ZRdb KZFP & Repeats
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SINE_FAM

  • Name
    FAM
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0000142
Description :

FAM is a SINE that derives from a single, internally-deleted 7SL RNA.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gccgggcgcggtggcgcgcgcctgtagtcccagctactcgggaggctgaggcgggaggatcgcttgagcccaggagttcgaggctgtagtgcgctatgatcgcgcctgtgaatagccactgcactccagcctgggcaacatagcgagaccccgtctctnaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 151 99.0 Weakly correlated
2 ZNF263 68 180.0 Weakly correlated
3 ZNF394 52 99.0 Weakly correlated
4 ZNF18 26 160.0 Weakly correlated
5 ZNF705B 25 28.9 Weakly correlated
6 ZNF2 23 99.0 Weakly correlated
7 ZNF257 22 0.0 Weakly correlated
8 ZFP37 20 99.0 Weakly correlated
9 ZNF766 20 43.0 Weakly correlated
10 ZIM3 18 87.0 Highly correlated
11 ZFP69B 17 99.0 Weakly correlated
12 ZNF101 17 43.0 Weakly correlated
13 ZNF317 17 99.0 Weakly correlated
14 ZNF479 16 6.4 Weakly correlated
15 ZNF558 14 99.0 Weakly correlated
16 ZNF680 13 28.9 Weakly correlated
17 ZNF705D 13 28.9 Weakly correlated
18 ZNF589 11 28.9 Weakly correlated
19 ZNF175 10 94.0 Weakly correlated
20 ZNF324 10 99.0 Weakly correlated
21 ZNF486 10 8.6 Weakly correlated
22 ZKSCAN1 9 160.0 Weakly correlated
23 ZNF251 9 94.0 Weakly correlated
24 ZNF554 9 99.0 Weakly correlated
25 ZNF723 9 15.2 Weakly correlated
26 ZNF793 9 99.0 Weakly correlated
27 ZFP28 8 99.0 Weakly correlated
28 ZNF534 8 19.6 Weakly correlated
29 ZNF585A 7 99.0 Weakly correlated
30 ZNF197 6 99.0 Weakly correlated
31 ZNF284 6 43.0 Weakly correlated
32 ZNF28 6 28.9 Weakly correlated
33 ZNF610 6 28.9 Weakly correlated
34 ZNF679 6 28.9 Weakly correlated
35 ZNF695 6 28.9 Weakly correlated
36 ZNF701 6 28.9 Weakly correlated
37 ZNF140 5 99.0 Weakly correlated
38 ZNF264 5 99.0 Weakly correlated
39 ZNF287 5 99.0 Weakly correlated
40 ZNF506 5 28.9 Weakly correlated
41 ZNF584 5 99.0 Weakly correlated
42 ZNF597 5 94.0 Weakly correlated
43 ZNF75D 5 94.0 Weakly correlated
44 ZNF84 5 99.0 Weakly correlated
45 ZNF8 5 99.0 Weakly correlated
46 ZNF92 5 28.9 Weakly correlated
47 ZFP57 4 87.0 Highly correlated
48 ZNF182 4 99.0 Weakly correlated
49 ZNF441 4 43.0 Weakly correlated
50 ZNF707 4 74.0 Moderately correlated
51 ZNF735 4 28.9 Weakly correlated
52 ZKSCAN8 3 160.0 Weakly correlated
53 ZNF136 3 74.0 Moderately correlated
54 ZNF17 3 69.0 Weakly correlated
55 ZNF30 3 94.0 Weakly correlated
56 ZNF44 3 43.0 Weakly correlated
57 ZNF519 3 19.6 Weakly correlated
58 ZNF528 3 43.0 Weakly correlated
59 ZNF585B 3 99.0 Weakly correlated
60 ZNF674 3 99.0 Weakly correlated
61 ZNF792 3 94.0 Weakly correlated
62 ZFP69 2 99.0 Weakly correlated
63 ZNF169 2 94.0 Weakly correlated
64 ZNF282 2 319.0 Weakly correlated
65 ZNF331 2 94.0 Weakly correlated
66 ZNF429 2 28.9 Weakly correlated
67 ZNF440 2 28.9 Weakly correlated
68 ZNF468 2 28.9 Weakly correlated
69 ZNF485 2 94.0 Weakly correlated
70 ZNF490 2 43.0 Weakly correlated
71 ZNF563 2 28.9 Weakly correlated
72 ZNF91 2 6.0 Weakly correlated
73 ZNF93 2 8.6 Weakly correlated
74 ZFP90 1 99.0 Weakly correlated
75 ZNF10 1 99.0 Weakly correlated
76 ZNF135 1 94.0 Weakly correlated
77 ZNF141 1 43.0 Weakly correlated
78 ZNF160 1 74.0 Moderately correlated
79 ZNF202 1 160.0 Weakly correlated
80 ZNF211 1 94.0 Weakly correlated
81 ZNF222 1 43.0 Weakly correlated
82 ZNF224 1 69.0 Weakly correlated
83 ZNF225 1 74.0 Moderately correlated
84 ZNF274 1 99.0 Weakly correlated
85 ZNF304 1 99.0 Weakly correlated
86 ZNF425 1 94.0 Weakly correlated
87 ZNF432 1 99.0 Weakly correlated
88 ZNF460 1 74.0 Moderately correlated
89 ZNF471 1 94.0 Weakly correlated
90 ZNF543 1 99.0 Weakly correlated
91 ZNF547 1 74.0 Moderately correlated
92 ZNF549 1 87.0 Highly correlated
93 ZNF559 1 74.0 Moderately correlated
94 ZNF570 1 99.0 Weakly correlated
95 ZNF573 1 94.0 Weakly correlated
96 ZNF607 1 43.0 Weakly correlated
97 ZNF616 1 43.0 Weakly correlated
98 ZNF626 1 0.0 Weakly correlated
99 ZNF641 1 99.0 Weakly correlated
100 ZNF675 1 8.6 Weakly correlated
101 ZNF705E 1 0.0 Weakly correlated
102 ZNF730 1 19.6 Weakly correlated
103 ZNF765 1 8.6 Weakly correlated
104 ZNF778 1 74.0 Moderately correlated
105 ZNF816 1 28.9 Weakly correlated
106 ZNF823 1 43.0 Weakly correlated
107 ZNF846 1 74.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 22 180.0 Weakly correlated
2 ZNF257 11 0.0 Weakly correlated
3 ZNF18 7 160.0 Weakly correlated
4 ZNF101 6 43.0 Weakly correlated
5 ZNF585A 5 99.0 Weakly correlated
6 ZNF287 4 99.0 Weakly correlated
7 ZNF610 4 28.9 Weakly correlated
8 ZNF182 4 99.0 Weakly correlated
9 ZNF479 4 6.4 Weakly correlated
10 ZNF284 3 43.0 Weakly correlated
11 ZNF75D 2 94.0 Weakly correlated
12 ZNF705B 2 28.9 Weakly correlated
13 ZNF674 2 99.0 Weakly correlated
14 ZNF506 2 28.9 Weakly correlated
15 ZNF792 2 94.0 Weakly correlated
16 ZNF519 2 19.6 Weakly correlated
17 ZIM3 2 87.0 Highly correlated
18 ZNF140 2 99.0 Weakly correlated
19 ZNF441 2 43.0 Weakly correlated
20 ZNF846 1 74.0 Moderately correlated
21 ZNF730 1 19.6 Weakly correlated
22 ZNF701 1 28.9 Weakly correlated
23 ZNF695 1 28.9 Weakly correlated
24 ZFP57 1 87.0 Highly correlated
25 ZNF573 1 94.0 Weakly correlated
26 ZNF534 1 19.6 Weakly correlated
27 ZKSCAN1 1 160.0 Weakly correlated
28 ZNF135 1 94.0 Weakly correlated
29 ZNF141 1 43.0 Weakly correlated
30 ZNF225 1 74.0 Moderately correlated
31 ZNF169 1 94.0 Weakly correlated
32 ZNF486 1 8.6 Weakly correlated
33 ZNF440 1 28.9 Weakly correlated
34 ZNF382 1 99.0 Weakly correlated
35 ZNF324 1 99.0 Weakly correlated
36 ZNF394 1 99.0 Weakly correlated
37 ZNF793 1 99.0 Weakly correlated
38 ZNF44 1 43.0 Weakly correlated
39 ZNF282 1 319.0 Weakly correlated
40 ZNF765 1 8.6 Weakly correlated
41 ZNF197 1 99.0 Weakly correlated
42 ZNF707 1 74.0 Moderately correlated
43 ZNF705D 1 28.9 Weakly correlated
44 ZNF641 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated