ZRdb KZFP & Repeats
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LTR_ERV3-16A3_I

  • Name
    ERV3-16A3_I
  • Repbase
    ERV3-16A3_I
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000116
Description :

Reconstructed from the human genome, but it's shared by all placentalmammals.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
catgagtggtaccgggagtggtccgnagaaaacaggcggtaagatggggttttgggactggctcactcaccgcccggcggacagaggataccatcctggcacaaggtggcggcccagttgctaaagatttcaccggtggtgacctgggaaaatgtgtcccagnnnttggaaggggaatgcccttgcaggtgcaatgattcaggcatttgaaagatatggggaganaatgcctacaaggacagcggagttggctggttattgctaagttgtattgatgccctgcagagggataatgagaaactgagggcngttaacaagcagttaaaggctaagtgtgagagccagagggcctctttgntggtagcttacaaagaggcccttatctcctgcagtggaagagcagacanagctgaggagcagactcaggatctaatagttagagtcgcagagctccagagacgtttgaatgctcagccaaggcgaggtctgttatgctaaagntaaggcccttggttgggaaaacctgggacggaacacgggatggggacatctgggtggatgcccccgaagatnttggctctccagactcctctgaaccctcngagcctgcagaagtggcccacccctccctantaagagctagcactcctcttgcgcccgcgctggaagacgntgcagaggcctctccccgcaaggcaacaggtgccccctctcagganctgcccccacctcccctcctggccgccaggccgataactagggttaagtcncagcataacccggctggggacgtgctgggcctgataagggaggaaagggactataccccaaaggagctgcaagaattagccagcatgtaccggcaggagccaggggagtatacncntgggactggattttgagggtgcttgatcaagggggccggaatataagcggtaagactggataanggaagaatttattgacttgggagcactttctcgggatacaggatttaacaccctggcaaggaccccaggagatggtgcaaactcgctgctaggatggctcctagaagcgagaaaaatggcccacgctgagcgaagtngaaatgccngaattgccntggcagacggtagaggaagggattaaaggctcagggaagtgggcatgctggaatggatatnattatgtaaggccggaagacccaccagangattatgttccacgggagggcccacaccattcaccaaggccatnaggaatgcgctggtgagaggggcaccagcanntcactaagaagttcagtggtggctctcctctgcaggccagggctgacggtaggagaggccgttacagaactgggctcgctgatagcaatggggatgataggaccccgaaacaatagaggccaggtggcggcgcttaaccgccagaagccaggnggncgcaattatcgtaatgaccggaaggtcggagtggcagccaagggggcctgacccaagagagttgtggagatggttaatagaacacggcgtccctaggggcaaaatagatngacaagggtgctgcttaacttgtaacagcagaaaaaatctgggaggctgagggcggtcgccccaataaaaaagtcacgatcccttgcccagtttccggacctgagccagttttcagacccggaacccattgactgaagaggnggccgggtccccaggaggaaggacactgcaatgattcttctcnttcctcccgnagggacctatggccatttactcgggtaactgtacactggggaaagggaatacccagacatttcgaggactgttggacacagggtctgagttgacattgatacccggagacccgaagcgtcatcatggccccctgttagagtgggggcatatgggggccaggtaataaatggagtcctggccaaggtccggctcacagtgggtccactgggtccangaacccagtggtcatttccccggtccccgaatgtataattgggtagttggagtaacccccacattggntccttggcctgtggggtaagagctatcatagtggggaaggccaagtggaagcctctgaaactgcccnccnccnccattcctagccaagatagtaaattattatatcctctcgaggaagtggcggatgcagattagtgccaccnttaaagacctaaaggatgcaggggtggtggtccccatcatatctccatttaattcaccagtctggcccctgcagaaaccggatggatcctggagaatgacngtagactaccgcaaactcaaccaagtagtagccccgattgcagctgctgtgccagatgtggtatctttgctagagcagattaacacggcctcaggtacatggtatgcggccattgatttggcgaatgcgttcttttccattccnatcagaaaagaggatcagaaacattcacatgaacaggaaanaatatacatttacagttttgccccagggctatgttatcttctcctctgtcataataagtccgaagagatctggaccgtctggacatcccgcagaacatcacattgatccattacatcgatgacatcatgctgatcggacnggatgagcaagaggtggctacgttaggccttggtaagacacatgcgctgagggtggagataaccctacgaagattcagcgnnnggacctgccacntcagtaaagtttttaggggtccagtggtcnggggcatgccgggacatcccctccaaagtaaaagacaaattgttgcatcttgcatctcctaccacgaagaaggaagcacaacgcctggtaggcctctttgggttctggaggcagcatattccacacctgggaatactgctccggcccatntaccgggtgacacggaaggctgccagctttgagtgggcccagagcaggaaagggctctgcagcaggtccaggctgcggtgcaagcagccctgccgcttgggccatacgacccggcagaccctatggtgttggaggtgtcagtggtgggaaaagatgcngtgtggagtttatggcaagccccagtgggagaatcacaacgcaggcccctggggttctggagcaaggctgcaagtcttttgaaaaacagctcttnnnatgctactggtagaganggaacgcttaccatgggacaccaagtgacacgnancaaaatgtaccccgtcatgagctgggttctgtcggacccaccaagtcataaggtcgggcgggcccagcagcaatccatcgtaagatggaagtggtacatccgggatcgagcacgaggaggaccacaagtaagctgcatgagcaggtagcccagacccccatgtcacccaccacngttgcaccagcgctccttcagctcacacctatggccgtatggagnagaggtgtgntcctgatcgaccagctgaaggaggaggaaaaangcccgagcttggttcacggatgggtcggctcggtatgtgggtgcaagccgaaaatggacggcggcttgcactacagccncactcaggggtggccttgaaagacagtggngagggaaaatcttcccaatgggcagagcttcgggcggtgcacctggtcatccactttgtgtggaaggagaagtggcccgaggtnagaatatatacggactcatgggcagtggcgaatggcttggccggctggtcaggggcctggaaggagaaagattggaagatcggagacaaggaggtctggggantagaggcatgtggatggacntatgggagtgggcacgaagtgtgaagatctttgtatcacatgttaacgcccaccagagagcatccaccacggaagaggcactaaacaaccaagtagacaaaatgactcggccagttgacgtcagccagcctctgtcatcggccaccccangtgctggcacaatgggcacatgaacggagtggccacggtggcagagatggaggctacgcatgggcccaacagcatggactcccactcaccaaggctgatctagctacttgctgccncnnctgaatgtccaacctgccagcaacagagaccgatccccgatatggcaccattcctcgaggagaccaaccagccacttggtggcaagttgactacattgggccccttccatcctggaagggncagcggttcatcctnacaggaatacatattccgggtatgggtttgcctttcctgcccgcagggcctcagccagcaccactatccgagggcttacggagtgcctgatccacnggcatgggatcccacacaacatngcatcngaccagggacccactttacagcaaaggaggtgcgggagtgggcccatgaccatgggatccactggtcntatcacataccgcaccatccagaagctgccggcctgatagagcgntggaacggcctnctgaaggcacagctgaagcgccagctcggagacgatactctgcgaggatggggcgccatccttcaggatgcagtgtccccaataggaagaatacatgggtccgggaaccaaggggtggaagcaggagtgtngccccacttaccatcactcccagtgacccactgggggantttgtgcttcccgtccccgcaactctgggctctgcaggnttagaggtcctggtccccaaagggggnacgctctcgccaggggacacagcgtcccattgaactntanagctacggctgccgcctgggcactttgggctccttgtgtccagggaccagcaggcaagaagaggagtcaccatcttggcaggggtaattgaccctgatcatcaggaggaggtagggctgctnttacacaatgggggcagggaggaatacgtntggaacccaggtgatccacttgggcgcctcttggtactcccttgcccaattntgactgtaaatggacaagtgcagcaaccccggcctgagaagggcatggtnaccaggggctcagacccctcaggaatgagggtctgggtcacgccaccaggtaagccaccgagaccagcagagtgntagctgagggtgaggggaatctagaatggatagtggaggagggagacgatgagtatcagttgcggccccgagaccaactgagcgacgggggctgtagttcgtcccactaacctccctcttctaagtttccctcaggaagagaggcccacnggaatcctggaggagctgctcctgaaccgaacgtgtatggagaagtggatccgngcggcgcaaggggtggac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 420 99.0 Highly correlated
2 ZNF766 121 43.0 Weakly correlated
3 ZNF263 113 180.0 Weakly correlated
4 ZNF479 78 6.4 Weakly correlated
5 ZIM3 77 87.0 Moderately correlated
6 ZNF680 65 28.9 Weakly correlated
7 ZNF679 64 28.9 Weakly correlated
8 ZNF394 61 99.0 Highly correlated
9 ZNF723 56 15.2 Weakly correlated
10 ZNF317 55 99.0 Highly correlated
11 ZNF589 53 28.9 Weakly correlated
12 ZFP37 52 99.0 Highly correlated
13 ZNF175 50 94.0 Moderately correlated
14 ZFP69B 45 99.0 Highly correlated
15 ZNF320 44 28.9 Weakly correlated
16 ZNF2 39 99.0 Highly correlated
17 ZNF554 39 99.0 Highly correlated
18 ZKSCAN1 38 160.0 Weakly correlated
19 ZNF584 36 99.0 Highly correlated
20 ZKSCAN8 34 160.0 Weakly correlated
21 ZNF101 30 43.0 Weakly correlated
22 ZNF257 27 0.0 Weakly correlated
23 ZNF534 27 19.6 Weakly correlated
24 ZNF197 26 99.0 Highly correlated
25 ZNF331 25 94.0 Moderately correlated
26 ZNF701 24 28.9 Weakly correlated
27 ZNF324 23 99.0 Highly correlated
28 ZNF485 23 94.0 Moderately correlated
29 ZNF558 23 99.0 Highly correlated
30 ZNF75D 23 94.0 Moderately correlated
31 ZNF18 22 160.0 Weakly correlated
32 ZNF793 20 99.0 Highly correlated
33 ZNF274 19 99.0 Highly correlated
34 ZNF684 19 99.0 Highly correlated
35 ZNF506 18 28.9 Weakly correlated
36 ZNF705B 16 28.9 Weakly correlated
37 ZNF133 14 99.0 Highly correlated
38 ZNF157 14 99.0 Highly correlated
39 ZNF597 14 94.0 Moderately correlated
40 ZNF251 13 94.0 Moderately correlated
41 ZNF28 13 28.9 Weakly correlated
42 ZFP57 12 87.0 Moderately correlated
43 ZNF610 12 28.9 Weakly correlated
44 ZNF486 11 8.6 Weakly correlated
45 ZNF273 9 28.9 Weakly correlated
46 ZNF429 8 28.9 Weakly correlated
47 ZNF674 8 99.0 Highly correlated
48 ZNF735 8 28.9 Weakly correlated
49 ZNF140 7 99.0 Highly correlated
50 ZNF519 7 19.6 Weakly correlated
51 ZNF528 7 43.0 Weakly correlated
52 ZNF707 7 74.0 Weakly correlated
53 ZNF264 6 99.0 Highly correlated
54 ZNF585A 6 99.0 Highly correlated
55 ZNF700 6 28.9 Weakly correlated
56 ZNF705D 6 28.9 Weakly correlated
57 ZNF792 6 94.0 Moderately correlated
58 ZNF100 5 28.9 Weakly correlated
59 ZNF141 5 43.0 Weakly correlated
60 ZNF248 5 99.0 Highly correlated
61 ZNF425 5 94.0 Moderately correlated
62 ZNF563 5 28.9 Weakly correlated
63 ZNF808 5 19.6 Weakly correlated
64 ZNF177 4 94.0 Moderately correlated
65 ZNF26 4 99.0 Highly correlated
66 ZNF334 4 99.0 Highly correlated
67 ZNF33A 4 99.0 Highly correlated
68 ZNF441 4 43.0 Weakly correlated
69 ZNF445 4 99.0 Highly correlated
70 ZNF490 4 43.0 Weakly correlated
71 ZNF549 4 87.0 Moderately correlated
72 ZNF559 4 74.0 Weakly correlated
73 ZNF560 4 43.0 Weakly correlated
74 ZNF671 4 94.0 Moderately correlated
75 ZNF778 4 74.0 Weakly correlated
76 ZNF789 4 99.0 Highly correlated
77 ZFP28 3 99.0 Highly correlated
78 ZNF211 3 94.0 Moderately correlated
79 ZNF234 3 99.0 Highly correlated
80 ZNF41 3 99.0 Highly correlated
81 ZNF471 3 94.0 Moderately correlated
82 ZNF483 3 99.0 Highly correlated
83 ZNF514 3 94.0 Moderately correlated
84 ZNF544 3 0.0 Weakly correlated
85 ZNF585B 3 99.0 Highly correlated
86 ZNF66 3 0.0 Weakly correlated
87 ZNF677 3 99.0 Highly correlated
88 ZNF682 3 28.9 Weakly correlated
89 ZNF747 3 43.0 Weakly correlated
90 ZNF763 3 15.2 Weakly correlated
91 ZNF786 3 99.0 Highly correlated
92 ZNF816 3 28.9 Weakly correlated
93 ZNF845 3 28.9 Weakly correlated
94 ZNF92 3 28.9 Weakly correlated
95 ZFP30 2 99.0 Highly correlated
96 ZNF224 2 69.0 Weakly correlated
97 ZNF253 2 19.6 Weakly correlated
98 ZNF284 2 43.0 Weakly correlated
99 ZNF420 2 94.0 Moderately correlated
100 ZNF440 2 28.9 Weakly correlated
101 ZNF468 2 28.9 Weakly correlated
102 ZNF510 2 99.0 Highly correlated
103 ZNF547 2 74.0 Weakly correlated
104 ZNF565 2 99.0 Highly correlated
105 ZNF716 2 19.6 Weakly correlated
106 ZNF718 2 19.6 Weakly correlated
107 ZNF772 2 94.0 Moderately correlated
108 ZNF813 2 28.9 Weakly correlated
109 ZNF8 2 99.0 Highly correlated
110 PRDM9 1 0.0 Weakly correlated
111 ZKSCAN5 1 160.0 Weakly correlated
112 ZNF132 1 94.0 Moderately correlated
113 ZNF160 1 74.0 Weakly correlated
114 ZNF169 1 94.0 Moderately correlated
115 ZNF182 1 99.0 Highly correlated
116 ZNF189 1 99.0 Highly correlated
117 ZNF202 1 160.0 Weakly correlated
118 ZNF230 1 28.9 Weakly correlated
119 ZNF286A 1 160.0 Weakly correlated
120 ZNF337 1 43.0 Weakly correlated
121 ZNF383 1 99.0 Highly correlated
122 ZNF433 1 43.0 Weakly correlated
123 ZNF446 1 94.0 Moderately correlated
124 ZNF44 1 43.0 Weakly correlated
125 ZNF461 1 99.0 Highly correlated
126 ZNF480 1 43.0 Weakly correlated
127 ZNF500 1 160.0 Weakly correlated
128 ZNF543 1 99.0 Highly correlated
129 ZNF551 1 94.0 Moderately correlated
130 ZNF567 1 99.0 Highly correlated
131 ZNF583 1 99.0 Highly correlated
132 ZNF607 1 43.0 Weakly correlated
133 ZNF613 1 99.0 Highly correlated
134 ZNF626 1 0.0 Weakly correlated
135 ZNF658 1 99.0 Highly correlated
136 ZNF689 1 99.0 Highly correlated
137 ZNF695 1 28.9 Weakly correlated
138 ZNF699 1 99.0 Highly correlated
139 ZNF705E 1 0.0 Weakly correlated
140 ZNF726 1 28.9 Weakly correlated
141 ZNF727 1 19.6 Weakly correlated
142 ZNF730 1 19.6 Weakly correlated
143 ZNF75A 1 94.0 Moderately correlated
144 ZNF765 1 8.6 Weakly correlated
145 ZNF777 1 319.0 Weakly correlated
146 ZNF780A 1 43.0 Weakly correlated
147 ZNF780B 1 74.0 Weakly correlated
148 ZNF823 1 43.0 Weakly correlated
149 ZNF846 1 74.0 Weakly correlated
150 ZNF84 1 99.0 Highly correlated
151 ZNF850 1 28.9 Weakly correlated
152 ZNF852 1 94.0 Moderately correlated
153 ZNF91 1 6.0 Weakly correlated
154 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 51 6.4 Weakly correlated
2 ZIM3 40 87.0 Moderately correlated
3 ZNF263 36 180.0 Weakly correlated
4 ZNF723 36 15.2 Weakly correlated
5 ZNF534 20 19.6 Weakly correlated
6 ZNF680 20 28.9 Weakly correlated
7 ZNF485 19 94.0 Moderately correlated
8 ZNF382 19 99.0 Highly correlated
9 ZNF684 17 99.0 Highly correlated
10 ZNF554 16 99.0 Highly correlated
11 ZNF320 13 28.9 Weakly correlated
12 ZNF331 13 94.0 Moderately correlated
13 ZNF793 12 99.0 Highly correlated
14 ZNF506 12 28.9 Weakly correlated
15 ZNF75D 11 94.0 Moderately correlated
16 ZNF257 9 0.0 Weakly correlated
17 ZNF317 8 99.0 Highly correlated
18 ZFP37 8 99.0 Highly correlated
19 ZNF101 8 43.0 Weakly correlated
20 ZNF133 8 99.0 Highly correlated
21 ZNF679 7 28.9 Weakly correlated
22 ZNF735 6 28.9 Weakly correlated
23 ZNF766 6 43.0 Weakly correlated
24 ZNF197 5 99.0 Highly correlated
25 ZNF589 5 28.9 Weakly correlated
26 ZKSCAN1 5 160.0 Weakly correlated
27 ZNF157 5 99.0 Highly correlated
28 ZNF141 4 43.0 Weakly correlated
29 ZNF674 4 99.0 Highly correlated
30 ZNF429 4 28.9 Weakly correlated
31 ZNF2 4 99.0 Highly correlated
32 ZNF792 3 94.0 Moderately correlated
33 ZNF28 3 28.9 Weakly correlated
34 ZNF584 3 99.0 Highly correlated
35 ZNF789 3 99.0 Highly correlated
36 ZFP69B 3 99.0 Highly correlated
37 ZNF490 3 43.0 Weakly correlated
38 ZNF816 2 28.9 Weakly correlated
39 ZFP57 2 87.0 Moderately correlated
40 ZNF716 2 19.6 Weakly correlated
41 ZNF558 2 99.0 Highly correlated
42 ZKSCAN8 2 160.0 Weakly correlated
43 ZNF324 2 99.0 Highly correlated
44 ZNF100 2 28.9 Weakly correlated
45 ZNF549 2 87.0 Moderately correlated
46 ZNF677 2 99.0 Highly correlated
47 ZNF597 2 94.0 Moderately correlated
48 ZNF211 2 94.0 Moderately correlated
49 ZFP30 2 99.0 Highly correlated
50 ZNF701 2 28.9 Weakly correlated
51 ZNF585A 2 99.0 Highly correlated
52 ZNF273 1 28.9 Weakly correlated
53 ZNF707 1 74.0 Weakly correlated
54 ZNF626 1 0.0 Weakly correlated
55 ZNF700 1 28.9 Weakly correlated
56 ZNF41 1 99.0 Highly correlated
57 ZNF264 1 99.0 Highly correlated
58 ZNF75A 1 94.0 Moderately correlated
59 ZNF274 1 99.0 Highly correlated
60 ZNF140 1 99.0 Highly correlated
61 ZNF251 1 94.0 Moderately correlated
62 ZNF528 1 43.0 Weakly correlated
63 ZNF26 1 99.0 Highly correlated
64 ZNF248 1 99.0 Highly correlated
65 ZNF440 1 28.9 Weakly correlated
66 ZNF486 1 8.6 Weakly correlated
67 ZNF543 1 99.0 Highly correlated
68 ZNF18 1 160.0 Weakly correlated
69 ZNF334 1 99.0 Highly correlated
70 ZNF471 1 94.0 Moderately correlated
71 ZNF780A 1 43.0 Weakly correlated
72 ZNF175 1 94.0 Moderately correlated
73 ZNF483 1 99.0 Highly correlated
74 ZNF846 1 74.0 Weakly correlated
75 ZNF610 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated
2 ZIM3 87.0 Moderately correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF317 99.0 Highly correlated
6 ZNF485 94.0 Moderately correlated
7 ZNF506 28.9 Weakly correlated
8 ZNF534 19.6 Weakly correlated
9 ZNF554 99.0 Highly correlated
10 ZNF679 28.9 Weakly correlated
11 ZNF680 28.9 Weakly correlated
12 ZNF75D 94.0 Moderately correlated
13 ZNF793 99.0 Highly correlated