ZRdb KZFP & Repeats
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LTR_ERVL-B4

  • Name
    ERVL-B4
  • Repbase
    ERVL-B4
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000775
Description :

MLT2B4 LTRs. ORFs at roughly pos. 53-1792, 1793-5344.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gattttggtaccgagagtggttctagaggaacagaattttaaggatgagttttctgaattggttctggggtttctggaattggctctctaatctgattagatttaaagacgctaatgactctatttccagtagtaaagagagcactgatagtccatggcgtgatctggcaatagagatacgcaaaatatcnccattggatactcctaatcaaccacttataagaagcaagganctgggtgactntgtatatgatactttcgaacatttttggnaaactaacgaatataatgagattggctggttgctcctaatgtcgctggacaaagtggngaaagaaaaggatgagctcagggattcgaattcccagctcaagcgccgcataaatgacctgaaagcttctatgtgtgccctgaaggagacccttatctcctgtagccgcagggctgagattgctgaaaatcaaacgcagaatctcatcctgcgactggctgaattacaacgcaagttgaactcccagcctcgcagggtgtctactgttaaagtgagggcattgattgggaaagaatgggatcctgnaagttggaatggggacgtgtgggaagaccctgatgaagctggggacattgagcccctaaattctgatgagtcttctttgccagtggaagnggcctccccacccccagtggaagcggcctccccacccccagtggtagcggcctctccacccccgtctgaggggattaaccctgcattgcctgaggaaactgtaatggcctcccctgaggcagttgccatgcaagacaatgctgattctcctcaggacccacccccaccacccctctttgcttctagacctataactagactcaagtcccagcaggcccctaaaggtgaggtacaaagtgtgacccatgaggaggtgcgctacactccaaaagaactacttgagttttctaatttatacagacagaaatccggggaacatgtgtgggaatggatattaagggtgtgggataatggtggaaggaacataaagttggatcaggccgaatttattgatatgggcccactaagcagagattctgcatttaatgttgcagctcggggagttagaaagggctctaacagtttgtttggttggttggctgaaacatggaccaaaaggtggcccacagtgagcgaattggaaatgccggacctgccttggtttaatgtagaggaagggattcaaaggcttagggagattggaatgttagagtggatttgtcatttaagacctactcacccacactgggagggtccagaagacatacctttcaccannactgtgagaaataaatttgtgaggggagccccagcatccttgaagagctctgtgatcgctcttctctgtaggccagaccttacagtgggaactgcagccactgaattgggaaacctaaatgcaatgggagtaattggatcccggggtggcaggggccaagtggcggcactcaaccgccaaaggcaaggtgggcgtggttaccgtaatggacagcagagtcaaagcagcaatcagaatagtctgactcgcgcagacctatggcgttggctagttgatcatggtgttcctagaagtgaaatagataggaagcctactaaattcttacttgatctgtataagcagaaaagttctaggtcaagtgaacaaaagtctaacttgaatcataaaaacagagagtcacggcccctcaatcaattcccagacttgagccagtttacagacccagaaccccttgaatgaaggggaggccgggtccccttgaggaaggaccccggtacactgccaaaaatttatactgttaatctttctcccagccttccccaaagggacctacggccttttaccagggtaactgtgcattggggaaaaggaaataatcagacctttcggggactactggacactggctctgaactgacactaattccaggagacccaaaacgtcactgtggtccaccagtcagagtaggggcttatggaggtcaggtgatcaatggagttttagctcaggtccgtctcacagtgggcccagtgggtccccgaacccatcctgtggttatttccccagttccggaatgcataattggaatagacatactcagcagctggcagaatccccacattggttccctgacctgtggagtgagggctattatggtgggaaaggccaagtggaagccactagaactgcctctacctaggaaaatagtaaaccaaaagcaataccgcattcctggagggattgcagagattagtgccaccatcaaggacttgaaagatgcaggggtggtgattcccaccacatccccattcaactcgcctatttggcctgtgcagaagacagatggatcttggagaatgacagtggattatcgtaagcttaaccaggtggtgactccaattgcagctgctgtaccagatgtggtttcattgcttgagcaaattaacacatcccctggtacctggtatgcagctattgatctggcaaatgcctttttctccatacctgtcaataaggnccaccagaagcagtttgctttcagctggcaaggccagcaatacaccttcactgtcctacctcaggggtatatcaactctccagccctatgtcataatttagttcgcagggatcttgatcgcctttcccttccacaagatatcacactggtccattacattgatgacattatgctgattggacctagtgagcaagaagtagcaactactctagacttattggtaagacatttgcgtgtcagagggtgggaaataaatccgacaaaaattcaggggccttctacctcagtgaaatttctaggggtccagtggtgtggggcatgtcgagatatcccttctaaggtgaaggataagttgttgcatctggcccctcctacaaccaaaaaagaggcacaatgcctagtgggcctctttggattttggaggcaacatattcctcatttgggtgtgttactccggcccatttaccgagtgacccgaaaagctgctagttttgagtggggcccagaacaagagaaggctctgcaacaggtccaggctgctgtgcaagctgctctgccacttgggccatatgatccagcagatccaatggtgcttgaagtgtcagtggcagatagggatgctgtttggagcctttggcaggcccctataggtgaatcgcagcgcaggcccttaggattttggagcaaagccctgccatcctctgcagataactactctccttttgagaaacagctcttggcctgctactgggccttagtagagactgaacgcttaaccatgggccaccaagttaccatgcgacctgagctgcccatcatgaactgggtgttatctgacccaccaagccataaagttgggcgtgcacagcagcactccatcatcaaatggaagtggtatatacgtgatcgggcccgagcaggccctgaaggcacaagtaagttacatgaagaagtggcccaaatgcccatggtccccactcctgctacactgccttctctctcccagcctgcacctatggcctcatggggagttccctacgatcagttgacagaggaagagaagactcgggcctggtttacagatggttctgcacgatatgcaggcaccacccgaaagtggacagctgcagcactacagcccctttctgggacatccctgaaggacagtggtgaagggaaatcctcccagtgggcagaacttcgagcagtgcacctggttgttcactttgcttggaaggagaaatggccagacgtgcgattatataccgattcatgggctgtggccaatggtttggctggatggtcagggacttggaaggaacatgattggaaaattggtgacaaggaaatttggggaagaggtatgtggatagacctctctgaatgggcaaaaaacgtgaagatatttgtgtcccatgtgaatgctcaccaaagggtgacctcagcagaggaggattttaataatcaagtggataggatgacccgttctgtggataccagtcagcctctttccccagccacccctgtcatcgcccaatgggctcatgaacaaagtggccatggtggcagggatggaggttatgcatgggctcagcaacatggacttccactcaccaaggccgacctggctacggccaccgctgagtgcccaatctgccagcagcagagaccaacactgagtccccgatatggcaccattccccggggtgatcagccagctacctggtggcaggttgattacattggaccgcttccatcatggaaggggcagcgttttgttcttactggaatagacacttactctggatacggatttgccttccctgcacgcaatgcttctgccaaaactaccatccgtggacttacagaatgccttatccaccgtcatggtattccacacagcattgcttctgatcaaggaactcacttcacagcaaangaagtgcggcaatgggcccatgctcatggaattcactggtcttaccatgttccccaccatcctgaagcagctggcttgatagaacggtggaatggccttttgaagactcagttacagcgccagctaggtggcaataccttgcagggctggggcaaggttctccagaaggctgtatatgctctgaatcagcgtccaatatatggtgctgtttctcccatagccaggattcacgggtccaggaatcaaggggtggaaatgggagtggcaccactcactattacccctagtgacccactagcaaaatttttgcttcctgttcccgcgaccttatgctctgctggcctagaggtcttagttccaaagggaggaatgcttccaccaggagacacaacaatgattccattgaactggaagttaagactgccacccggccactttgggctcctcatgcctctgaatcaacaggcaaagaagggagttactgtgctggctggggtgattgatcctgactaccaaggggaaattggactgctactccacaatggaggtaaggaagagtatgtctggaatacaggagatcccttagggcgtctcttagtattaccatgccctgtgattaaggtcaatggaaaactacaacaacccaatccaggcaggactactaatggcccagacccttcaggaatgaaggtttgggtcaccccaccaggtaaagaaccacgaccagctgaggtgcttgctgaaggcaaagggaatacggaatgggtagtggaagaaggtagttataaataccagctacgaccacgtgaccagttacagaaacgaggactgtaattgtcatgagtatttcctccttattttgttatgaatatgtttgtgtgtatatatacatatattaagcaaatatctttgttttctttcctctcttattcccttatcatgtaacataagatgtattgactttatatcatagtatttaagtattgttaattttacatcatagtatttaagttacgggatatcaaggagaagagtaaacatcactcaaggactttacctcctcttctggggaaggggttagtgcgttttcggttgtacgcaggatagttgtatcatgttaggcggaattatgaccttgttattgtctttatttggagattaagtatggtttaaggagatgcgtatgggtgccaagttgacaaggggtggact
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 162 99.0 Highly correlated
2 ZNF485 80 94.0 Moderately correlated
3 ZNF157 69 99.0 Highly correlated
4 ZNF723 61 15.2 Weakly correlated
5 ZNF317 50 99.0 Highly correlated
6 ZNF766 44 43.0 Weakly correlated
7 ZNF554 39 99.0 Highly correlated
8 ZIM3 37 87.0 Moderately correlated
9 ZNF175 37 94.0 Moderately correlated
10 ZNF479 37 6.4 Weakly correlated
11 ZNF679 36 28.9 Weakly correlated
12 ZNF394 34 99.0 Highly correlated
13 ZNF263 33 180.0 Weakly correlated
14 ZNF680 32 28.9 Weakly correlated
15 ZFP37 29 99.0 Highly correlated
16 ZNF793 26 99.0 Highly correlated
17 ZFP69B 23 99.0 Highly correlated
18 ZKSCAN1 21 160.0 Weakly correlated
19 ZNF584 21 99.0 Highly correlated
20 ZNF549 20 87.0 Moderately correlated
21 ZNF589 20 28.9 Weakly correlated
22 ZNF324 18 99.0 Highly correlated
23 ZNF2 17 99.0 Highly correlated
24 ZNF534 17 19.6 Weakly correlated
25 ZNF75D 17 94.0 Moderately correlated
26 ZNF18 16 160.0 Weakly correlated
27 ZNF101 15 43.0 Weakly correlated
28 ZNF506 15 28.9 Weakly correlated
29 ZKSCAN8 14 160.0 Weakly correlated
30 ZNF320 14 28.9 Weakly correlated
31 ZNF701 14 28.9 Weakly correlated
32 ZNF197 13 99.0 Highly correlated
33 ZNF528 11 43.0 Weakly correlated
34 ZNF558 11 99.0 Highly correlated
35 ZNF671 11 94.0 Moderately correlated
36 ZNF597 10 94.0 Moderately correlated
37 ZNF707 10 74.0 Weakly correlated
38 ZNF133 9 99.0 Highly correlated
39 ZNF705B 9 28.9 Weakly correlated
40 ZNF792 9 94.0 Moderately correlated
41 ZNF251 8 94.0 Moderately correlated
42 ZNF28 8 28.9 Weakly correlated
43 ZNF334 8 99.0 Highly correlated
44 ZNF610 8 28.9 Weakly correlated
45 ZFP57 7 87.0 Moderately correlated
46 ZNF331 7 94.0 Moderately correlated
47 ZNF735 7 28.9 Weakly correlated
48 ZNF140 6 99.0 Highly correlated
49 ZNF202 6 160.0 Weakly correlated
50 ZNF429 6 28.9 Weakly correlated
51 ZNF486 6 8.6 Weakly correlated
52 ZNF92 6 28.9 Weakly correlated
53 ZNF257 5 0.0 Weakly correlated
54 ZNF8 5 99.0 Highly correlated
55 ZNF182 4 99.0 Highly correlated
56 ZNF224 4 69.0 Weakly correlated
57 ZNF248 4 99.0 Highly correlated
58 ZNF264 4 99.0 Highly correlated
59 ZNF425 4 94.0 Moderately correlated
60 ZNF274 3 99.0 Highly correlated
61 ZNF284 3 43.0 Weakly correlated
62 ZNF490 3 43.0 Weakly correlated
63 ZNF563 3 28.9 Weakly correlated
64 ZNF571 3 99.0 Highly correlated
65 ZNF585A 3 99.0 Highly correlated
66 ZNF585B 3 99.0 Highly correlated
67 ZNF684 3 99.0 Highly correlated
68 ZNF695 3 28.9 Weakly correlated
69 ZNF705D 3 28.9 Weakly correlated
70 ZNF100 2 28.9 Weakly correlated
71 ZNF12 2 99.0 Highly correlated
72 ZNF136 2 74.0 Weakly correlated
73 ZNF141 2 43.0 Weakly correlated
74 ZNF302 2 43.0 Weakly correlated
75 ZNF440 2 28.9 Weakly correlated
76 ZNF471 2 94.0 Moderately correlated
77 ZNF519 2 19.6 Weakly correlated
78 ZNF547 2 74.0 Weakly correlated
79 ZNF674 2 99.0 Highly correlated
80 ZNF730 2 19.6 Weakly correlated
81 ZNF823 2 43.0 Weakly correlated
82 ZNF84 2 99.0 Highly correlated
83 ZKSCAN5 1 160.0 Weakly correlated
84 ZNF169 1 94.0 Moderately correlated
85 ZNF17 1 69.0 Weakly correlated
86 ZNF19 1 99.0 Highly correlated
87 ZNF214 1 99.0 Highly correlated
88 ZNF222 1 43.0 Weakly correlated
89 ZNF250 1 99.0 Highly correlated
90 ZNF26 1 99.0 Highly correlated
91 ZNF30 1 94.0 Moderately correlated
92 ZNF343 1 74.0 Weakly correlated
93 ZNF417 1 28.9 Weakly correlated
94 ZNF433 1 43.0 Weakly correlated
95 ZNF441 1 43.0 Weakly correlated
96 ZNF44 1 43.0 Weakly correlated
97 ZNF468 1 28.9 Weakly correlated
98 ZNF510 1 99.0 Highly correlated
99 ZNF568 1 99.0 Highly correlated
100 ZNF573 1 94.0 Moderately correlated
101 ZNF586 1 43.0 Weakly correlated
102 ZNF595 1 43.0 Weakly correlated
103 ZNF616 1 43.0 Weakly correlated
104 ZNF641 1 99.0 Highly correlated
105 ZNF700 1 28.9 Weakly correlated
106 ZNF716 1 19.6 Weakly correlated
107 ZNF75A 1 94.0 Moderately correlated
108 ZNF777 1 319.0 Weakly correlated
109 ZNF778 1 74.0 Weakly correlated
110 ZNF780A 1 43.0 Weakly correlated
111 ZNF786 1 99.0 Highly correlated
112 ZNF789 1 99.0 Highly correlated
113 ZNF816 1 28.9 Weakly correlated
114 ZNF81 1 99.0 Highly correlated
115 ZNF85 1 28.9 Weakly correlated
116 ZNF878 1 43.0 Weakly correlated
117 ZNF879 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF485 74 94.0 Moderately correlated
2 ZNF157 65 99.0 Highly correlated
3 ZNF723 48 15.2 Weakly correlated
4 ZIM3 24 87.0 Moderately correlated
5 ZNF479 20 6.4 Weakly correlated
6 ZNF554 15 99.0 Highly correlated
7 ZNF793 12 99.0 Highly correlated
8 ZNF549 11 87.0 Moderately correlated
9 ZNF680 11 28.9 Weakly correlated
10 ZNF382 11 99.0 Highly correlated
11 ZFP37 10 99.0 Highly correlated
12 ZNF317 10 99.0 Highly correlated
13 ZNF506 9 28.9 Weakly correlated
14 ZNF671 9 94.0 Moderately correlated
15 ZNF75D 8 94.0 Moderately correlated
16 ZNF534 8 19.6 Weakly correlated
17 ZNF263 7 180.0 Weakly correlated
18 ZNF679 6 28.9 Weakly correlated
19 ZNF101 6 43.0 Weakly correlated
20 ZNF133 5 99.0 Highly correlated
21 ZNF735 5 28.9 Weakly correlated
22 ZNF766 5 43.0 Weakly correlated
23 ZNF597 5 94.0 Moderately correlated
24 ZNF320 4 28.9 Weakly correlated
25 ZNF429 4 28.9 Weakly correlated
26 ZNF701 4 28.9 Weakly correlated
27 ZNF707 3 74.0 Weakly correlated
28 ZNF197 3 99.0 Highly correlated
29 ZNF528 3 43.0 Weakly correlated
30 ZNF584 3 99.0 Highly correlated
31 ZNF684 3 99.0 Highly correlated
32 ZFP69B 3 99.0 Highly correlated
33 ZNF175 3 94.0 Moderately correlated
34 ZNF202 2 160.0 Weakly correlated
35 ZNF334 2 99.0 Highly correlated
36 ZNF695 2 28.9 Weakly correlated
37 ZNF302 2 43.0 Weakly correlated
38 ZNF394 2 99.0 Highly correlated
39 ZNF440 2 28.9 Weakly correlated
40 ZFP57 2 87.0 Moderately correlated
41 ZKSCAN1 2 160.0 Weakly correlated
42 ZNF585A 2 99.0 Highly correlated
43 ZNF12 2 99.0 Highly correlated
44 ZNF140 2 99.0 Highly correlated
45 ZNF30 1 94.0 Moderately correlated
46 ZNF8 1 99.0 Highly correlated
47 ZNF705B 1 28.9 Weakly correlated
48 ZNF610 1 28.9 Weakly correlated
49 ZNF589 1 28.9 Weakly correlated
50 ZNF100 1 28.9 Weakly correlated
51 ZNF248 1 99.0 Highly correlated
52 ZNF705D 1 28.9 Weakly correlated
53 ZNF700 1 28.9 Weakly correlated
54 ZNF264 1 99.0 Highly correlated
55 ZNF425 1 94.0 Moderately correlated
56 ZNF331 1 94.0 Moderately correlated
57 ZNF789 1 99.0 Highly correlated
58 ZNF84 1 99.0 Highly correlated
59 ZNF780A 1 43.0 Weakly correlated
60 ZNF716 1 19.6 Weakly correlated
61 ZNF257 1 0.0 Weakly correlated
62 ZNF26 1 99.0 Highly correlated
63 ZNF573 1 94.0 Moderately correlated
64 ZNF18 1 160.0 Weakly correlated
65 ZNF417 1 28.9 Weakly correlated
66 ZNF92 1 28.9 Weakly correlated
67 ZNF433 1 43.0 Weakly correlated
68 ZNF468 1 28.9 Weakly correlated
69 ZNF674 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated
2 ZNF157 99.0 Highly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF479 6.4 Weakly correlated
6 ZNF485 94.0 Moderately correlated
7 ZNF534 19.6 Weakly correlated
8 ZNF549 87.0 Moderately correlated
9 ZNF554 99.0 Highly correlated
10 ZNF671 94.0 Moderately correlated
11 ZNF680 28.9 Weakly correlated
12 ZNF723 15.2 Weakly correlated
13 ZNF75D 94.0 Moderately correlated
14 ZNF793 99.0 Highly correlated