ZRdb KZFP & Repeats
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SINE_FLAM_C

  • Name
    FLAM_C
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000144
Description :

FLAM_C is a SINE that derives from a single, internally-deleted 7SL RNA.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggaggatcgcttgagcccaggagttcgagaccagcctgggcaacatagcgagaccccgtctctaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 678 99.0 Weakly correlated
2 ZNF394 332 99.0 Weakly correlated
3 ZNF263 325 180.0 Weakly correlated
4 ZNF766 251 43.0 Weakly correlated
5 ZNF2 248 99.0 Weakly correlated
6 ZFP37 186 99.0 Weakly correlated
7 ZNF705B 174 28.9 Weakly correlated
8 ZNF18 168 160.0 Weakly correlated
9 ZFP69B 163 99.0 Weakly correlated
10 ZKSCAN1 152 160.0 Weakly correlated
11 ZNF680 145 28.9 Weakly correlated
12 ZNF101 141 43.0 Weakly correlated
13 ZNF506 139 28.9 Weakly correlated
14 ZNF589 134 28.9 Weakly correlated
15 ZNF175 121 94.0 Weakly correlated
16 ZNF558 117 99.0 Weakly correlated
17 ZNF324 110 99.0 Weakly correlated
18 ZKSCAN8 106 160.0 Weakly correlated
19 ZNF610 105 28.9 Weakly correlated
20 ZNF182 103 99.0 Weakly correlated
21 ZNF705D 100 28.9 Weakly correlated
22 ZNF317 89 99.0 Weakly correlated
23 ZIM3 86 87.0 Weakly correlated
24 ZNF257 82 0.0 Weakly correlated
25 ZNF197 81 99.0 Weakly correlated
26 ZNF534 76 19.6 Weakly correlated
27 ZNF584 72 99.0 Weakly correlated
28 ZNF479 67 6.4 Weakly correlated
29 ZNF554 56 99.0 Weakly correlated
30 ZNF251 51 94.0 Weakly correlated
31 ZNF92 50 28.9 Weakly correlated
32 ZNF792 48 94.0 Weakly correlated
33 ZNF519 46 19.6 Weakly correlated
34 ZNF679 39 28.9 Weakly correlated
35 ZNF441 38 43.0 Weakly correlated
36 ZNF8 33 99.0 Weakly correlated
37 ZNF140 31 99.0 Weakly correlated
38 ZNF793 31 99.0 Weakly correlated
39 ZNF723 30 15.2 Weakly correlated
40 ZNF287 26 99.0 Weakly correlated
41 ZNF28 26 28.9 Weakly correlated
42 ZNF75D 23 94.0 Weakly correlated
43 ZNF320 22 28.9 Weakly correlated
44 ZNF597 22 94.0 Weakly correlated
45 ZNF585A 21 99.0 Weakly correlated
46 ZNF585B 21 99.0 Weakly correlated
47 ZNF331 20 94.0 Weakly correlated
48 ZNF528 20 43.0 Weakly correlated
49 ZNF701 20 28.9 Weakly correlated
50 ZNF264 19 99.0 Weakly correlated
51 ZNF485 19 94.0 Weakly correlated
52 ZNF274 18 99.0 Weakly correlated
53 ZNF284 18 43.0 Weakly correlated
54 ZNF486 18 8.6 Weakly correlated
55 ZNF695 18 28.9 Weakly correlated
56 ZNF202 17 160.0 Weakly correlated
57 ZNF547 16 74.0 Highly correlated
58 ZNF641 15 99.0 Weakly correlated
59 ZNF273 14 28.9 Weakly correlated
60 ZNF436 13 180.0 Weakly correlated
61 ZNF490 13 43.0 Weakly correlated
62 ZNF133 12 99.0 Weakly correlated
63 ZNF135 12 94.0 Weakly correlated
64 ZNF471 12 94.0 Weakly correlated
65 ZNF707 12 74.0 Highly correlated
66 ZNF136 11 74.0 Highly correlated
67 ZNF189 11 99.0 Weakly correlated
68 ZNF429 11 28.9 Weakly correlated
69 ZNF879 11 99.0 Weakly correlated
70 ZFP57 10 87.0 Weakly correlated
71 ZNF224 10 69.0 Moderately correlated
72 ZNF549 9 87.0 Weakly correlated
73 ZNF674 9 99.0 Weakly correlated
74 ZNF84 9 99.0 Weakly correlated
75 ZFP28 8 99.0 Weakly correlated
76 ZNF169 8 94.0 Weakly correlated
77 ZNF468 8 28.9 Weakly correlated
78 ZNF730 8 19.6 Weakly correlated
79 ZNF778 8 74.0 Highly correlated
80 ZFP69 7 99.0 Weakly correlated
81 ZNF160 7 74.0 Highly correlated
82 ZNF26 7 99.0 Weakly correlated
83 ZNF282 7 319.0 Weakly correlated
84 ZNF334 7 99.0 Weakly correlated
85 ZNF460 7 74.0 Highly correlated
86 ZNF786 7 99.0 Weakly correlated
87 ZNF816 7 28.9 Weakly correlated
88 ZKSCAN5 6 160.0 Weakly correlated
89 ZNF141 6 43.0 Weakly correlated
90 ZNF248 6 99.0 Weakly correlated
91 ZNF573 6 94.0 Weakly correlated
92 ZNF675 6 8.6 Weakly correlated
93 ZNF735 6 28.9 Weakly correlated
94 ZNF10 5 99.0 Weakly correlated
95 ZNF222 5 43.0 Weakly correlated
96 ZNF33A 5 99.0 Weakly correlated
97 ZNF354A 5 99.0 Weakly correlated
98 ZNF425 5 94.0 Weakly correlated
99 ZNF671 5 94.0 Weakly correlated
100 ZNF823 5 43.0 Weakly correlated
101 ZNF845 5 28.9 Weakly correlated
102 ZNF91 5 6.0 Weakly correlated
103 ZNF230 4 28.9 Weakly correlated
104 ZNF30 4 94.0 Weakly correlated
105 ZNF530 4 28.9 Weakly correlated
106 ZNF75A 4 94.0 Weakly correlated
107 ZNF765 4 8.6 Weakly correlated
108 ZNF780A 4 43.0 Weakly correlated
109 ZNF81 4 99.0 Weakly correlated
110 ZFP30 3 99.0 Weakly correlated
111 ZFP82 3 99.0 Weakly correlated
112 ZNF124 3 43.0 Weakly correlated
113 ZNF184 3 99.0 Weakly correlated
114 ZNF211 3 94.0 Weakly correlated
115 ZNF283 3 99.0 Weakly correlated
116 ZNF343 3 74.0 Highly correlated
117 ZNF347 3 43.0 Weakly correlated
118 ZNF350 3 99.0 Weakly correlated
119 ZNF41 3 99.0 Weakly correlated
120 ZNF440 3 28.9 Weakly correlated
121 ZNF616 3 43.0 Weakly correlated
122 ZNF627 3 74.0 Highly correlated
123 ZNF667 3 99.0 Weakly correlated
124 ZNF677 3 99.0 Weakly correlated
125 RBAK 2 99.0 Weakly correlated
126 ZFP14 2 99.0 Weakly correlated
127 ZNF12 2 99.0 Weakly correlated
128 ZNF154 2 94.0 Weakly correlated
129 ZNF17 2 69.0 Moderately correlated
130 ZNF333 2 99.0 Weakly correlated
131 ZNF43 2 43.0 Weakly correlated
132 ZNF510 2 99.0 Weakly correlated
133 ZNF563 2 28.9 Weakly correlated
134 ZNF567 2 99.0 Weakly correlated
135 ZNF568 2 99.0 Weakly correlated
136 ZNF570 2 99.0 Weakly correlated
137 ZNF583 2 99.0 Weakly correlated
138 ZNF682 2 28.9 Weakly correlated
139 ZNF705E 2 0.0 Weakly correlated
140 ZNF716 2 19.6 Weakly correlated
141 ZNF77 2 87.0 Weakly correlated
142 ZNF799 2 43.0 Weakly correlated
143 ZNF808 2 19.6 Weakly correlated
144 ZNF85 2 28.9 Weakly correlated
145 ZNF878 2 43.0 Weakly correlated
146 ZFP90 1 99.0 Weakly correlated
147 ZKSCAN2 1 180.0 Weakly correlated
148 ZNF180 1 99.0 Weakly correlated
149 ZNF19 1 99.0 Weakly correlated
150 ZNF225 1 74.0 Highly correlated
151 ZNF235 1 99.0 Weakly correlated
152 ZNF250 1 99.0 Weakly correlated
153 ZNF267 1 43.0 Weakly correlated
154 ZNF286A 1 160.0 Weakly correlated
155 ZNF304 1 99.0 Weakly correlated
156 ZNF354B 1 99.0 Weakly correlated
157 ZNF383 1 99.0 Weakly correlated
158 ZNF3 1 160.0 Weakly correlated
159 ZNF418 1 43.0 Weakly correlated
160 ZNF431 1 28.9 Weakly correlated
161 ZNF44 1 43.0 Weakly correlated
162 ZNF461 1 99.0 Weakly correlated
163 ZNF470 1 99.0 Weakly correlated
164 ZNF480 1 43.0 Weakly correlated
165 ZNF543 1 99.0 Weakly correlated
166 ZNF548 1 94.0 Weakly correlated
167 ZNF550 1 94.0 Weakly correlated
168 ZNF559 1 74.0 Highly correlated
169 ZNF560 1 43.0 Weakly correlated
170 ZNF561 1 43.0 Weakly correlated
171 ZNF564 1 74.0 Highly correlated
172 ZNF565 1 99.0 Weakly correlated
173 ZNF566 1 99.0 Weakly correlated
174 ZNF571 1 99.0 Weakly correlated
175 ZNF582 1 99.0 Weakly correlated
176 ZNF586 1 43.0 Weakly correlated
177 ZNF595 1 43.0 Weakly correlated
178 ZNF605 1 99.0 Weakly correlated
179 ZNF607 1 43.0 Weakly correlated
180 ZNF611 1 19.6 Weakly correlated
181 ZNF613 1 99.0 Weakly correlated
182 ZNF630 1 94.0 Weakly correlated
183 ZNF700 1 28.9 Weakly correlated
184 ZNF726 1 28.9 Weakly correlated
185 ZNF736 1 43.0 Weakly correlated
186 ZNF763 1 15.2 Weakly correlated
187 ZNF789 1 99.0 Weakly correlated
188 ZNF850 1 28.9 Weakly correlated
189 ZNF860 1 0.0 Weakly correlated
190 ZNF880 1 28.9 Weakly correlated
191 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF506 119 28.9 Weakly correlated
2 ZNF263 110 180.0 Weakly correlated
3 ZNF182 79 99.0 Weakly correlated
4 ZNF101 67 43.0 Weakly correlated
5 ZNF18 45 160.0 Weakly correlated
6 ZNF257 40 0.0 Weakly correlated
7 ZFP37 39 99.0 Weakly correlated
8 ZNF519 37 19.6 Weakly correlated
9 ZNF610 36 28.9 Weakly correlated
10 ZNF324 25 99.0 Weakly correlated
11 ZNF792 19 94.0 Weakly correlated
12 ZNF554 19 99.0 Weakly correlated
13 ZNF479 15 6.4 Weakly correlated
14 ZNF287 15 99.0 Weakly correlated
15 ZNF140 13 99.0 Weakly correlated
16 ZNF705D 12 28.9 Weakly correlated
17 ZNF680 11 28.9 Weakly correlated
18 ZNF705B 10 28.9 Weakly correlated
19 ZNF441 9 43.0 Weakly correlated
20 ZNF534 9 19.6 Weakly correlated
21 ZNF394 9 99.0 Weakly correlated
22 ZNF382 8 99.0 Weakly correlated
23 ZNF135 8 94.0 Weakly correlated
24 ZIM3 8 87.0 Weakly correlated
25 ZNF674 8 99.0 Weakly correlated
26 ZNF695 6 28.9 Weakly correlated
27 ZNF264 5 99.0 Weakly correlated
28 ZNF585A 5 99.0 Weakly correlated
29 ZNF202 5 160.0 Weakly correlated
30 ZNF460 5 74.0 Highly correlated
31 ZNF273 5 28.9 Weakly correlated
32 ZNF485 5 94.0 Weakly correlated
33 ZNF723 4 15.2 Weakly correlated
34 ZNF641 4 99.0 Weakly correlated
35 ZNF334 4 99.0 Weakly correlated
36 ZNF675 3 8.6 Weakly correlated
37 ZNF766 3 43.0 Weakly correlated
38 ZNF793 3 99.0 Weakly correlated
39 ZNF558 3 99.0 Weakly correlated
40 ZNF28 3 28.9 Weakly correlated
41 ZNF679 2 28.9 Weakly correlated
42 ZFP57 2 87.0 Weakly correlated
43 ZFP69B 2 99.0 Weakly correlated
44 ZNF468 2 28.9 Weakly correlated
45 ZKSCAN1 2 160.0 Weakly correlated
46 ZNF331 2 94.0 Weakly correlated
47 ZNF169 2 94.0 Weakly correlated
48 ZNF26 2 99.0 Weakly correlated
49 ZNF429 2 28.9 Weakly correlated
50 ZNF75D 2 94.0 Weakly correlated
51 ZNF251 2 94.0 Weakly correlated
52 ZNF701 2 28.9 Weakly correlated
53 ZNF92 2 28.9 Weakly correlated
54 ZNF573 2 94.0 Weakly correlated
55 ZNF425 2 94.0 Weakly correlated
56 ZNF225 1 74.0 Highly correlated
57 ZNF2 1 99.0 Weakly correlated
58 ZNF584 1 99.0 Weakly correlated
59 ZNF549 1 87.0 Weakly correlated
60 ZNF530 1 28.9 Weakly correlated
61 ZNF282 1 319.0 Weakly correlated
62 ZFP69 1 99.0 Weakly correlated
63 ZNF283 1 99.0 Weakly correlated
64 ZNF343 1 74.0 Highly correlated
65 ZNF84 1 99.0 Weakly correlated
66 ZNF816 1 28.9 Weakly correlated
67 ZKSCAN5 1 160.0 Weakly correlated
68 ZKSCAN8 1 160.0 Weakly correlated
69 ZNF141 1 43.0 Weakly correlated
70 ZNF471 1 94.0 Weakly correlated
71 ZNF284 1 43.0 Weakly correlated
72 ZNF823 1 43.0 Weakly correlated
73 ZFP30 1 99.0 Weakly correlated
74 ZNF585B 1 99.0 Weakly correlated
75 ZNF589 1 28.9 Weakly correlated
76 ZNF75A 1 94.0 Weakly correlated
77 ZNF597 1 94.0 Weakly correlated
78 ZNF616 1 43.0 Weakly correlated
79 ZNF175 1 94.0 Weakly correlated
80 ZNF197 1 99.0 Weakly correlated
81 ZNF320 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF182 99.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF287 99.0 Weakly correlated
6 ZNF506 28.9 Weakly correlated
7 ZNF695 28.9 Weakly correlated
8 ZNF792 94.0 Weakly correlated