ZRdb KZFP & Repeats
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LTR_ERVL47

  • Name
    ERVL47
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000119
Description :

Associated with LTR47B2 LTRs. ORF coordinates are roughly: Gag(234-1559), Pol (1560-4955).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aatggcgagccagccaggaggagccngggaaccaaagtatgggcaaggggaaggaagcatccgtgggggaaatcccggggcggccctcctcatctatgtggggtggtgttgcccatttgctagatgcctgtggaccaccgcgtgagtacggggacgccccgaaaacgccggagggtctagaangcttgttagtagaaagccgtatgactcactgtggtaaggaaggtcgcnaggcggcggcaacagtgggttngccgctgttatggnctgtgcgagtggccacagaagcgcaggtagcagctgaggcgagggtaggaaagctagagaaagaattacagttagaaagggatatgagaacttccacgtctgtgttagcgtctggtttggtggataagctcgaaactcaggaggcacagttggaaaccgtagcctgccgctttgtgcggctgggagggaggaagctgcgccggccgaaagtgcgggctgtccttgccaaaccggactgggatgcnaanacctggaattcttgggaaccaactagtgagtcagatgangacatagaggttanctcagaggaggaggataattatcctccccttttgagagcgagaccgctcatgcagcggaaagcaaaagcccaacacatgcagccgggcaataacggacagccttttcaggaaaccttaactgtccgagagtacacctcggcaggattattggacatagcaaaaacttttaaacagctgccgagagaaagcttagccacatggatggtgcggctatgggacaccggtggggatggcatctccctagcagggagtgaagctgaaaaaatgagtaatataaccacccatccngctttgagacagcatttgcataatgctagaactgtcgagggnaatcatagccttatggactggattatcctggccatgagagaggcttggccnaatgaaggggacttcccgggtcagaccccggcatggcgatctctggaggaagcgcagagcgatttangggagttgggcatgcgncaggccatctatgcccagcaatttgnaggaccagataaggctgtgtttaccgtgggcatgaaaaataagttgttacaaagtgccccccgggagtggcatggccctctcatatccctcttgagcccccttgtgggacaagatgtatatgacgtgggggaagccatnnctgatcttggagaaactgaaaagggaagagataaggtccgactggttactaaaggaaaagggaaaaagggagaaaccaagtctgctggactgaaaaagggaggtcaaaaaggcccagttaggattaccaggaaacaaatgtggtatgatctgatctcagctggggtagacaaagagaaaatagaccggcaacccaatgccatattagtgggcctttggaaagacctgactcccgatcaacagtttagaccccttcctagtgccccaccagaagagggagaaggagaagaagaaactccgcgtaaaagaaccccaatctctgcgttccaggggtggactcctccccagcctagagactaggggtggggccaaggttgcctccgtgtangagcaatagggggcgaccagaggccccatgtggagctcacaatctattggagtccaaaaaacaagcagagaaccttagctttagtgggcacaggtgcagaatgcaccttaattcatggaaatccagagagacaccctggtaagtgggcagctatagatggttacggggggcgaacaatccgagtgaaacaaactcctctcctccttggtnttgggcggagtccccccgcttactntactgtctttatctcacctattccagaaaacatcttgggtatggatgtccttttaggatgcactttacaaacatctgtgggggaattccacctatgagtttgggcggtaaaggctattttaagaggggaagcaaaatgggaacctgtacacctccctcccccacggcgtattgttaatgtgaaacaataccatcttcctggtgggatagaagaaatcacagccaccatacaggaactggccaaagttaatattatncggccagcccagagtcccttcaacagtcctgtatggccggtaagaaaacctgatggcacctggcacatgacagtagactaccgggaactaaataaggtggttcccgagatacacgctgctgtgcctaatataactcaagtgatagagcaaataatacaaaatataggcacttatcatgctgtgttagatttggctaatgccttcttcagcatccctttacaccctgactcgcaggaccaatttgcttttacttggaatggccaacaatggacattccaagtgttgccccagggntatctacanagccccactatttgtcatggaatgattgctagagatttaactttatgtccactgccacctgctgttaaacagtttcattacattgatgatattatgctaacctctgaagacttgtcattgctacagcaacaccttgatgcattgtgcacccttctccaatccagaggatgggccatcaacccgcaaaagatacaaggcccaggaccggctgtaaagttcctaggggtcacttggtcgggtaagacacgccttatcccaggcatagtcattgacaaaatacaacaattttccatgcctaaaacagttaaacagttacaaagtttcctaggtcttttgggatattggcgggcttttattccacatttagctcaatgtttgcgtcccctataccgactagtaaagaagggatctagttggtgctgggataaagaacaagaggaagcatttgagaaggctaaantattagtggctcgggcacaagccttaggttccccccttcccgggntaccgntntctttggatgtgaccataagccctgaggggaccagctgggccctcgggcaagtccagcatgggaaagcggttcccctaggattctggtcacanctatggaagggcgctgaaacccgctattccccgattgaacaacgggtcctgggggtatanaaggccttgcggcaagttgaacccgtaactgccgctttnccggtaacagngaaaacgggtctccctatnaagggctgganagaagggttgtttnccaggcctgnntcagctattgcccaggcctccactttacaaaantggcatgcanacctgcaacaacgtagcgccctctccacgagtcccttgggagatgaactgcatgctntcttagggccagtacactatgagaccagtgctgcccctattgtggagcccccacgggggatgcctccgatgntacacgaaggcacggcccccattcctgaaaacgcttggtactcggatgggtnnagccgaggtaacccttgtgtatggacggcagtagctgtacaaccgcagacagatactatctggtttgagatgggaatgcagcaaagcagtcaatgggcagaactccgagctgcatggttggtttgtacccatgagccatggcctatagttctctgtacagatagttgggcagtatttaagggtcttacaacttggcttgcccagtgggcccgggatgactggcatgtactttaaaaacccttatggggagctgccatgtggaaagacatttgggaaaggctacaagaacccactgcgagcctaattgtgtatcatgtttcagcacactggtcagattcacctcccggtaacatggaggctgataccctagcaaaaattagaacactggctccctcgcaatcntctgagctagctgattgggtacataaacacagtgggcatcgcagtgcacgagtgggctggcaaatagcaaagggagcaggattgcccctccgctatgcagatttagcggcggcagtaacaaactgcttagtttgctcccgcctgcgcccccgccgcatcccacatacacctggacacatacataagacagccgcccctgtgagagactggcagatagactacatcggacccctgccagtaagcttgggacaaaagtatgcactaacatgtgtagacactgccacgggattgttgcaggccttcccttgcaaaagggcaaaccaaacagccaccattaagggcttggagcaactcagtgtcatgtatggataccctcgatgcattgatagcgaccgaggcacgcatttcactggacatgatgtccaagattgggcacatgaaaaggatatagaccggagatttcacttgccatataatccccaagcggcagggttgattgaaaggaaaaatggcattttgaaggcacaactgcgagcactttcacaatccaataccttgcatgggtgggcgaaggttttgcctcaagccattagaaaccttaattcggttgagacaaatacggggctggcaccataccaatgactcgggaccaccgcagaggagggtccattaaccatagttgtaaagaaagtccgaccagacgcatttctaccggagctgataaaaggccaatggcaaatgttatttgggactccccaagaccttgagccaggggaggggacacttgaatgggggttggactggcaacttcccccaggttggatagggtatttcttgccagagagcgaggaattccccggccaactaaagtggtctccgttgatcctgttggagtctgggccaaaacgctccacataccaatacactggaacacggccccttttaaagggcactctggtcggccgtttgacatggtcctttgctgcccctgtaaccttnacagataataccggcaccttcgcccttaggcaacatgtttggtatgcacccccagcccataatccttnggctgcctatgtcctaactaacagagatgaagctaccacagtcattttgcttgatggggaagaactgccccgccaagtacctactaaacacttgtatttccgcccatagtcttctgttcctgttgctgctctgccctacaaaagcctcttggtttggatcctggggaacatggtggcaaaaggcattattaattctgtgtcttatacttggcataggtatcattgcctgttgttgtctgtattgttgctgcggcctctgcttacaagtagaaaacaaattgatgcaacgtgtcacccacgccatgaaatgactgcagcacccctcncctctaaaggctcagggaccatcgcggaagaggngggcgcgtgagattgtaagagccggattagaggggtggag
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 9 99.0 Weakly correlated
2 ZNF723 7 15.2 Weakly correlated
3 ZNF766 6 43.0 Weakly correlated
4 ZNF2 6 99.0 Weakly correlated
5 ZNF394 6 99.0 Weakly correlated
6 ZFP37 4 99.0 Weakly correlated
7 ZNF175 4 94.0 Weakly correlated
8 ZNF263 4 180.0 Weakly correlated
9 ZNF589 4 28.9 Weakly correlated
10 ZKSCAN8 3 160.0 Weakly correlated
11 ZNF251 3 94.0 Weakly correlated
12 ZNF28 3 28.9 Weakly correlated
13 ZNF320 3 28.9 Weakly correlated
14 ZNF778 2 74.0 Highly correlated
15 ZNF701 2 28.9 Weakly correlated
16 ZNF610 2 28.9 Weakly correlated
17 ZKSCAN1 2 160.0 Weakly correlated
18 ZNF101 2 43.0 Weakly correlated
19 ZNF317 2 99.0 Weakly correlated
20 ZNF197 2 99.0 Weakly correlated
21 ZNF324 2 99.0 Weakly correlated
22 ZNF680 1 28.9 Weakly correlated
23 ZNF736 1 43.0 Weakly correlated
24 ZNF157 1 99.0 Weakly correlated
25 ZNF705D 1 28.9 Weakly correlated
26 ZNF705B 1 28.9 Weakly correlated
27 ZNF18 1 160.0 Weakly correlated
28 ZNF700 1 28.9 Weakly correlated
29 ZNF679 1 28.9 Weakly correlated
30 ZNF585A 1 99.0 Weakly correlated
31 ZNF584 1 99.0 Weakly correlated
32 ZNF554 1 99.0 Weakly correlated
33 ZNF519 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 5 15.2 Weakly correlated
2 ZNF263 2 180.0 Weakly correlated
3 ZNF157 1 99.0 Weakly correlated
4 ZNF679 1 28.9 Weakly correlated
5 ZNF680 1 28.9 Weakly correlated
6 ZNF705D 1 28.9 Weakly correlated
7 ZNF584 1 99.0 Weakly correlated
8 ZNF701 1 28.9 Weakly correlated
9 ZNF705B 1 28.9 Weakly correlated
10 ZNF317 1 99.0 Weakly correlated
11 ZNF320 1 28.9 Weakly correlated
12 ZNF585A 1 99.0 Weakly correlated
13 ZNF382 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats