ZRdb KZFP & Repeats
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LTR_ERV3-16A3_LTR

  • Name
    ERV3-16A3_LTR
  • Repbase
    ERV3-16A3_LTR
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000117
Description :

Associated with ERV3-16A3_I.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcagccacggaggtgcgccgctcggatctcccttcaagaaagaacttgccgttcagctgcgaggagtgcggttagctgacagcctccagctgttagcgccttcaggatccgcctcagctttcgagccgaggccacgctcttcccgggcagcccccagccaatgactgagcanggcgggggtacnagggcctggccatttctgcccaacgcgggactcctctaacgggcaatctttgctccggaagagctccccgttgggttggccgagactttgtcagatctgcatcgcggtctgaggctctccctgcccaatcctgcttcctctccttttntctttcacaggcgttaccccccaataaacctcttgcactcctaactccgtctcagcgtctgcttcccggaggacccaactgacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 28 180.0 Weakly correlated
2 ZNF382 27 99.0 Highly correlated
3 ZNF680 23 28.9 Weakly correlated
4 ZNF766 21 43.0 Weakly correlated
5 ZNF679 14 28.9 Weakly correlated
6 ZKSCAN1 13 160.0 Weakly correlated
7 ZNF589 12 28.9 Weakly correlated
8 ZNF394 9 99.0 Highly correlated
9 ZNF554 9 99.0 Highly correlated
10 ZNF274 9 99.0 Highly correlated
11 ZNF534 7 19.6 Weakly correlated
12 ZNF317 7 99.0 Highly correlated
13 ZNF92 6 28.9 Weakly correlated
14 ZNF479 6 6.4 Weakly correlated
15 ZNF558 6 99.0 Highly correlated
16 ZNF175 6 94.0 Moderately correlated
17 ZNF140 5 99.0 Highly correlated
18 ZFP37 5 99.0 Highly correlated
19 ZNF793 5 99.0 Highly correlated
20 ZNF28 5 28.9 Weakly correlated
21 ZNF273 5 28.9 Weakly correlated
22 ZNF257 5 0.0 Weakly correlated
23 ZNF75D 4 94.0 Moderately correlated
24 ZNF705B 4 28.9 Weakly correlated
25 ZNF2 4 99.0 Highly correlated
26 ZNF101 4 43.0 Weakly correlated
27 ZKSCAN8 4 160.0 Weakly correlated
28 ZNF197 4 99.0 Highly correlated
29 ZNF18 4 160.0 Weakly correlated
30 ZFP69B 4 99.0 Highly correlated
31 ZFP57 4 87.0 Moderately correlated
32 ZNF528 3 43.0 Weakly correlated
33 ZNF485 3 94.0 Moderately correlated
34 ZNF547 3 74.0 Weakly correlated
35 ZNF584 3 99.0 Highly correlated
36 ZNF597 3 94.0 Moderately correlated
37 ZNF264 3 99.0 Highly correlated
38 ZNF792 2 94.0 Moderately correlated
39 ZNF723 2 15.2 Weakly correlated
40 ZNF705D 2 28.9 Weakly correlated
41 ZNF157 2 99.0 Highly correlated
42 ZNF701 2 28.9 Weakly correlated
43 ZNF684 2 99.0 Highly correlated
44 ZNF133 2 99.0 Highly correlated
45 ZNF641 2 99.0 Highly correlated
46 ZNF780A 2 43.0 Weakly correlated
47 ZNF610 2 28.9 Weakly correlated
48 ZIM3 2 87.0 Moderately correlated
49 ZNF585B 2 99.0 Highly correlated
50 ZNF563 2 28.9 Weakly correlated
51 ZNF320 2 28.9 Weakly correlated
52 ZNF324 2 99.0 Highly correlated
53 ZNF331 2 94.0 Moderately correlated
54 ZNF506 2 28.9 Weakly correlated
55 ZFP28 2 99.0 Highly correlated
56 ZNF17 1 69.0 Weakly correlated
57 ZNF786 1 99.0 Highly correlated
58 ZNF845 1 28.9 Weakly correlated
59 ZNF778 1 74.0 Weakly correlated
60 ZNF8 1 99.0 Highly correlated
61 ZNF91 1 6.0 Weakly correlated
62 ZNF141 1 43.0 Weakly correlated
63 ZNF735 1 28.9 Weakly correlated
64 ZNF707 1 74.0 Weakly correlated
65 ZNF468 1 28.9 Weakly correlated
66 ZNF182 1 99.0 Highly correlated
67 ZNF611 1 19.6 Weakly correlated
68 ZNF189 1 99.0 Highly correlated
69 ZNF251 1 94.0 Moderately correlated
70 ZNF587 1 28.9 Weakly correlated
71 ZNF562 1 28.9 Weakly correlated
72 ZNF425 1 94.0 Moderately correlated
73 ZNF429 1 28.9 Weakly correlated
74 PRDM9 1 0.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 8 180.0 Weakly correlated
2 ZNF766 5 43.0 Weakly correlated
3 ZNF680 5 28.9 Weakly correlated
4 ZNF793 3 99.0 Highly correlated
5 ZNF534 3 19.6 Weakly correlated
6 ZNF28 3 28.9 Weakly correlated
7 ZNF485 3 94.0 Moderately correlated
8 ZNF133 2 99.0 Highly correlated
9 ZNF479 2 6.4 Weakly correlated
10 ZNF274 2 99.0 Highly correlated
11 ZNF273 2 28.9 Weakly correlated
12 ZNF563 1 28.9 Weakly correlated
13 ZNF684 1 99.0 Highly correlated
14 ZNF735 1 28.9 Weakly correlated
15 ZNF2 1 99.0 Highly correlated
16 ZNF382 1 99.0 Highly correlated
17 ZNF75D 1 94.0 Moderately correlated
18 ZNF587 1 28.9 Weakly correlated
19 ZNF597 1 94.0 Moderately correlated
20 ZNF705D 1 28.9 Weakly correlated
21 ZNF723 1 15.2 Weakly correlated
22 ZNF506 1 28.9 Weakly correlated
23 ZNF320 1 28.9 Weakly correlated
24 ZNF554 1 99.0 Highly correlated
25 ZFP57 1 87.0 Moderately correlated
26 ZNF257 1 0.0 Weakly correlated
27 ZNF780A 1 43.0 Weakly correlated
28 ZNF197 1 99.0 Highly correlated
29 ZNF175 1 94.0 Moderately correlated
30 ZNF589 1 28.9 Weakly correlated
31 ZNF705B 1 28.9 Weakly correlated
32 ZNF141 1 43.0 Weakly correlated
33 ZKSCAN1 1 160.0 Weakly correlated
34 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated