ZRdb KZFP & Repeats
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LINE_HAL1B

  • Name
    HAL1B
  • Repbase
    HAL1B
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000155
Description :

The 'ORF1-like' coding region ends somewhere around bp 660. gag ORF from715-1686.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aaaaattcaccagcagcaaccaaacaaggaaaggggtacaacctcatgccataaacttcgaaaagtggcggccaaggaaagaaacagaagattctggcgcggtntagcatggctcctaaccccgcccccaccccccagaagcggtactgaggaaagaaggtgagtcgacaaaatcctgagaattctcactaataccctccaatttggagagaagcggactgagggggtgagtaggcagcccngggaaaagtcaaggaaaaaccctcgagagtagaagcccctacgtaccaccgcgggacctcggcagaggcaggaagggccgccagggcttgccatcttccagggcnccgcgctgaattgggggaatganccgaagcccacgggagtgggatacgcccccggctaggtggagtgagccctggtacaggacatttaacgaaatctcagaagagagagcagagcccaggtcctccaacaaaggctgcacncagccccagccgagctctccccccttcccccatccccgcgccctcaggctacagaaaagtggatagaaagcaatacccagccctcaaactgtagctcagaggggaagacaaacaggtctcagataaggtgggaagggngtcaaggagaattcacccacactatatcagagcaaatagaaggtctggacagagctgcccacgttaagcatgagcaagatgaaaagaaatggcatggcaactatgcaaacatactacagcaaagaagagagagngaaaggaagaaaggagacanagcatgcaaaagacagacgaagaacccagtctggaagaaaacataacccaaggaacagaagaaaattccccgcgagtgcttcgcgctatagaanaacttaataagaacatgaattcaataaaacaagagctcaaagacgagatgataaaacaacagaatgagatgaaaagggagattgcagagctaaggaaacaaattgaggaccaaaacaacaccattacagaactaataaataaattagaaacagcaaggaacagaatagacacggctgaaaatcgaattactgacatagaggaaaggcttgagataatcacagtgaatgcagaaggaaaagacaaagagattaaagcaattagagagaagataatagatatggaggacagacaaagacgatccaacataaggataattggtgtccctgaagtagagaacccaacaaatggaacagaaaaagtattcaaagatataatacaagaaaatttccctgaaatgaaggaagaactgaatctgcagatcgaaagggcacaccgtgttccaggaaaaattgatacagaacgatcgacaccgagacatatcctggttaagttattgaacttcaaggataaagaaagaattcttcaggcatccaggcagaaaaagcaagtcacctacaagggggaaaaaatcaggctggcctcagacttctccacagcaacattcaatgccagaagacaatggagcaatgtctacaaagttctgagggaaagaaagtgtgacccaagaatnttatacccagccaagttgtcgttcaagtataaaggcaacaggcagacattctcaaacatgaaagaactcagggaatatagcacccatgagcccttcttgaaaaaactacttgacgatgaaatccagccaaccaagagatgaatcaaaataaagaactcaggaatggagaagccgtggtaaaaggactggtggtgagcactgaatccatttaaatatagaactaagactaaacaactgtgggaattatggttacagaacagaatgtaaatgttataaaccttgacaangtaaaaataatataantaacaaaaatcgggaggtgggagaggagaggtgggaggaagtgtaagagtgctaatttcctcatctttcatagcagggagtcaatcgatactgtctaaaattgaaacatgtagtttaaaaanataatgactccaacctcttaatgtttttcataatcttttttcttaaccttagagggatcttttaggaantaatatctcttgtggtgaagaaacatttatctgaagttcagcaattccttcagtttcacttcagtttctttttcttctgttaaattcaagtaaaattaaatttaatacttttnatttaaaatagcatgtatagtatgatcccatttttataaaattatttctatctatccatccatccatccatctatccttctatctgtatatatgcatagaaagatgtctggaatgatgttcaccaaatgttaacgatggttatttctgggtggtgggatttngggtgatttnttgctttcttctttgtacttttctgtattgcttgaattttttataatgagcatgtatcatttttataaaaacaataaagtnattatttttttaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 91 99.0 Highly correlated
2 ZIM3 55 87.0 Moderately correlated
3 ZNF705B 47 28.9 Weakly correlated
4 ZNF394 45 99.0 Highly correlated
5 ZNF133 43 99.0 Highly correlated
6 ZNF317 41 99.0 Highly correlated
7 ZNF766 38 43.0 Weakly correlated
8 ZFP37 33 99.0 Highly correlated
9 ZNF705D 33 28.9 Weakly correlated
10 ZNF175 31 94.0 Moderately correlated
11 ZNF680 23 28.9 Weakly correlated
12 ZNF92 23 28.9 Weakly correlated
13 ZNF263 22 180.0 Weakly correlated
14 ZNF2 17 99.0 Highly correlated
15 ZFP69B 16 99.0 Highly correlated
16 ZNF18 16 160.0 Weakly correlated
17 ZNF723 16 15.2 Weakly correlated
18 ZKSCAN8 15 160.0 Weakly correlated
19 ZNF479 15 6.4 Weakly correlated
20 ZNF589 15 28.9 Weakly correlated
21 ZNF679 14 28.9 Weakly correlated
22 ZNF792 13 94.0 Moderately correlated
23 ZNF324 12 99.0 Highly correlated
24 ZNF558 12 99.0 Highly correlated
25 ZNF597 12 94.0 Moderately correlated
26 ZKSCAN1 11 160.0 Weakly correlated
27 ZNF287 9 99.0 Highly correlated
28 ZNF528 9 43.0 Weakly correlated
29 ZNF585B 9 99.0 Highly correlated
30 ZNF75D 9 94.0 Moderately correlated
31 ZNF197 8 99.0 Highly correlated
32 ZNF202 8 160.0 Weakly correlated
33 ZNF534 8 19.6 Weakly correlated
34 ZNF583 8 99.0 Highly correlated
35 ZNF584 8 99.0 Highly correlated
36 ZNF610 8 28.9 Weakly correlated
37 ZNF701 7 28.9 Weakly correlated
38 ZNF101 6 43.0 Weakly correlated
39 ZNF136 6 74.0 Weakly correlated
40 ZNF248 6 99.0 Highly correlated
41 ZNF274 6 99.0 Highly correlated
42 ZNF441 6 43.0 Weakly correlated
43 ZNF547 6 74.0 Weakly correlated
44 ZNF8 6 99.0 Highly correlated
45 ZNF140 5 99.0 Highly correlated
46 ZNF182 5 99.0 Highly correlated
47 ZNF251 5 94.0 Moderately correlated
48 ZNF486 5 8.6 Weakly correlated
49 ZNF519 5 19.6 Weakly correlated
50 ZNF570 5 99.0 Highly correlated
51 ZNF735 5 28.9 Weakly correlated
52 ZNF823 5 43.0 Weakly correlated
53 ZFP28 4 99.0 Highly correlated
54 ZNF257 4 0.0 Weakly correlated
55 ZNF641 4 99.0 Highly correlated
56 ZNF707 4 74.0 Weakly correlated
57 ZNF793 4 99.0 Highly correlated
58 ZNF135 3 94.0 Moderately correlated
59 ZNF169 3 94.0 Moderately correlated
60 ZNF471 3 94.0 Moderately correlated
61 ZNF554 3 99.0 Highly correlated
62 ZNF283 2 99.0 Highly correlated
63 ZNF331 2 94.0 Moderately correlated
64 ZNF347 2 43.0 Weakly correlated
65 ZNF425 2 94.0 Moderately correlated
66 ZNF44 2 43.0 Weakly correlated
67 ZNF470 2 99.0 Highly correlated
68 ZNF485 2 94.0 Moderately correlated
69 ZNF506 2 28.9 Weakly correlated
70 ZNF585A 2 99.0 Highly correlated
71 ZNF677 2 99.0 Highly correlated
72 ZNF730 2 19.6 Weakly correlated
73 ZNF84 2 99.0 Highly correlated
74 ZFP1 1 99.0 Highly correlated
75 ZFP30 1 99.0 Highly correlated
76 ZFP57 1 87.0 Moderately correlated
77 ZNF10 1 99.0 Highly correlated
78 ZNF141 1 43.0 Weakly correlated
79 ZNF160 1 74.0 Weakly correlated
80 ZNF224 1 69.0 Weakly correlated
81 ZNF264 1 99.0 Highly correlated
82 ZNF273 1 28.9 Weakly correlated
83 ZNF284 1 43.0 Weakly correlated
84 ZNF28 1 28.9 Weakly correlated
85 ZNF30 1 94.0 Moderately correlated
86 ZNF334 1 99.0 Highly correlated
87 ZNF354C 1 99.0 Highly correlated
88 ZNF429 1 28.9 Weakly correlated
89 ZNF431 1 28.9 Weakly correlated
90 ZNF43 1 43.0 Weakly correlated
91 ZNF445 1 99.0 Highly correlated
92 ZNF468 1 28.9 Weakly correlated
93 ZNF490 1 43.0 Weakly correlated
94 ZNF510 1 99.0 Highly correlated
95 ZNF549 1 87.0 Moderately correlated
96 ZNF563 1 28.9 Weakly correlated
97 ZNF568 1 99.0 Highly correlated
98 ZNF586 1 43.0 Weakly correlated
99 ZNF595 1 43.0 Weakly correlated
100 ZNF607 1 43.0 Weakly correlated
101 ZNF613 1 99.0 Highly correlated
102 ZNF627 1 74.0 Weakly correlated
103 ZNF658 1 99.0 Highly correlated
104 ZNF674 1 99.0 Highly correlated
105 ZNF778 1 74.0 Weakly correlated
106 ZNF780A 1 43.0 Weakly correlated
107 ZNF85 1 28.9 Weakly correlated
108 ZNF891 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF133 32 99.0 Highly correlated
2 ZIM3 25 87.0 Moderately correlated
3 ZNF705B 14 28.9 Weakly correlated
4 ZNF723 8 15.2 Weakly correlated
5 ZNF287 8 99.0 Highly correlated
6 ZNF705D 8 28.9 Weakly correlated
7 ZNF766 6 43.0 Weakly correlated
8 ZNF534 5 19.6 Weakly correlated
9 ZNF680 5 28.9 Weakly correlated
10 ZNF75D 4 94.0 Moderately correlated
11 ZNF558 4 99.0 Highly correlated
12 ZNF597 4 94.0 Moderately correlated
13 ZNF382 4 99.0 Highly correlated
14 ZNF589 4 28.9 Weakly correlated
15 ZNF317 4 99.0 Highly correlated
16 ZNF263 3 180.0 Weakly correlated
17 ZNF585B 3 99.0 Highly correlated
18 ZNF175 3 94.0 Moderately correlated
19 ZNF701 3 28.9 Weakly correlated
20 ZNF735 3 28.9 Weakly correlated
21 ZNF248 3 99.0 Highly correlated
22 ZNF136 3 74.0 Weakly correlated
23 ZNF485 2 94.0 Moderately correlated
24 ZNF251 2 94.0 Moderately correlated
25 ZNF197 2 99.0 Highly correlated
26 ZNF101 2 43.0 Weakly correlated
27 ZNF479 2 6.4 Weakly correlated
28 ZNF570 2 99.0 Highly correlated
29 ZNF641 2 99.0 Highly correlated
30 ZNF140 2 99.0 Highly correlated
31 ZNF169 2 94.0 Moderately correlated
32 ZNF44 1 43.0 Weakly correlated
33 ZNF264 1 99.0 Highly correlated
34 ZNF679 1 28.9 Weakly correlated
35 ZFP69B 1 99.0 Highly correlated
36 ZFP37 1 99.0 Highly correlated
37 ZNF547 1 74.0 Weakly correlated
38 ZNF528 1 43.0 Weakly correlated
39 ZFP28 1 99.0 Highly correlated
40 ZNF471 1 94.0 Moderately correlated
41 ZNF257 1 0.0 Weakly correlated
42 ZNF18 1 160.0 Weakly correlated
43 ZNF677 1 99.0 Highly correlated
44 ZNF674 1 99.0 Highly correlated
45 ZNF585A 1 99.0 Highly correlated
46 ZNF202 1 160.0 Weakly correlated
47 ZNF823 1 43.0 Weakly correlated
48 ZNF792 1 94.0 Moderately correlated
49 ZNF780A 1 43.0 Weakly correlated
50 ZNF490 1 43.0 Weakly correlated
51 ZNF394 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Highly correlated
2 ZNF705B 28.9 Weakly correlated
3 ZNF705D 28.9 Weakly correlated
4 ZNF766 43.0 Weakly correlated