaaatcaaaaagaaatgaagaaagagataaaaaggattcgagagaaagtgacaaatattgaagataggcaaagaagatccaacatacggataataggagtccctgaagaagaaaaccaaagcaagggaacagaacaaatactaaaaactataattcaagaaaactttcctgaaataaaaaaagatttgaaactacatattgaaagagcacaccgcgtacctgagaatatcgacccagaacgaccaacaccaagacatattctagtaaaattactggactttaaagaaaaagaaaaaatcctttgggcatctaggcaaaaagagcangtgacttataagggaaagaaaattagattatcatcagacttttcgacagcaacgctttatgccagaagaaaatggagtaacatatttaagatactcaaggaaagaaaatgtgagccaaggattttatatccagcaaaactgactttcaagtataaagggcacagacaaactgttatcaacatgcaagaactcagggaatattgttcccatgagcccttcctgaggaatctactagagaacgagcttcagacaaccaaaatgactagagagacatcgacataaggactggtggtgagcattaaatatatagttacttgtagaactaagactaaatgagggttaaaagggagagagtatagtatgtaatggctatatgctctgacaatgtagatatagtacaactattaaaaaatgggaggagagaatggggagagcatatgcaaaaaaatttttaactgttttcagtaatcatattggtggtggtagtattagtattgttattctgagactgttgtgtgtgtaatgtgggataaagcaaatgagtaattatgggatattctaattctatcatcccctgtgtccttgagaaccaggattctcggtgtggaagaaaggagatacagatgtaatatagaagaggttaagtaaaaaccctgtagtcctgaatttgaattggaagtatcagtatgaactcatgaggtattttatctttaaaaatatatatgtatttcctagctctgtccactgaaaaggcctagaaacaatgaccaacccagtagcaatgagcatccctagcgcccagattgtggtcttgaaataccatttcccactaaaagaaaccagggcttcttggagaaatggctgattccaggtctggggcaggaaatgtacaagatgagcctggaacatcttgtcataccagatagcaaggaagctatcaaagactactagggtcatgtcaaaaggactcaggagccaacttgaagaggctcccactggccaaagatgggacaatttgagcttcaataaggataataattgcaatggattgaaacccatcaaatatgtttaaatccatgagttcataatgatataaataaataattgaataaataaataaatggtagagaagggaagcgtctctttatagaagtattccagctaataaatgaaaaagaaatgatagaattagaatatcaccattttgcaacccccaatgaattaatggatctaggcattgagcatcaacggctgctaacatcacaaaaagagagacaaccagacattatgtgcctcctgatgaaagaacacancaccacctatagtcttgccaaagggatcgaacctgagtctgatcaagcctctggatccagctgccaatttgcaggaaatacagaggacagaggaacatgttgaactgcaccatgagtatgcaatcagcaaaatccagactgtgggaaactctacaggtcaaacggcccgggttcttcaacagataaattgtaaggaaaagaaagggatggagggggaacctgtagattaaaagagacttaaaagacatatcaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 95 99.0 Highly correlated
2 ZNF133 93 99.0 Highly correlated
3 ZNF92 61 28.9 Weakly correlated
4 ZNF680 52 28.9 Weakly correlated
5 ZIM3 40 87.0 Moderately correlated
6 ZNF766 28 43.0 Weakly correlated
7 ZNF263 27 180.0 Weakly correlated
8 ZNF317 22 99.0 Highly correlated
9 ZNF394 22 99.0 Highly correlated
10 ZNF75D 21 94.0 Moderately correlated
11 ZFP37 18 99.0 Highly correlated
12 ZNF2 17 99.0 Highly correlated
13 ZFP69B 12 99.0 Highly correlated
14 ZNF534 12 19.6 Weakly correlated
15 ZNF610 12 28.9 Weakly correlated
16 ZNF679 12 28.9 Weakly correlated
17 ZNF793 11 99.0 Highly correlated
18 ZNF136 10 74.0 Weakly correlated
19 ZNF705B 9 28.9 Weakly correlated
20 ZNF589 8 28.9 Weakly correlated
21 ZNF723 8 15.2 Weakly correlated
22 ZNF101 7 43.0 Weakly correlated
23 ZNF18 7 160.0 Weakly correlated
24 ZNF251 7 94.0 Moderately correlated
25 ZNF287 7 99.0 Highly correlated
26 ZNF324 7 99.0 Highly correlated
27 ZNF486 7 8.6 Weakly correlated
28 ZNF558 7 99.0 Highly correlated
29 ZNF597 7 94.0 Moderately correlated
30 ZNF479 6 6.4 Weakly correlated
31 ZNF547 6 74.0 Weakly correlated
32 ZKSCAN1 5 160.0 Weakly correlated
33 ZNF160 5 74.0 Weakly correlated
34 ZNF175 5 94.0 Moderately correlated
35 ZNF182 5 99.0 Highly correlated
36 ZNF33A 5 99.0 Highly correlated
37 ZNF554 5 99.0 Highly correlated
38 ZNF677 5 99.0 Highly correlated
39 ZNF705D 5 28.9 Weakly correlated
40 ZFP57 4 87.0 Moderately correlated
41 ZNF197 4 99.0 Highly correlated
42 ZNF484 4 99.0 Highly correlated
43 ZNF485 4 94.0 Moderately correlated
44 ZNF519 4 19.6 Weakly correlated
45 ZNF585B 4 99.0 Highly correlated
46 ZNF616 4 43.0 Weakly correlated
47 ZNF682 4 28.9 Weakly correlated
48 ZNF701 4 28.9 Weakly correlated
49 ZNF786 4 99.0 Highly correlated
50 ZNF792 4 94.0 Moderately correlated
51 ZNF169 3 94.0 Moderately correlated
52 ZNF257 3 0.0 Weakly correlated
53 ZNF284 3 43.0 Weakly correlated
54 ZNF320 3 28.9 Weakly correlated
55 ZNF331 3 94.0 Moderately correlated
56 ZNF41 3 99.0 Highly correlated
57 ZNF549 3 87.0 Moderately correlated
58 ZNF585A 3 99.0 Highly correlated
59 ZNF605 3 99.0 Highly correlated
60 ZNF8 3 99.0 Highly correlated
61 ZFP28 2 99.0 Highly correlated
62 ZNF140 2 99.0 Highly correlated
63 ZNF17 2 69.0 Weakly correlated
64 ZNF253 2 19.6 Weakly correlated
65 ZNF282 2 319.0 Weakly correlated
66 ZNF28 2 28.9 Weakly correlated
67 ZNF334 2 99.0 Highly correlated
68 ZNF425 2 94.0 Moderately correlated
69 ZNF506 2 28.9 Weakly correlated
70 ZNF528 2 43.0 Weakly correlated
71 ZNF573 2 94.0 Moderately correlated
72 ZNF584 2 99.0 Highly correlated
73 ZNF669 2 43.0 Weakly correlated
74 ZNF84 2 99.0 Highly correlated
75 ZKSCAN8 1 160.0 Weakly correlated
76 ZNF10 1 99.0 Highly correlated
77 ZNF141 1 43.0 Weakly correlated
78 ZNF19 1 99.0 Highly correlated
79 ZNF202 1 160.0 Weakly correlated
80 ZNF26 1 99.0 Highly correlated
81 ZNF273 1 28.9 Weakly correlated
82 ZNF283 1 99.0 Highly correlated
83 ZNF337 1 43.0 Weakly correlated
84 ZNF429 1 28.9 Weakly correlated
85 ZNF43 1 43.0 Weakly correlated
86 ZNF440 1 28.9 Weakly correlated
87 ZNF441 1 43.0 Weakly correlated
88 ZNF468 1 28.9 Weakly correlated
89 ZNF490 1 43.0 Weakly correlated
90 ZNF567 1 99.0 Highly correlated
91 ZNF570 1 99.0 Highly correlated
92 ZNF583 1 99.0 Highly correlated
93 ZNF611 1 19.6 Weakly correlated
94 ZNF641 1 99.0 Highly correlated
95 ZNF674 1 99.0 Highly correlated
96 ZNF695 1 28.9 Weakly correlated
97 ZNF707 1 74.0 Weakly correlated
98 ZNF780B 1 74.0 Weakly correlated
99 ZNF789 1 99.0 Highly correlated
100 ZNF823 1 43.0 Weakly correlated
101 ZNF879 1 99.0 Highly correlated
102 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF133 54 99.0 Highly correlated
2 ZNF680 21 28.9 Weakly correlated
3 ZIM3 18 87.0 Moderately correlated
4 ZNF75D 9 94.0 Moderately correlated
5 ZNF534 7 19.6 Weakly correlated
6 ZNF382 7 99.0 Highly correlated
7 ZNF263 6 180.0 Weakly correlated
8 ZNF136 6 74.0 Weakly correlated
9 ZNF287 6 99.0 Highly correlated
10 ZNF677 5 99.0 Highly correlated
11 ZNF793 5 99.0 Highly correlated
12 ZNF479 5 6.4 Weakly correlated
13 ZNF2 4 99.0 Highly correlated
14 ZNF92 4 28.9 Weakly correlated
15 ZNF484 4 99.0 Highly correlated
16 ZNF485 3 94.0 Moderately correlated
17 ZNF585A 3 99.0 Highly correlated
18 ZNF723 3 15.2 Weakly correlated
19 ZNF33A 3 99.0 Highly correlated
20 ZNF605 3 99.0 Highly correlated
21 ZNF101 3 43.0 Weakly correlated
22 ZNF160 3 74.0 Weakly correlated
23 ZNF766 2 43.0 Weakly correlated
24 ZNF792 2 94.0 Moderately correlated
25 ZNF597 2 94.0 Moderately correlated
26 ZNF169 2 94.0 Moderately correlated
27 ZNF573 2 94.0 Moderately correlated
28 ZNF317 2 99.0 Highly correlated
29 ZNF18 2 160.0 Weakly correlated
30 ZNF705B 1 28.9 Weakly correlated
31 ZNF273 1 28.9 Weakly correlated
32 ZNF257 1 0.0 Weakly correlated
33 ZNF567 1 99.0 Highly correlated
34 ZNF705D 1 28.9 Weakly correlated
35 ZNF429 1 28.9 Weakly correlated
36 ZNF679 1 28.9 Weakly correlated
37 ZNF394 1 99.0 Highly correlated
38 ZNF682 1 28.9 Weakly correlated
39 ZNF641 1 99.0 Highly correlated
40 ZFP28 1 99.0 Highly correlated
41 ZNF251 1 94.0 Moderately correlated
42 ZNF202 1 160.0 Weakly correlated
43 ZNF823 1 43.0 Weakly correlated
44 ZNF611 1 19.6 Weakly correlated
45 ZNF610 1 28.9 Weakly correlated
46 ZNF440 1 28.9 Weakly correlated
47 ZNF253 1 19.6 Weakly correlated
48 ZNF780B 1 74.0 Weakly correlated
49 ZNF589 1 28.9 Weakly correlated
50 ZNF528 1 43.0 Weakly correlated
51 ZNF140 1 99.0 Highly correlated
52 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF136 74.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF382 99.0 Highly correlated
5 ZNF534 19.6 Weakly correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF75D 94.0 Moderately correlated