ZRdb KZFP & Repeats
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LTR_ERVL

  • Name
    ERVL
  • Repbase
    ERVL
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000118
Description :

Internal sequence of endogenous retrovirus ancestral to HERVL. ERVLrepresents a subfamily active in a common ancestor of most or allprimates, and possibly outside of primates.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aattttggtaccaagagtgtctagaggaacagaattttaaggatgggttttctgaattggttttggggnttcnggaattggctncctaatntgattagatttaaagacgctaatgactctatttccagtagtaaagagagcactgatagtccatggcatancgnnnnatnnnacgncgtgaactgtttatagagatatgcaaaatatctgcattggatactcctaatcaaccacttataagaggcaaggagctnagtgactctatatatantcgatacctgaacatttttggaaaactaaggaatataatgangttggttggttgctcctaatgtcgctggacaaagtggcgaaagaaaaggatgagctcagggattcgaattcccagctcaagtagctncataaatgacctgaaagcttctatgtntgccctgaangaganccttatctcctgtagccgcagggctgaaattgctgaaaatcaaacgcagaatctcatcctgcgantggctgaattacaacgcaagttgaactcccagcctcgcaaggtgtctactgttaaagtgagggcattgattgggaaagaatgggatcctgnaagttggaatggggacgtgtgggaagaccctgatgaagctggggacattgagcccctaaattctgatgagtcttcttttgccagtggaagcggcctccccacccccagcagaagtggcctccccacccccagtggcagcggcttccccacccacggtggtatcggcctttccacctcgtctgaggggattaaccctgcattgcctgaggaaacggtaatggcctcccctgaggcagttgccatgcaagacaatgctgattctcctcaggacccacccccaccacccctctttgcttctagacctataactagactcaagtcccagcaggcccctaaaggtgaggtacaaagtgtgacccatgaggaggtgcgctacactccaaaagaactacttgagttttctaatttatacaggcagaaatctggggaacatgtatgggaatggatattaagggtgtgggataatggcggaaggaacataaagttggatcaggccgaatttattgatatgggctcactaagcagagattctgcatttaatgttgcagctcggggagttagaaagggctctaacagtttgnttgnttggttggctgaaacatggatcaaaagatggcccaccgtgagcgagctggaaatgcccganctcccttggtttaatgtagaggaagggatccaaaggcttagggagattggaatgttggagtggatttgtcatttaagacccactcacccacactgggagggtccagaagacatncctttcaccaanactttgagaaatanatttgtgaggggagcnccagcatccttgaagagctctgtgatngctcttctctgtaggccagaccttacagtgggaaccgcagtcactnaactggaaaacttaaatgcaatgggaataatnggatcccggggtggcaggggccaagtggcggcactcaaccgccaaaggcaaggtgggcgtagttaccgtaatggacagcagagncgaagcggcaatcagaatagtctgactcatgcagacctntggcantggctaattaatcatggtgttcctagaagtgaaatagataggaagcctactaaattcttacttgatctgtataagcagaaaacttctaggtcnagtgaacaaaagtctaactcgaatcataaaaacagagagtcacggcccctcaatcaattcccagacttgagccagtttacagacccagaaccccttgaatgaaggggaggccgggtcccctcgaggaaggaccctgntacactaccgaaaatntatactgtnaatctttctcccagccttccccaaagggacctgcggccntttaccagggtaactgtgcactggggaaagggaaatantcagacctttcggggactactggacactggctctgaactgacactgattccaggagacccaaaacgtcaccgtggccctccagtcagagtaggggcttacggaggtcaggtgatnaatggagttttagctcaggtccatctcacagtgggtccagtgggtccccgaacccatcctgcggttatttccccagttccagaatgcataattggaatagacatacttagcagctggcagaatccccacattggttccctgacctgtggagtgagggctattatggtgggaaaggccaagtggaagccnctagaactgcctctacctaggaaaatagtaaatcaaaagcaataccgcatccctggaggaattgcagagattagtgccaccatcaaggacttgaaagatgcaggggtggtgattcccaccacatccccattcaactcncctatttggcctgtgcagaagacagatggatcttggagaatgacagtggattatcgtaagcttaaccaagtggtgactccaattgcagctgctgtnccagatgtggtttcattgcttgagcaaattaacacatcccctggtacctggtatgcagctattgatctggcaaatgcctttttctccatncctgtccataaggcccaccagaagcagtttgctttcagctggcaaggccagcaatataccttcactgtcctacctcagggntatatcaactctccagccctatgtcataatttagttcgcagggatcttgatcgcctttcccttccacaagatatcacactggtccattacattgatgacattatgctgattggacctagtgagcaagaagtagcaantactctagacttattggtaagacatttgcgtgtcagagggtgggaaataaatccgactaaaattcaggggccttctacctcagtgaaatttctaggggtccagtggtgtggggcatgtcgagatatcccttctaaggtgaaggataagttgttgcatctggcccctcctacaaccaagaaagaggcacaacgcctagtgggcctntttggattttggaggcaacatattcctcatttgggtgtgttactccggcccatttaccgagtgacccgaaaagctgctagttttgagtggggcccagaacaggagaaggctctgcaacaggtccaggctgctgtgcaagctgctctgccacttgggccatatgatccagcagatccaatggtgcttgaagtgtcagtggcagatagggatgctgtttggagcctttggcaggcccctataggtgaatcgcagcgcaggcctttaggattttggagcaaggccctgccatcntccgcagataactactctccttttgagagacagctcttggcctgctactgggccttagtagagactgaacgcttgaccatgggccaccaagttaccatgcgacctgagctgcccatcatgaactgggtgttatctgacccaccaagccataaagttgggcatgcacagcagcactccatcatcaaatggaagtggtatatacgtgatcgggcccgagcaggccctgaaggcacaagtaagttacatgaagaagtggcccaaatgcccatggtccccactcctgctacactgccttctctctcccagcctgcacctatggcctcatggggagtttccctacgatcagttgacagaggaagagaagactcgggcctggtttacagatggttctgcacgatatgcaggcaccacccgaaagtggacagctgcagcactacagcccctttctgggacatccctgaaggacagtggtgaagggaaatcctcccagtgggcagaacttcgagcagtgcacctggttgtgcactttgcttggaaggagaaatggccagacgtgcgattatataccgattcatgggctgtagccaatggtttggctggatggtcagggacttggaaggaacatgattggaaaattggtgacaaagaaatttggggaagaggtatgtggatagacctctctgaatgggcaaaaaacgtgaagatatttgtgtcccatgtgaatgctcaccaaagggtgacctcagcagaggaggattttaataatcaagtggataggatgacccgttctgtggataccagtcagcctctttccccagccaccctgtcattgcccaatgggctcatgaacaaagtggccatggtggcagggatggaggttatgcatgggctcagcaacatggacttccactcaccaaggccgacctggctacggccaccgctgagtgcccaatctgccagcagcagagaccaacactgagcccccgatatggcaccattccccggggtgatcagccagctacctggtggcaggttgattacattggaccncttccatcatggaaggggcagcgttttgtccttactggaatagacacttactctggatacggatttgccttccctgcacgcaatgcttctgccaaaactaccatccgtggacttacagaatgccttatccaccatcatggtattccacacagcattgcttctgaccaaggaactcacttcacagcaaaagaagtgcggcaatgggctcatgctcatggaattcactggtcttaccatgttccccaccatcctgaagcagctggcttgatagaacggtggaatggccttttgaagactcagttacagcgccagctaggtggcaataccttgcagggctggggcaaggttctccagaaggctgtatatgctctgaatcagcgtccaatatatggtgctgtttctcccatagccaggattcacgggtccaggaatcaaggggtggaaatgggagtggcaccactcactattacccctagtgacccactagcaaaatttttgcttcctgttcccgcgactttatgctctgctggcctagaggtcttagttccagagggaggaatgcttccaccaggagacacaacaatgattccattgaactggaagttaagactgccacccggccactttgggctcctcatgcctctgagtcaacaggcaaagaagggagttacggtgttggctggggtgattgatccngactaccaaggggaaattggactactactccacaatggaggtaaggaagagtatgtctggaatacaggagatcccttagggcgtctcttagtattaccatgccctgtgattaaggtcaatggaaaactacaacaacccaatccaggcaggactacnaatggcccagacccttcaggaatgaaggtttgggtcaccccgccaggtaaagaaccatgaccagctgaggtgcttgctgaaggcaaagggaatacagaatgggtagtagaagaaggtagttataaataccagctacgaccacgtgaccagttacagaaacgaggactgtaattgtcatgagtatttcctccttattttgttatgaatatgtttgtgtgtatatatacatatattaagcaaatatctttgttttctttcctctcttattcccttatcatgtaacataagatgtattgactttatatcagtatttaagtattgttaattttacatcatagtatttaagttacgggatatcaaggagaagagtaaacatcactcaaggactttacctcctcttctggggaaggggttagtgcgttttcggttgtacgcaggatagttgtatcatgttaggtggaattatgaccttgttattgtctttatttggagattaagtatggtttaaggagatgcgtatgggtgccaagttgacaaggggtggact
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 27 99.0 Highly correlated
2 ZNF485 15 94.0 Moderately correlated
3 ZNF317 15 99.0 Highly correlated
4 ZNF157 15 99.0 Highly correlated
5 ZNF766 13 43.0 Weakly correlated
6 ZNF479 12 6.4 Weakly correlated
7 ZNF589 10 28.9 Weakly correlated
8 ZNF175 10 94.0 Moderately correlated
9 ZNF723 9 15.2 Weakly correlated
10 ZNF584 9 99.0 Highly correlated
11 ZKSCAN8 9 160.0 Weakly correlated
12 ZKSCAN1 9 160.0 Weakly correlated
13 ZNF554 6 99.0 Highly correlated
14 ZNF197 6 99.0 Highly correlated
15 ZNF2 6 99.0 Highly correlated
16 ZNF263 6 180.0 Weakly correlated
17 ZIM3 6 87.0 Moderately correlated
18 ZNF394 6 99.0 Highly correlated
19 ZNF302 5 43.0 Weakly correlated
20 ZFP37 5 99.0 Highly correlated
21 ZNF534 4 19.6 Weakly correlated
22 ZNF679 4 28.9 Weakly correlated
23 ZNF671 4 94.0 Moderately correlated
24 ZNF528 3 43.0 Weakly correlated
25 ZNF324 3 99.0 Highly correlated
26 ZNF680 3 28.9 Weakly correlated
27 ZNF510 2 99.0 Highly correlated
28 ZNF92 2 28.9 Weakly correlated
29 ZNF101 2 43.0 Weakly correlated
30 ZNF182 2 99.0 Highly correlated
31 ZNF558 2 99.0 Highly correlated
32 ZNF793 2 99.0 Highly correlated
33 ZNF248 2 99.0 Highly correlated
34 ZNF735 2 28.9 Weakly correlated
35 ZNF506 2 28.9 Weakly correlated
36 ZNF486 2 8.6 Weakly correlated
37 ZNF251 2 94.0 Moderately correlated
38 ZNF257 2 0.0 Weakly correlated
39 ZNF274 2 99.0 Highly correlated
40 ZNF701 2 28.9 Weakly correlated
41 ZNF705B 2 28.9 Weakly correlated
42 ZNF705D 2 28.9 Weakly correlated
43 ZNF792 2 94.0 Moderately correlated
44 ZNF684 1 99.0 Highly correlated
45 ZNF799 1 43.0 Weakly correlated
46 ZNF850 1 28.9 Weakly correlated
47 ZNF778 1 74.0 Weakly correlated
48 ZNF8 1 99.0 Highly correlated
49 ZNF674 1 99.0 Highly correlated
50 ZNF483 1 99.0 Highly correlated
51 ZNF331 1 94.0 Moderately correlated
52 ZFP57 1 87.0 Moderately correlated
53 ZFP69B 1 99.0 Highly correlated
54 ZNF18 1 160.0 Weakly correlated
55 ZNF224 1 69.0 Weakly correlated
56 ZNF234 1 99.0 Highly correlated
57 ZNF284 1 43.0 Weakly correlated
58 ZNF286A 1 160.0 Weakly correlated
59 ZNF320 1 28.9 Weakly correlated
60 ZNF658 1 99.0 Highly correlated
61 ZNF334 1 99.0 Highly correlated
62 ZNF425 1 94.0 Moderately correlated
63 ZNF433 1 43.0 Weakly correlated
64 ZNF441 1 43.0 Weakly correlated
65 ZNF519 1 19.6 Weakly correlated
66 ZNF549 1 87.0 Moderately correlated
67 ZNF587B 1 8.6 Weakly correlated
68 ZNF597 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF157 13 99.0 Highly correlated
2 ZNF485 12 94.0 Moderately correlated
3 ZNF723 9 15.2 Weakly correlated
4 ZNF479 7 6.4 Weakly correlated
5 ZNF317 5 99.0 Highly correlated
6 ZNF302 5 43.0 Weakly correlated
7 ZIM3 3 87.0 Moderately correlated
8 ZNF534 3 19.6 Weakly correlated
9 ZNF671 3 94.0 Moderately correlated
10 ZFP37 2 99.0 Highly correlated
11 ZNF554 2 99.0 Highly correlated
12 ZNF263 2 180.0 Weakly correlated
13 ZNF584 2 99.0 Highly correlated
14 ZNF684 1 99.0 Highly correlated
15 ZNF680 1 28.9 Weakly correlated
16 ZNF793 1 99.0 Highly correlated
17 ZNF589 1 28.9 Weakly correlated
18 ZNF549 1 87.0 Moderately correlated
19 ZNF257 1 0.0 Weakly correlated
20 ZNF506 1 28.9 Weakly correlated
21 ZNF324 1 99.0 Highly correlated
22 ZNF175 1 94.0 Moderately correlated
23 ZNF597 1 94.0 Moderately correlated
24 ZNF674 1 99.0 Highly correlated
25 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF157 99.0 Highly correlated
2 ZNF479 6.4 Weakly correlated
3 ZNF485 94.0 Moderately correlated
4 ZNF723 15.2 Weakly correlated