ZRdb KZFP & Repeats
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SINE_FRAM

  • Name
    FRAM
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000147
Description :

FRAM is a SINE that derives from a single, internally-deleted 7SL RNA.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gccgggcgcggtggcncgcgcctgtagtcccagctactcgggaggctgaggcgggaggatcgcttgagcccaggagttcgaggctgcagtgagctatgatcgcgccactgcactccagcctgggcgacagagcgagaccccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 339 99.0 Weakly correlated
2 ZNF284 244 43.0 Weakly correlated
3 ZNF263 199 180.0 Weakly correlated
4 ZNF394 179 99.0 Weakly correlated
5 ZNF2 127 99.0 Weakly correlated
6 ZFP37 115 99.0 Weakly correlated
7 ZNF18 110 160.0 Weakly correlated
8 ZNF766 109 43.0 Weakly correlated
9 ZFP69B 82 99.0 Weakly correlated
10 ZNF705B 74 28.9 Weakly correlated
11 ZKSCAN1 62 160.0 Weakly correlated
12 ZNF324 57 99.0 Weakly correlated
13 ZNF558 56 99.0 Weakly correlated
14 ZNF101 55 43.0 Weakly correlated
15 ZNF175 52 94.0 Weakly correlated
16 ZNF589 50 28.9 Weakly correlated
17 ZNF610 39 28.9 Weakly correlated
18 ZNF554 38 99.0 Weakly correlated
19 ZNF317 36 99.0 Weakly correlated
20 ZNF257 35 0.0 Weakly correlated
21 ZKSCAN8 33 160.0 Weakly correlated
22 ZNF680 33 28.9 Weakly correlated
23 ZNF705D 32 28.9 Weakly correlated
24 ZNF534 30 19.6 Weakly correlated
25 ZIM3 29 87.0 Weakly correlated
26 ZNF584 29 99.0 Weakly correlated
27 ZNF792 28 94.0 Weakly correlated
28 ZNF251 24 94.0 Weakly correlated
29 ZNF92 24 28.9 Weakly correlated
30 ZNF479 22 6.4 Weakly correlated
31 ZNF197 19 99.0 Weakly correlated
32 ZNF723 19 15.2 Weakly correlated
33 ZNF8 18 99.0 Weakly correlated
34 ZNF140 17 99.0 Weakly correlated
35 ZNF274 16 99.0 Weakly correlated
36 ZNF182 15 99.0 Weakly correlated
37 ZNF695 15 28.9 Weakly correlated
38 ZNF701 15 28.9 Weakly correlated
39 ZNF707 15 74.0 Highly correlated
40 ZFP57 14 87.0 Weakly correlated
41 ZNF202 14 160.0 Weakly correlated
42 ZNF264 14 99.0 Weakly correlated
43 ZNF506 14 28.9 Weakly correlated
44 ZNF641 14 99.0 Weakly correlated
45 ZNF75D 14 94.0 Weakly correlated
46 ZNF786 14 99.0 Weakly correlated
47 ZNF679 13 28.9 Weakly correlated
48 ZNF793 13 99.0 Weakly correlated
49 ZNF597 12 94.0 Weakly correlated
50 ZNF160 11 74.0 Highly correlated
51 ZNF547 11 74.0 Highly correlated
52 ZNF585A 11 99.0 Weakly correlated
53 ZNF136 10 74.0 Highly correlated
54 ZNF28 10 28.9 Weakly correlated
55 ZNF519 10 19.6 Weakly correlated
56 ZNF528 10 43.0 Weakly correlated
57 ZNF585B 10 99.0 Weakly correlated
58 ZNF273 9 28.9 Weakly correlated
59 ZNF441 9 43.0 Weakly correlated
60 ZNF560 9 43.0 Weakly correlated
61 ZFP90 8 99.0 Weakly correlated
62 ZNF135 8 94.0 Weakly correlated
63 ZNF282 8 319.0 Weakly correlated
64 ZNF347 8 43.0 Weakly correlated
65 ZNF544 8 0.0 Weakly correlated
66 ZNF583 8 99.0 Weakly correlated
67 ZNF671 8 94.0 Weakly correlated
68 ZNF256 7 74.0 Highly correlated
69 ZNF320 7 28.9 Weakly correlated
70 ZNF735 7 28.9 Weakly correlated
71 ZNF778 7 74.0 Highly correlated
72 ZNF141 6 43.0 Weakly correlated
73 ZNF215 6 99.0 Weakly correlated
74 ZNF253 6 19.6 Weakly correlated
75 ZNF429 6 28.9 Weakly correlated
76 ZNF514 6 94.0 Weakly correlated
77 ZNF607 6 43.0 Weakly correlated
78 ZNF726 6 28.9 Weakly correlated
79 ZNF746 6 99.0 Weakly correlated
80 ZNF84 6 99.0 Weakly correlated
81 ZNF189 5 99.0 Weakly correlated
82 ZNF20 5 43.0 Weakly correlated
83 ZNF425 5 94.0 Weakly correlated
84 ZNF460 5 74.0 Highly correlated
85 ZNF485 5 94.0 Weakly correlated
86 ZNF486 5 8.6 Weakly correlated
87 ZNF578 5 15.2 Weakly correlated
88 ZNF674 5 99.0 Weakly correlated
89 ZNF675 5 8.6 Weakly correlated
90 ZNF761 5 19.6 Weakly correlated
91 ZNF850 5 28.9 Weakly correlated
92 ZKSCAN4 4 99.0 Weakly correlated
93 ZKSCAN5 4 160.0 Weakly correlated
94 ZNF12 4 99.0 Weakly correlated
95 ZNF195 4 28.9 Weakly correlated
96 ZNF213 4 180.0 Weakly correlated
97 ZNF304 4 99.0 Weakly correlated
98 ZNF418 4 43.0 Weakly correlated
99 ZNF473 4 43.0 Weakly correlated
100 ZNF487 4 28.9 Weakly correlated
101 ZNF549 4 87.0 Weakly correlated
102 ZNF667 4 99.0 Weakly correlated
103 ZNF682 4 28.9 Weakly correlated
104 ZNF688 4 160.0 Weakly correlated
105 ZNF700 4 28.9 Weakly correlated
106 ZNF705E 4 0.0 Weakly correlated
107 ZNF729 4 8.6 Weakly correlated
108 ZNF772 4 94.0 Weakly correlated
109 ZNF813 4 28.9 Weakly correlated
110 ZNF845 4 28.9 Weakly correlated
111 ZNF93 4 8.6 Weakly correlated
112 ZFP30 3 99.0 Weakly correlated
113 ZNF100 3 28.9 Weakly correlated
114 ZNF133 3 99.0 Weakly correlated
115 ZNF169 3 94.0 Weakly correlated
116 ZNF224 3 69.0 Moderately correlated
117 ZNF234 3 99.0 Weakly correlated
118 ZNF248 3 99.0 Weakly correlated
119 ZNF286A 3 160.0 Weakly correlated
120 ZNF287 3 99.0 Weakly correlated
121 ZNF331 3 94.0 Weakly correlated
122 ZNF334 3 99.0 Weakly correlated
123 ZNF416 3 43.0 Weakly correlated
124 ZNF420 3 94.0 Weakly correlated
125 ZNF471 3 94.0 Weakly correlated
126 ZNF483 3 99.0 Weakly correlated
127 ZNF563 3 28.9 Weakly correlated
128 ZNF569 3 99.0 Weakly correlated
129 ZNF689 3 99.0 Weakly correlated
130 ZNF717 3 0.0 Weakly correlated
131 ZNF727 3 19.6 Weakly correlated
132 ZNF728 3 19.6 Weakly correlated
133 ZNF730 3 19.6 Weakly correlated
134 ZNF747 3 43.0 Weakly correlated
135 ZNF75A 3 94.0 Weakly correlated
136 ZNF765 3 8.6 Weakly correlated
137 ZNF814 3 0.0 Weakly correlated
138 ZNF81 3 99.0 Weakly correlated
139 ZNF823 3 43.0 Weakly correlated
140 ZNF878 3 43.0 Weakly correlated
141 ZFP69 2 99.0 Weakly correlated
142 ZNF114 2 28.9 Weakly correlated
143 ZNF124 2 43.0 Weakly correlated
144 ZNF177 2 94.0 Weakly correlated
145 ZNF180 2 99.0 Weakly correlated
146 ZNF221 2 74.0 Highly correlated
147 ZNF222 2 43.0 Weakly correlated
148 ZNF225 2 74.0 Highly correlated
149 ZNF230 2 28.9 Weakly correlated
150 ZNF233 2 99.0 Weakly correlated
151 ZNF250 2 99.0 Weakly correlated
152 ZNF254 2 43.0 Weakly correlated
153 ZNF267 2 43.0 Weakly correlated
154 ZNF30 2 94.0 Weakly correlated
155 ZNF333 2 99.0 Weakly correlated
156 ZNF33B 2 99.0 Weakly correlated
157 ZNF343 2 74.0 Highly correlated
158 ZNF354A 2 99.0 Weakly correlated
159 ZNF419 2 28.9 Weakly correlated
160 ZNF433 2 43.0 Weakly correlated
161 ZNF436 2 180.0 Weakly correlated
162 ZNF440 2 28.9 Weakly correlated
163 ZNF446 2 94.0 Weakly correlated
164 ZNF44 2 43.0 Weakly correlated
165 ZNF454 2 99.0 Weakly correlated
166 ZNF461 2 99.0 Weakly correlated
167 ZNF490 2 43.0 Weakly correlated
168 ZNF500 2 160.0 Weakly correlated
169 ZNF510 2 99.0 Weakly correlated
170 ZNF530 2 28.9 Weakly correlated
171 ZNF546 2 99.0 Weakly correlated
172 ZNF568 2 99.0 Weakly correlated
173 ZNF586 2 43.0 Weakly correlated
174 ZNF611 2 19.6 Weakly correlated
175 ZNF630 2 94.0 Weakly correlated
176 ZNF658 2 99.0 Weakly correlated
177 ZNF677 2 99.0 Weakly correlated
178 ZNF684 2 99.0 Weakly correlated
179 ZNF699 2 99.0 Weakly correlated
180 ZNF709 2 87.0 Weakly correlated
181 ZNF718 2 19.6 Weakly correlated
182 ZNF763 2 15.2 Weakly correlated
183 ZNF773 2 94.0 Weakly correlated
184 ZNF829 2 99.0 Weakly correlated
185 ZNF85 2 28.9 Weakly correlated
186 ZNF879 2 99.0 Weakly correlated
187 ZNF91 2 6.0 Weakly correlated
188 ZFP14 1 99.0 Weakly correlated
189 ZFP92 1 99.0 Weakly correlated
190 ZIM2 1 0.0 Weakly correlated
191 ZKSCAN2 1 180.0 Weakly correlated
192 ZNF157 1 99.0 Weakly correlated
193 ZNF205 1 180.0 Weakly correlated
194 ZNF211 1 94.0 Weakly correlated
195 ZNF214 1 99.0 Weakly correlated
196 ZNF235 1 99.0 Weakly correlated
197 ZNF25 1 99.0 Weakly correlated
198 ZNF268 1 94.0 Weakly correlated
199 ZNF302 1 43.0 Weakly correlated
200 ZNF324B 1 99.0 Weakly correlated
201 ZNF33A 1 99.0 Weakly correlated
202 ZNF350 1 99.0 Weakly correlated
203 ZNF383 1 99.0 Weakly correlated
204 ZNF431 1 28.9 Weakly correlated
205 ZNF432 1 99.0 Weakly correlated
206 ZNF443 1 19.6 Weakly correlated
207 ZNF445 1 99.0 Weakly correlated
208 ZNF45 1 99.0 Weakly correlated
209 ZNF470 1 99.0 Weakly correlated
210 ZNF480 1 43.0 Weakly correlated
211 ZNF496 1 99.0 Weakly correlated
212 ZNF543 1 99.0 Weakly correlated
213 ZNF548 1 94.0 Weakly correlated
214 ZNF550 1 94.0 Weakly correlated
215 ZNF559 1 74.0 Highly correlated
216 ZNF561 1 43.0 Weakly correlated
217 ZNF565 1 99.0 Weakly correlated
218 ZNF566 1 99.0 Weakly correlated
219 ZNF567 1 99.0 Weakly correlated
220 ZNF570 1 99.0 Weakly correlated
221 ZNF571 1 99.0 Weakly correlated
222 ZNF573 1 94.0 Weakly correlated
223 ZNF57 1 28.9 Weakly correlated
224 ZNF582 1 99.0 Weakly correlated
225 ZNF587 1 28.9 Weakly correlated
226 ZNF605 1 99.0 Weakly correlated
227 ZNF616 1 43.0 Weakly correlated
228 ZNF620 1 99.0 Weakly correlated
229 ZNF626 1 0.0 Weakly correlated
230 ZNF627 1 74.0 Highly correlated
231 ZNF649 1 28.9 Weakly correlated
232 ZNF66 1 0.0 Weakly correlated
233 ZNF69 1 28.9 Weakly correlated
234 ZNF713 1 94.0 Weakly correlated
235 ZNF716 1 19.6 Weakly correlated
236 ZNF737 1 28.9 Weakly correlated
237 ZNF776 1 43.0 Weakly correlated
238 ZNF785 1 94.0 Weakly correlated
239 ZNF791 1 87.0 Weakly correlated
240 ZNF799 1 43.0 Weakly correlated
241 ZNF7 1 99.0 Weakly correlated
242 ZNF808 1 19.6 Weakly correlated
243 ZNF816 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 230 43.0 Weakly correlated
2 ZNF263 67 180.0 Weakly correlated
3 ZNF18 32 160.0 Weakly correlated
4 ZNF257 21 0.0 Weakly correlated
5 ZNF101 18 43.0 Weakly correlated
6 ZFP37 13 99.0 Weakly correlated
7 ZNF324 13 99.0 Weakly correlated
8 ZNF182 12 99.0 Weakly correlated
9 ZNF610 10 28.9 Weakly correlated
10 ZNF534 10 19.6 Weakly correlated
11 ZNF554 10 99.0 Weakly correlated
12 ZNF506 9 28.9 Weakly correlated
13 ZNF786 9 99.0 Weakly correlated
14 ZNF135 8 94.0 Weakly correlated
15 ZNF792 7 94.0 Weakly correlated
16 ZNF519 7 19.6 Weakly correlated
17 ZNF441 6 43.0 Weakly correlated
18 ZNF140 6 99.0 Weakly correlated
19 ZFP90 6 99.0 Weakly correlated
20 ZNF695 5 28.9 Weakly correlated
21 ZNF705D 5 28.9 Weakly correlated
22 ZNF20 4 43.0 Weakly correlated
23 ZNF264 4 99.0 Weakly correlated
24 ZNF544 4 0.0 Weakly correlated
25 ZNF382 4 99.0 Weakly correlated
26 ZNF746 4 99.0 Weakly correlated
27 ZNF641 3 99.0 Weakly correlated
28 ZNF583 3 99.0 Weakly correlated
29 ZNF253 3 19.6 Weakly correlated
30 ZNF195 3 28.9 Weakly correlated
31 ZNF75D 3 94.0 Weakly correlated
32 ZNF347 3 43.0 Weakly correlated
33 ZNF607 3 43.0 Weakly correlated
34 ZNF479 3 6.4 Weakly correlated
35 ZNF705B 3 28.9 Weakly correlated
36 ZNF394 3 99.0 Weakly correlated
37 ZNF761 2 19.6 Weakly correlated
38 ZNF675 2 8.6 Weakly correlated
39 ZIM3 2 87.0 Weakly correlated
40 ZNF563 2 28.9 Weakly correlated
41 ZNF416 2 43.0 Weakly correlated
42 ZNF772 2 94.0 Weakly correlated
43 ZNF688 2 160.0 Weakly correlated
44 ZNF28 2 28.9 Weakly correlated
45 ZKSCAN4 2 99.0 Weakly correlated
46 ZNF440 2 28.9 Weakly correlated
47 ZNF2 2 99.0 Weakly correlated
48 ZNF729 2 8.6 Weakly correlated
49 ZNF487 2 28.9 Weakly correlated
50 ZNF282 2 319.0 Weakly correlated
51 ZNF334 2 99.0 Weakly correlated
52 ZNF202 2 160.0 Weakly correlated
53 ZNF814 2 0.0 Weakly correlated
54 ZNF460 2 74.0 Highly correlated
55 ZNF589 2 28.9 Weakly correlated
56 ZNF707 2 74.0 Highly correlated
57 ZNF585B 2 99.0 Weakly correlated
58 ZNF726 2 28.9 Weakly correlated
59 ZNF773 1 94.0 Weakly correlated
60 ZNF682 1 28.9 Weakly correlated
61 ZNF671 1 94.0 Weakly correlated
62 ZNF530 1 28.9 Weakly correlated
63 ZNF723 1 15.2 Weakly correlated
64 ZNF823 1 43.0 Weakly correlated
65 ZNF490 1 43.0 Weakly correlated
66 ZNF616 1 43.0 Weakly correlated
67 ZNF597 1 94.0 Weakly correlated
68 ZNF473 1 43.0 Weakly correlated
69 ZFP57 1 87.0 Weakly correlated
70 ZFP69B 1 99.0 Weakly correlated
71 ZKSCAN5 1 160.0 Weakly correlated
72 ZNF169 1 94.0 Weakly correlated
73 ZNF197 1 99.0 Weakly correlated
74 ZNF273 1 28.9 Weakly correlated
75 ZNF585A 1 99.0 Weakly correlated
76 ZNF728 1 19.6 Weakly correlated
77 ZNF850 1 28.9 Weakly correlated
78 ZNF254 1 43.0 Weakly correlated
79 ZNF433 1 43.0 Weakly correlated
80 ZNF558 1 99.0 Weakly correlated
81 ZNF445 1 99.0 Weakly correlated
82 ZNF674 1 99.0 Weakly correlated
83 ZNF679 1 28.9 Weakly correlated
84 ZNF689 1 99.0 Weakly correlated
85 ZNF763 1 15.2 Weakly correlated
86 ZNF793 1 99.0 Weakly correlated
87 ZNF251 1 94.0 Weakly correlated
88 ZNF429 1 28.9 Weakly correlated
89 ZNF514 1 94.0 Weakly correlated
90 ZNF582 1 99.0 Weakly correlated
91 ZNF213 1 180.0 Weakly correlated
92 ZNF611 1 19.6 Weakly correlated
93 ZNF727 1 19.6 Weakly correlated
94 ZNF735 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF182 99.0 Weakly correlated
2 ZNF257 0.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF441 43.0 Weakly correlated
5 ZNF554 99.0 Weakly correlated
6 ZNF792 94.0 Weakly correlated