ZRdb KZFP & Repeats
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LTR_ERVL-E

  • Name
    ERVL-E
  • Repbase
    ERVL-E
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000120
Description :

MLT2E LTRs. ORFs at roughly pos 131-1720, 1725-5267.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
attattggtaccgggagtggttccaggggaacagaaccttaaggatgggaatctggaattggttctctgatctgattagatttaaaggcgctaatgaccctgtttccagtggtaaaggggacactggtagtccatggcatgcagtggcaaaaagttactcaaattatcacctgtggncacctgtaatcaagtgcctatagaaggcaaggctttgggtgaccangtanttgctgccntagaacattttagtggaaataaggagtataatgangttggttggttgcttctaantgcgctggagaacttggagaaagaaaatgatgagctcagggctttaaattcccagctcaagntccgggtaagggaccngaaagcttctatgactgccctgaaagaaacccttatctcctgtagccgcagggctgagatttctgaaaaccaaacccaaagtctnatcctgcgggtggctgaattacaacgcaaattgaattcncaacctcgcagggtntcttntgttaaagttagggcattgattgggaaggaatgggaccctgaaaattggaatggggacatntgggcggattccgatgaagctggggaccttgaacccctaaattctgccgagccttctttgccagtagaagcagccctttcncccctgtctgaggaggttagtctccccttgcctgaagaanctgtaatggcctcccctgaggtagttgccttgcaaggnantgctgattctcctcaggacctacccccaccacctctcnttgcttctagacctataactagactcaagtcccagcaggccccnaggggtnaggtacaaagtgtgacccatgaggaggtannntacacaccaaaagaattgcaagattttnccaatttatatcgacagaaacctggggaatatgtgtgggaatggatnctaagggtgttggatcanggtggaaggaatataacgttggatcgggccgaatttattgatatgggtncactaagcagagattctggattcaatgtgttagctcgagnagctggaagtggctctaacagtttgcttggttggttgactgaaacntggactcaaaggtggcctacantnaatgaagttgagatgccagaacttccttggtatantgtagaggaaggnatccaaaggcttagggagatnggaatgttggagtggatttatcatgtaagacctgctcacctacaccctctaactatgtccccgggagggtccagggacactcccttcaccaaggcnttgagaaatacattngtgaggggagcaccagcatccttgaagagctctgtggtggctnttctctgtaggccaggnatgacggtgggagatgctgccattgaaatgggctccctganttcaatggggatgatgggatcccggggtggcagaggccaagtggcggcacttaaccgccagagacaaggtgggcgcggttaccgtaatgggcagcagagccaaagcggtaatcagaatggtttgacccgcagagatctttggcgntggctaattgatcatggtgtccctaggantgaaatagatgggcagcctactaaagtcttacttgatttgtataagcagaaaagctctaggtctggtgaacagaagtctgacttgagtcaccaacggagagtcacggcccctcanccagttcccagacttgagccagttcacagccagaccccttgaatgaaggggaggccgggtccccttgaggaaggaccctgcnacactgccaaaaatntatactgtaaatcttcctccnagccttccccaaagggacctgcggccatttaccagggtgactgtgcactggggaaagggaaatanccagacttttnagggattactggacactggctctgaactgacgctaattcctggagacccaaaacgccactgtggtccaccagtcagagtaggggcttatggaggtcaggtgatnaatggagttttggctcgagtccgtctcacagtgggcccagtgggtccncgaacccaccctgtggttatttccccagttccngaatgcatagttggaatagacatactcagcaactggcagaatccccacattggttccctgacccgtggagtgagggctattatggtaggaaaggccaagtggaagccnctggaactgcctctncctaccaaaatagtaaaccaaaagcaataccgcatccctggaggaattgcagagattagtgccaccatcaaagacttgaaagatgcaggggtggtgattcctaccacatccccatttaactcgcctgtttggcctgtgcagaagacagatggatcttggagaatgacagtggattatcgtaaacttaatcaggtggtgactccaattgcagctgctgttccagatgtggtntctttactggagcaaatcaacacancccctggcacctggtatgcagctattgatctggcaaatgcttttttctctatacctgttagtaaagaccaccagaagcagtttgctttcacctggcagggncagcagtacaccttcactgtcttgcctcagggctatgtcaactctccngctctctgtcataatntagtccgcagggaccttgatcgtcttnncattccacaggacatcacgctggtccactacattgatgacatcatgctgattggacctggtgagcaggaagtagcaagtactctagacgccttggtaagacacatgcgtgccagagggtgggagataaatcccacgaaaattcaggggcctgccacctcggtgaagtttctaggggtccagtggtctggggcatgtcgagatatcccttccaaggtgaaggacaagttgctgcatctngcncctcctaccactaagaaagaggcacaatgcttggtgggcctctttggattttggaggcaacatataccncatttgggcgtgctgctccgacccatttaccgagtaacccgnaaggctgccagttttgagtggggcccagagcaagagaaggctctgcagcaggtccaggctgcngtgcaagctgctctgccacttgggccntatgacccagcagatccaatggtgctcgaagtgtctgtggcagatagggatgctgtatggagcctctggcaagccccnataggngaatcacagcgcagacccctaggattttggagcaaagccatgccatcttctgcagataactattctccttttgagaaacagctcctggcttgctactgggccctggtagagactgaacgcctgaccatgggncaccaagtnaccatgcgacctgagctgcccatcatgaactgggtgttatctgacccaccaagccataaagttgggcgtgcacagcagcantccatcatcaagtggaagtggtatatacgagatcgggctcgagcaggtccngaaggcacaagtaagttgcatgagcaggtggctcagactcccatggcncctactcctgctgcattgcctcctctccctcaacccgcacctatggcctcatggggagttccctatgaccagttgactgaggaagaaaaaactcgggcctggtttacagatggttctgcacgatatgctggcaccanccgaaagtggacggctgcagcactacagccccactcaggggtggccctgaaggacagtggtgaagggaaatcctcccagtgggcagaacttcgagcagtgcacctggttgtccactttgcctggaaggagagatggccagaggtacggatctacactgattcatgggcagtggctaacggtttggctggatggtcagggacttggaaggaacangattggaagattggtgacaaggaggtctggggaagaggtatgtggatggacctctcggaatgggcacagagtgtgaagatatttgtgtcccatgtgaatgctcaccaaagggcanccncngcagaggaggntctcaataatcaggtggacaagatgacccgttctgtggatgtcagtcagcctctttccccagccaccccngtgcttgctcaatgggctcatgaacaaagtggccatggtggcagggatggaggctatgcatgggctcagcaacatggacttccnctcaccaaggctgatctggctacngccactgctgagtgcccaacctgccaacagcagagaccaacgctgagcccccgatatggcaccattccccggggggaccagccagccacctggtggcaggttgattacattggaccncttccatcatggaaggggcagcgatttgtcctcactggaatagacacttattctggatatggatttgccttccctgcccgcaatgcttctgccagnaccaccatccgtggacttacagaatgccttattcaccgtcatggtattccacacagcattgcttctgaccaaggaactcattttacagcaaangaagtgcggcaatgggctcatgcccatggaattcactggtcttaccacgtnccccatcacccngaagcagctggcctgatagaacggtggaatggcctnttgaagactcagttacggcgccagctgggngacaacaccttgnagggctggggtnntgtcctncaggatgcggtatatgctctgaatcagcgaccaatatatggtgctgtttctcccatagccagaatncacgggtccgggaatcaaggggtggaagtgggagtggctcctctcactattacncctaatgacccactngcaaaatttttgcttcccgtccccgcaactttgggctctgctggtttagaggtcttagttcccaagggaggaatgcttccaccaggggacacaacaatggttccattgaactggaagctgagactgccacctggccactttgggctcctcatgccactgaaccaacaggcaaagaagggagttactgtactggctggggtgattgatcctgattatcaaggggaaattgggttgctgctacacaatgggggcaaggaggantatgtctggaatncaggagatcctctggggcgcctcttagtactcccatgtccngtgataaaagttaatggaaaactacagcaacccaatanaggcaggaccgctaanggctcagacccttcaggaatgaaggtttgggtcaccccaccaggcaaagaaccacgaccagctgaggtgctngctgagggcaaagggaatatggaatgggtagtggaagaaggaagttataaataccagctacgaccncgtgaccagttgcagaaacgaggactgtagtagttatgngtatttcttccttgctttgatatgaatatatttgtgatatatatattaacnaatatctttnttttctttcctctctcattcccctactatctaacataagatgtgttaatagtagttaaccttatatctcagtatttaagttacaggatatcaaagggggantgtgactcagctagaagagnaatgaacatcacccagagatggataaagtgacntntgggactttgtatcctcttttggggagagggttagcgtgttttcggttgtacgagggatagttgcatcatgttaggcggaagcatgattttgctattgtctttatttggaagttaaatatggttnaaagaggtgtgtatggatgccgagttgacaaggggtggac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 401 99.0 Highly correlated
2 ZNF766 133 43.0 Weakly correlated
3 ZIM3 118 87.0 Moderately correlated
4 ZNF680 104 28.9 Weakly correlated
5 ZNF263 100 180.0 Weakly correlated
6 ZNF317 99 99.0 Highly correlated
7 ZNF157 88 99.0 Highly correlated
8 ZNF394 78 99.0 Highly correlated
9 ZNF679 70 28.9 Weakly correlated
10 ZNF589 65 28.9 Weakly correlated
11 ZNF485 64 94.0 Moderately correlated
12 ZNF723 64 15.2 Weakly correlated
13 ZFP37 59 99.0 Highly correlated
14 ZNF479 59 6.4 Weakly correlated
15 ZNF175 57 94.0 Moderately correlated
16 ZNF554 56 99.0 Highly correlated
17 ZKSCAN1 54 160.0 Weakly correlated
18 ZNF2 47 99.0 Highly correlated
19 ZKSCAN8 43 160.0 Weakly correlated
20 ZNF197 43 99.0 Highly correlated
21 ZNF584 43 99.0 Highly correlated
22 ZNF101 33 43.0 Weakly correlated
23 ZNF528 31 43.0 Weakly correlated
24 ZNF534 30 19.6 Weakly correlated
25 ZNF558 28 99.0 Highly correlated
26 ZNF701 26 28.9 Weakly correlated
27 ZFP69B 24 99.0 Highly correlated
28 ZNF18 24 160.0 Weakly correlated
29 ZNF324 23 99.0 Highly correlated
30 ZNF793 23 99.0 Highly correlated
31 ZNF597 21 94.0 Moderately correlated
32 ZFP57 19 87.0 Moderately correlated
33 ZNF257 19 0.0 Weakly correlated
34 ZNF92 16 28.9 Weakly correlated
35 ZNF251 15 94.0 Moderately correlated
36 ZNF274 14 99.0 Highly correlated
37 ZNF549 13 87.0 Moderately correlated
38 ZNF320 12 28.9 Weakly correlated
39 ZNF735 12 28.9 Weakly correlated
40 ZNF334 11 99.0 Highly correlated
41 ZNF506 11 28.9 Weakly correlated
42 ZNF705B 11 28.9 Weakly correlated
43 ZNF792 11 94.0 Moderately correlated
44 ZNF571 10 99.0 Highly correlated
45 ZNF684 10 99.0 Highly correlated
46 ZNF707 10 74.0 Weakly correlated
47 ZNF490 9 43.0 Weakly correlated
48 ZNF75D 9 94.0 Moderately correlated
49 ZNF133 8 99.0 Highly correlated
50 ZNF610 8 28.9 Weakly correlated
51 ZNF705D 8 28.9 Weakly correlated
52 ZNF141 7 43.0 Weakly correlated
53 ZNF425 7 94.0 Moderately correlated
54 ZNF429 7 28.9 Weakly correlated
55 ZNF486 7 8.6 Weakly correlated
56 ZNF682 7 28.9 Weakly correlated
57 ZNF778 7 74.0 Weakly correlated
58 ZNF182 6 99.0 Highly correlated
59 ZNF28 6 28.9 Weakly correlated
60 ZNF573 6 94.0 Moderately correlated
61 ZNF585A 6 99.0 Highly correlated
62 ZNF695 6 28.9 Weakly correlated
63 ZNF8 6 99.0 Highly correlated
64 ZNF169 5 94.0 Moderately correlated
65 ZNF26 5 99.0 Highly correlated
66 ZNF273 5 28.9 Weakly correlated
67 ZNF331 5 94.0 Moderately correlated
68 ZNF350 5 99.0 Highly correlated
69 ZNF519 5 19.6 Weakly correlated
70 ZNF547 5 74.0 Weakly correlated
71 ZNF563 5 28.9 Weakly correlated
72 ZNF140 4 99.0 Highly correlated
73 ZNF510 4 99.0 Highly correlated
74 ZNF674 4 99.0 Highly correlated
75 ZNF19 3 99.0 Highly correlated
76 ZNF264 3 99.0 Highly correlated
77 ZNF440 3 28.9 Weakly correlated
78 ZNF468 3 28.9 Weakly correlated
79 ZNF471 3 94.0 Moderately correlated
80 ZNF585B 3 99.0 Highly correlated
81 ZNF671 3 94.0 Moderately correlated
82 ZNF786 3 99.0 Highly correlated
83 ZNF808 3 19.6 Weakly correlated
84 ZNF823 3 43.0 Weakly correlated
85 ZNF84 3 99.0 Highly correlated
86 ZNF93 3 8.6 Weakly correlated
87 ZNF136 2 74.0 Weakly correlated
88 ZNF222 2 43.0 Weakly correlated
89 ZNF282 2 319.0 Weakly correlated
90 ZNF283 2 99.0 Highly correlated
91 ZNF441 2 43.0 Weakly correlated
92 ZNF445 2 99.0 Highly correlated
93 ZNF44 2 43.0 Weakly correlated
94 ZNF559 2 74.0 Weakly correlated
95 ZNF605 2 99.0 Highly correlated
96 ZNF667 2 99.0 Highly correlated
97 ZNF780A 2 43.0 Weakly correlated
98 ZNF816 2 28.9 Weakly correlated
99 ZFP28 1 99.0 Highly correlated
100 ZKSCAN5 1 160.0 Weakly correlated
101 ZNF12 1 99.0 Highly correlated
102 ZNF17 1 69.0 Weakly correlated
103 ZNF214 1 99.0 Highly correlated
104 ZNF248 1 99.0 Highly correlated
105 ZNF253 1 19.6 Weakly correlated
106 ZNF284 1 43.0 Weakly correlated
107 ZNF287 1 99.0 Highly correlated
108 ZNF302 1 43.0 Weakly correlated
109 ZNF304 1 99.0 Highly correlated
110 ZNF33A 1 99.0 Highly correlated
111 ZNF343 1 74.0 Weakly correlated
112 ZNF347 1 43.0 Weakly correlated
113 ZNF383 1 99.0 Highly correlated
114 ZNF417 1 28.9 Weakly correlated
115 ZNF418 1 43.0 Weakly correlated
116 ZNF41 1 99.0 Highly correlated
117 ZNF433 1 43.0 Weakly correlated
118 ZNF480 1 43.0 Weakly correlated
119 ZNF483 1 99.0 Highly correlated
120 ZNF530 1 28.9 Weakly correlated
121 ZNF560 1 43.0 Weakly correlated
122 ZNF567 1 99.0 Highly correlated
123 ZNF578 1 15.2 Weakly correlated
124 ZNF611 1 19.6 Weakly correlated
125 ZNF649 1 28.9 Weakly correlated
126 ZNF677 1 99.0 Highly correlated
127 ZNF700 1 28.9 Weakly correlated
128 ZNF716 1 19.6 Weakly correlated
129 ZNF730 1 19.6 Weakly correlated
130 ZNF75A 1 94.0 Moderately correlated
131 ZNF765 1 8.6 Weakly correlated
132 ZNF77 1 87.0 Moderately correlated
133 ZNF789 1 99.0 Highly correlated
134 ZNF799 1 43.0 Weakly correlated
135 ZNF845 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF157 76 99.0 Highly correlated
2 ZNF485 59 94.0 Moderately correlated
3 ZIM3 57 87.0 Moderately correlated
4 ZNF723 39 15.2 Weakly correlated
5 ZNF479 36 6.4 Weakly correlated
6 ZNF680 26 28.9 Weakly correlated
7 ZNF382 26 99.0 Highly correlated
8 ZNF263 23 180.0 Weakly correlated
9 ZNF534 17 19.6 Weakly correlated
10 ZNF554 16 99.0 Highly correlated
11 ZNF317 14 99.0 Highly correlated
12 ZNF793 12 99.0 Highly correlated
13 ZNF257 10 0.0 Weakly correlated
14 ZNF597 10 94.0 Moderately correlated
15 ZNF684 10 99.0 Highly correlated
16 ZNF766 9 43.0 Weakly correlated
17 ZFP37 9 99.0 Highly correlated
18 ZNF735 8 28.9 Weakly correlated
19 ZNF506 8 28.9 Weakly correlated
20 ZNF197 8 99.0 Highly correlated
21 ZNF549 7 87.0 Moderately correlated
22 ZNF589 6 28.9 Weakly correlated
23 ZNF75D 5 94.0 Moderately correlated
24 ZNF679 5 28.9 Weakly correlated
25 ZNF558 5 99.0 Highly correlated
26 ZNF528 5 43.0 Weakly correlated
27 ZFP57 5 87.0 Moderately correlated
28 ZNF133 5 99.0 Highly correlated
29 ZNF2 5 99.0 Highly correlated
30 ZNF490 4 43.0 Weakly correlated
31 ZKSCAN1 4 160.0 Weakly correlated
32 ZNF101 4 43.0 Weakly correlated
33 ZNF701 4 28.9 Weakly correlated
34 ZNF571 3 99.0 Highly correlated
35 ZNF584 3 99.0 Highly correlated
36 ZNF707 3 74.0 Weakly correlated
37 ZNF175 3 94.0 Moderately correlated
38 ZNF141 3 43.0 Weakly correlated
39 ZKSCAN8 3 160.0 Weakly correlated
40 ZNF26 2 99.0 Highly correlated
41 ZNF320 2 28.9 Weakly correlated
42 ZNF610 2 28.9 Weakly correlated
43 ZNF445 2 99.0 Highly correlated
44 ZNF792 2 94.0 Moderately correlated
45 ZNF677 2 99.0 Highly correlated
46 ZNF92 2 28.9 Weakly correlated
47 ZNF585A 2 99.0 Highly correlated
48 ZNF471 2 94.0 Moderately correlated
49 ZNF44 2 43.0 Weakly correlated
50 ZNF425 1 94.0 Moderately correlated
51 ZNF334 1 99.0 Highly correlated
52 ZNF417 1 28.9 Weakly correlated
53 ZNF519 1 19.6 Weakly correlated
54 ZNF28 1 28.9 Weakly correlated
55 ZNF560 1 43.0 Weakly correlated
56 ZNF140 1 99.0 Highly correlated
57 ZNF264 1 99.0 Highly correlated
58 ZNF283 1 99.0 Highly correlated
59 ZNF41 1 99.0 Highly correlated
60 ZNF468 1 28.9 Weakly correlated
61 ZNF816 1 28.9 Weakly correlated
62 ZFP69B 1 99.0 Highly correlated
63 ZNF674 1 99.0 Highly correlated
64 ZNF287 1 99.0 Highly correlated
65 ZNF440 1 28.9 Weakly correlated
66 ZNF695 1 28.9 Weakly correlated
67 ZNF667 1 99.0 Highly correlated
68 ZNF716 1 19.6 Weakly correlated
69 ZNF823 1 43.0 Weakly correlated
70 ZNF324 1 99.0 Highly correlated
71 ZNF273 1 28.9 Weakly correlated
72 ZNF302 1 43.0 Weakly correlated
73 ZNF547 1 74.0 Weakly correlated
74 ZNF84 1 99.0 Highly correlated
75 ZNF350 1 99.0 Highly correlated
76 ZNF700 1 28.9 Weakly correlated
77 ZNF433 1 43.0 Weakly correlated
78 ZNF671 1 94.0 Moderately correlated
79 ZNF585B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated
2 ZNF157 99.0 Highly correlated
3 ZNF197 99.0 Highly correlated
4 ZNF257 0.0 Weakly correlated
5 ZNF263 180.0 Weakly correlated
6 ZNF317 99.0 Highly correlated
7 ZNF534 19.6 Weakly correlated
8 ZNF554 99.0 Highly correlated
9 ZNF589 28.9 Weakly correlated
10 ZNF597 94.0 Moderately correlated
11 ZNF680 28.9 Weakly correlated
12 ZNF684 99.0 Highly correlated
13 ZNF723 15.2 Weakly correlated
14 ZNF793 99.0 Highly correlated