ZRdb KZFP & Repeats
...

SINE_FLAM_A

  • Name
    FLAM_A
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000143
Description :

FLAM_A is a SINE that derives from a single, internally-deleted 7SL RNA.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gccgggcgcggtggcgcgcgcctgtagtcccagctactcgggaggctgaggcgggaggatcgcttgagcccaggagttcgagaccagcctgggcaacatagcgagaccccgtctctaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 345 99.0 Weakly correlated
2 ZNF394 250 99.0 Weakly correlated
3 ZNF263 180 180.0 Weakly correlated
4 ZFP37 99 99.0 Weakly correlated
5 ZNF2 88 99.0 Weakly correlated
6 ZNF705B 77 28.9 Weakly correlated
7 ZNF766 71 43.0 Weakly correlated
8 ZNF680 64 28.9 Weakly correlated
9 ZFP69B 59 99.0 Weakly correlated
10 ZIM3 59 87.0 Weakly correlated
11 ZNF101 59 43.0 Weakly correlated
12 ZNF558 56 99.0 Weakly correlated
13 ZNF705D 55 28.9 Weakly correlated
14 ZNF18 53 160.0 Weakly correlated
15 ZNF182 44 99.0 Weakly correlated
16 ZNF324 44 99.0 Weakly correlated
17 ZNF175 41 94.0 Weakly correlated
18 ZNF257 40 0.0 Weakly correlated
19 ZNF479 40 6.4 Weakly correlated
20 ZNF589 40 28.9 Weakly correlated
21 ZKSCAN1 39 160.0 Weakly correlated
22 ZNF317 37 99.0 Weakly correlated
23 ZKSCAN8 36 160.0 Weakly correlated
24 ZNF610 32 28.9 Weakly correlated
25 ZNF534 29 19.6 Weakly correlated
26 ZNF554 28 99.0 Weakly correlated
27 ZNF251 27 94.0 Weakly correlated
28 ZNF723 27 15.2 Weakly correlated
29 ZNF197 26 99.0 Weakly correlated
30 ZNF679 26 28.9 Weakly correlated
31 ZNF441 24 43.0 Weakly correlated
32 ZNF28 23 28.9 Weakly correlated
33 ZNF140 21 99.0 Weakly correlated
34 ZNF584 20 99.0 Weakly correlated
35 ZNF506 19 28.9 Weakly correlated
36 ZNF92 18 28.9 Weakly correlated
37 ZNF793 17 99.0 Weakly correlated
38 ZNF133 15 99.0 Weakly correlated
39 ZNF547 13 74.0 Highly correlated
40 ZNF264 11 99.0 Weakly correlated
41 ZNF490 11 43.0 Weakly correlated
42 ZNF528 11 43.0 Weakly correlated
43 ZNF597 11 94.0 Weakly correlated
44 ZNF792 11 94.0 Weakly correlated
45 ZNF8 11 99.0 Weakly correlated
46 ZFP28 10 99.0 Weakly correlated
47 ZNF136 10 74.0 Highly correlated
48 ZNF429 10 28.9 Weakly correlated
49 ZNF202 9 160.0 Weakly correlated
50 ZNF287 9 99.0 Weakly correlated
51 ZNF485 9 94.0 Weakly correlated
52 ZNF549 9 87.0 Weakly correlated
53 ZNF486 8 8.6 Weakly correlated
54 ZNF519 8 19.6 Weakly correlated
55 ZNF585B 8 99.0 Weakly correlated
56 ZNF695 8 28.9 Weakly correlated
57 ZNF701 8 28.9 Weakly correlated
58 ZNF707 8 74.0 Highly correlated
59 ZNF75D 8 94.0 Weakly correlated
60 ZNF274 7 99.0 Weakly correlated
61 ZNF471 7 94.0 Weakly correlated
62 ZFP57 6 87.0 Weakly correlated
63 ZNF284 6 43.0 Weakly correlated
64 ZNF468 6 28.9 Weakly correlated
65 ZNF585A 6 99.0 Weakly correlated
66 ZNF641 6 99.0 Weakly correlated
67 ZNF674 6 99.0 Weakly correlated
68 ZNF682 6 28.9 Weakly correlated
69 ZNF84 6 99.0 Weakly correlated
70 ZNF160 5 74.0 Highly correlated
71 ZNF26 5 99.0 Weakly correlated
72 ZNF273 5 28.9 Weakly correlated
73 ZNF320 5 28.9 Weakly correlated
74 ZNF425 5 94.0 Weakly correlated
75 ZNF778 5 74.0 Highly correlated
76 ZNF10 4 99.0 Weakly correlated
77 ZNF224 4 69.0 Moderately correlated
78 ZNF30 4 94.0 Weakly correlated
79 ZNF343 4 74.0 Highly correlated
80 ZNF460 4 74.0 Highly correlated
81 ZNF605 4 99.0 Weakly correlated
82 ZNF611 4 19.6 Weakly correlated
83 ZNF627 4 74.0 Highly correlated
84 ZNF780A 4 43.0 Weakly correlated
85 ZNF81 4 99.0 Weakly correlated
86 ZNF85 4 28.9 Weakly correlated
87 ZNF17 3 69.0 Moderately correlated
88 ZNF211 3 94.0 Weakly correlated
89 ZNF248 3 99.0 Weakly correlated
90 ZNF282 3 319.0 Weakly correlated
91 ZNF33A 3 99.0 Weakly correlated
92 ZNF354A 3 99.0 Weakly correlated
93 ZNF41 3 99.0 Weakly correlated
94 ZNF567 3 99.0 Weakly correlated
95 ZNF616 3 43.0 Weakly correlated
96 ZNF677 3 99.0 Weakly correlated
97 ZNF735 3 28.9 Weakly correlated
98 ZNF823 3 43.0 Weakly correlated
99 ZNF91 3 6.0 Weakly correlated
100 ZFP69 2 99.0 Weakly correlated
101 ZKSCAN5 2 160.0 Weakly correlated
102 ZNF135 2 94.0 Weakly correlated
103 ZNF157 2 99.0 Weakly correlated
104 ZNF169 2 94.0 Weakly correlated
105 ZNF189 2 99.0 Weakly correlated
106 ZNF222 2 43.0 Weakly correlated
107 ZNF250 2 99.0 Weakly correlated
108 ZNF334 2 99.0 Weakly correlated
109 ZNF484 2 99.0 Weakly correlated
110 ZNF582 2 99.0 Weakly correlated
111 ZNF583 2 99.0 Weakly correlated
112 ZNF586 2 43.0 Weakly correlated
113 ZNF587 2 28.9 Weakly correlated
114 ZNF613 2 99.0 Weakly correlated
115 ZNF671 2 94.0 Weakly correlated
116 ZNF675 2 8.6 Weakly correlated
117 ZNF681 2 28.9 Weakly correlated
118 ZNF786 2 99.0 Weakly correlated
119 ZNF879 2 99.0 Weakly correlated
120 PRDM9 1 0.0 Weakly correlated
121 ZFP1 1 99.0 Weakly correlated
122 ZFP30 1 99.0 Weakly correlated
123 ZFP82 1 99.0 Weakly correlated
124 ZFP90 1 99.0 Weakly correlated
125 ZKSCAN2 1 180.0 Weakly correlated
126 ZNF12 1 99.0 Weakly correlated
127 ZNF132 1 94.0 Weakly correlated
128 ZNF141 1 43.0 Weakly correlated
129 ZNF154 1 94.0 Weakly correlated
130 ZNF177 1 94.0 Weakly correlated
131 ZNF181 1 94.0 Weakly correlated
132 ZNF225 1 74.0 Highly correlated
133 ZNF230 1 28.9 Weakly correlated
134 ZNF283 1 99.0 Weakly correlated
135 ZNF286A 1 160.0 Weakly correlated
136 ZNF347 1 43.0 Weakly correlated
137 ZNF417 1 28.9 Weakly correlated
138 ZNF420 1 94.0 Weakly correlated
139 ZNF436 1 180.0 Weakly correlated
140 ZNF43 1 43.0 Weakly correlated
141 ZNF440 1 28.9 Weakly correlated
142 ZNF44 1 43.0 Weakly correlated
143 ZNF483 1 99.0 Weakly correlated
144 ZNF559 1 74.0 Highly correlated
145 ZNF560 1 43.0 Weakly correlated
146 ZNF568 1 99.0 Weakly correlated
147 ZNF571 1 99.0 Weakly correlated
148 ZNF596 1 94.0 Weakly correlated
149 ZNF626 1 0.0 Weakly correlated
150 ZNF649 1 28.9 Weakly correlated
151 ZNF727 1 19.6 Weakly correlated
152 ZNF730 1 19.6 Weakly correlated
153 ZNF75A 1 94.0 Weakly correlated
154 ZNF780B 1 74.0 Highly correlated
155 ZNF813 1 28.9 Weakly correlated
156 ZNF816 1 28.9 Weakly correlated
157 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 66 180.0 Weakly correlated
2 ZNF182 32 99.0 Weakly correlated
3 ZNF101 29 43.0 Weakly correlated
4 ZNF257 22 0.0 Weakly correlated
5 ZNF140 15 99.0 Weakly correlated
6 ZNF394 14 99.0 Weakly correlated
7 ZNF610 13 28.9 Weakly correlated
8 ZNF324 11 99.0 Weakly correlated
9 ZNF479 10 6.4 Weakly correlated
10 ZNF506 8 28.9 Weakly correlated
11 ZNF441 7 43.0 Weakly correlated
12 ZIM3 6 87.0 Weakly correlated
13 ZNF519 5 19.6 Weakly correlated
14 ZNF264 5 99.0 Weakly correlated
15 ZNF792 4 94.0 Weakly correlated
16 ZNF287 4 99.0 Weakly correlated
17 ZNF705D 4 28.9 Weakly correlated
18 ZNF382 4 99.0 Weakly correlated
19 ZNF460 4 74.0 Highly correlated
20 ZNF534 4 19.6 Weakly correlated
21 ZNF18 4 160.0 Weakly correlated
22 ZFP37 3 99.0 Weakly correlated
23 ZNF585B 3 99.0 Weakly correlated
24 ZNF793 3 99.0 Weakly correlated
25 ZNF705B 3 28.9 Weakly correlated
26 ZNF641 3 99.0 Weakly correlated
27 ZNF202 3 160.0 Weakly correlated
28 ZNF597 2 94.0 Weakly correlated
29 ZNF680 2 28.9 Weakly correlated
30 ZNF558 2 99.0 Weakly correlated
31 ZKSCAN5 2 160.0 Weakly correlated
32 ZNF135 2 94.0 Weakly correlated
33 ZNF823 2 43.0 Weakly correlated
34 ZNF317 2 99.0 Weakly correlated
35 ZNF485 1 94.0 Weakly correlated
36 ZFP28 1 99.0 Weakly correlated
37 ZNF626 1 0.0 Weakly correlated
38 ZNF616 1 43.0 Weakly correlated
39 ZNF250 1 99.0 Weakly correlated
40 ZNF273 1 28.9 Weakly correlated
41 ZNF28 1 28.9 Weakly correlated
42 ZNF440 1 28.9 Weakly correlated
43 ZFP69B 1 99.0 Weakly correlated
44 ZNF343 1 74.0 Highly correlated
45 ZNF528 1 43.0 Weakly correlated
46 ZNF175 1 94.0 Weakly correlated
47 ZNF723 1 15.2 Weakly correlated
48 ZNF674 1 99.0 Weakly correlated
49 ZNF675 1 8.6 Weakly correlated
50 ZNF707 1 74.0 Highly correlated
51 ZNF695 1 28.9 Weakly correlated
52 ZNF30 1 94.0 Weakly correlated
53 ZNF468 1 28.9 Weakly correlated
54 ZNF587 1 28.9 Weakly correlated
55 ZNF282 1 319.0 Weakly correlated
56 ZNF596 1 94.0 Weakly correlated
57 ZNF611 1 19.6 Weakly correlated
58 ZNF671 1 94.0 Weakly correlated
59 ZNF679 1 28.9 Weakly correlated
60 ZNF735 1 28.9 Weakly correlated
61 ZNF567 1 99.0 Weakly correlated
62 ZNF425 1 94.0 Weakly correlated
63 ZNF132 1 94.0 Weakly correlated
64 ZNF141 1 43.0 Weakly correlated
65 ZNF490 1 43.0 Weakly correlated
66 ZNF284 1 43.0 Weakly correlated
67 ZNF75D 1 94.0 Weakly correlated
68 ZNF2 1 99.0 Weakly correlated
69 ZNF33A 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF182 99.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated