ZRdb KZFP & Repeats
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LTR_ERV24_PRIM

  • Name
    ERV24_PRIM
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000115
Description :

Endogenous element with LTR24 LTRs. ORFs: (roughly) gag 899-2224, pol2228-5926, env 5961-7358. Pol product 78% similar to that of PRIMA4 and69% similar to that of ERV8_MD. Env is 85% similar to that of PRIMA4.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttttggcgaccnngangggacccgaagcggacctccagtgatccccgtcacttcgccgacagccggagccttggtaccagcacgaacgactttcgttcacccgacctcgccggagtcagcggggatctctggtaaggcccctctcgggntccgaatcctcccggctttggttgaggattcagactttattcgagctacacacattcctaactcgacggggttggaattgaagctctactgcaaggtaggagtttcatttgttattctctagagattctgctgatcgcagatttgtgattttcacttttctctgaggttaaggttttgtttggaattactcnttagagtttttacaaccttttctctcattcgaaattttggtcagggagaaaacagtttctctctgaaaagaggaagtgaatctttgtggcttaagcaaaaatttgtaatctttaaaactggccagattctgaagctcggttcaattgacaaatctaaactttcttcttgagtgaccaaaattataaaaggctctctatgaggacgagataagtcccgaagataagagacactgctcctcccggccgaaaggcgccttaggtgactaaggtcttgcgggggtgtcggagtttatcgcccatgatgtgnagcggcctcacagggnatcccttaagaagaacatncaggganccttgcttaatccggngggcgcacataaaggnttggtcacccggcgccttaagcacccaagtctcttgggatcaccgagacacgtaagagggaagaaccgactcangggtgacaccttgaggagcgacgcccacaagcagcacactcgacccaaaacacntcccactaggtctttggtcattcaaaaggaaagtctaaattatgggnaatcgngcttctaaaaccgagtcttcctccttaaggagagatccaccnttagaaacaccagctggatttatgtntaacacttatggcgcctcttcntgcaaatatctaggaaaatggncccacntaactcgggatgaccccaaactacaatggccaaaatggggnncctttgaaatgcctaaantaatttatttgcgcgcncaattggaaaaagctggctttagaatnagacaaantgaatgggaganctactttcaatggtacctagaagcttctaaaagaggttctganaaagtcgcttccttgcaggaggnaaacaaaagattgtctgaaacnatttctgaattgaaaaagactgcngaagtttctcctccttctccagctcctccttctcttttgtcagaacttccttgtctggacttacctcctcttcctcctcctcctccttcttctgctgttctggctccatttcgggaataccctgtgtccggtagaggagaacctgccttggtttatcaaccatggtcaaaagtagaacttaaaggcataattaaagaattcccngatcctctccaagatcctattggatttgctagagaattcganttaancgttcaaacttatgancccggatnttctgatctntatcaattgattcacatgttggtgtnagaaagcaaagccaangantggntagnaaaggcaaattggaanaatcctttagaggactttcanaaatnnnctgaagcagatcgtgaangggcccgcantnctgccaaagctttncnngatgctatcccccnagttttccaaaaagtagttgattggaacaaaatncagcaatgccgacaaaatcttgatgagcctgtaatgtcatactatgaaagatttgaaaaaacgtttaaacaatattcaggcctatcagaagaaagttatgctaaccaccaaaatgatactctccttaactcaaactttataaatggattagatgaagaattggcaattataataaagagacaacgccccagttgggctacctctcaaactcatgatctagttaattttgccgatcaaatgtcccgtaccctaaccaaggaagaaaaggaaaggaaagttaaacagaaaggaaaagcaaataagatcatgagtttacaactaaaacaattgtccaaccaatttgtaacccctaaacggcctaataagttccaaaaccgacccaatcccccgctttgcaattactgcaaaaagcctggacatttcaaaaaggattgtagaaaattaaaatggaaagaacagcaacaggccaaagaaaaagaagaatagggatgctccgaggaaatcaaagggactttcccctttctcctnactaatgccttaggagaaatngaaattaatttaaatggagaacanacacgagcccttattgacactggagctacgttntcagtnntnaaccccaccttattacaaggtcccnttcctcggagtaaaaaaacaatacaaatggtgggngtaacaaatactcctatancagcatataaatctcaacctntagtttttcagttaggncccctacagggaacncatgttttcctcttggttccctcggcccccatncatctnntaggnagagactttttggaattncacaatgcncacatttccttctctcaaaagggggaaatgtatttagaattagaagataaaatagaattattaggttcgaaaattttttcaaaatctgatncttttaattcacaaattgcaattcatattgccatggaggaaactaaattgttaaataatgaagaattacaagagctgttaaaaatagtacctgatcanttgtggncaaaatcttccactgatattgggaaaattatctcggcngccccnattaaaattcaaatagatccatcnaaacctctnccnaaccttaancaataccctctaagaccagaggcctcggaagggatnagacctataatttnggattatataaaaagaggcttnattattccttgcacnagcccntgtaacactccaatcctnccngtnagaaaaccaaatggnngaggatggagatttgtncaggatctnagagcnattaataanatngtnatncctcgacntccngtagtaccaaacccnnatacnttgttgactgccatcccaactgaaggtgagttcttcactgtaatagacctntgcngtgcnttctttagcattcctgtngataaaganagtcaatntctntttgccttcacttgggaagacagacaatacacctggacngtnatgcctcaggggtntactgagagcccnacttatttttcncaaatattaaaagcagacctntcggatgtcganttccctnagaantccaccttgatncagtatgtagatgatttacttctctgctcannggataagcaagcctccanagaggacggaattcacctnttacaacaattagcttcaaagggacacaaggtttcaaaagaaaaacttcagttctgtcaaaaacaagtnaaatatttaggncacctaatntcaaaggaaggcctttttatcaatccgganagaataaaaggaatattggccttccctancccnaaaactaagaaacaactgagaggatttctgggattggcaggatactgcaganattggattccaaacttctccttaanagctcaacctttatatactctcttaaaacaagataagccagaccccctggaatggacagaggaaaatcagttaacatcggaagaaattaaaaagagtcttacagatgccccagcnttaggacatccaaattatantattccnttttcnttgttcgttcatgaaaatcagggaaatgccttaggngttctnactcaaaaacatggngatcaaaatagacccgtnggatactatagtcagcaactggacccngtggctaaaggattgccaccttgcntgagagcagtaacngcnacngccntgttagtaaaagcnaccgaagaaatagtnatgggatctcccctcaccgtctntgttccacattctgtggaagcncttctaaactcgcaccacactcaacattnttcggttagtagactnacttcttatgaagttcttctnctttctgctccccatattacnatctccagatgtaataatctnaaccctgccactcttctgcccctgccttcagatgaaacgccacatgattgcataatcttaaccgaccagcttctctctcctagganggacctacaagaaactccccttactaacgctgatgttatttggtttacggatggntcttacttaaaggacgaatctggaanttatcgggcaggntatgctatagcatctttaactgaggnaatagaaagcgctcntcttccaggagcnanntcggcccaacaggcagagttaatngcnctnactngagcctgtcaattggcnaaaggaanaactgctaatatttatacagatagcagatatgctttcggagtagctcatgattttggnatgctatggaaacaaagaggatttctnacctcttccggtcagcccataaaaaatggacaccntgtttcagaattactggaagccatactattgccaaaatcattagccattatcaaaattccnggccattcaaagncagacactncagaaagcaaaggaaatcanttagcngatantacagcaaaaagngctgccctaaatgtatctgaacaagaaaatcaacccattttagcttttaaggaagcacttgattttgatataaaattagctcaatccaaagctccaaaaacagaacaagaaaattgggaaacaaaagggggaacgtactcctccgagactgggctatggtatggaccaaacggtctacccatacttccaaccaaattacagtcgtctttcttaacttatgtncatgatttaactcattggagccccganaaaatgattgcttggggaaaacaatactattggaaaccttctccaactgttgctcanaaggtatacaatcgctgccatatctgcccaaaacataatccngggaaacctttacatagttctcaaggtcattttcctttaccagaaggccctttcgaggtatggcaantggattttattcagctgccgccatcncaaggatacgagtatgttctngtnatggtttgtatgttttctcattgggtagaagcatttccntgcagaagagcnacggccttagcagtaggtaaaattctnttagaaaaaattattccnncttggggagttcctctagaactccacagcgacngaggnactcattttactggacaagtaatncagtcagtntgtaaaatctggcccattctncaacatttccattgtgcctatcacccccagtcntctggactggtggaacgnacaaatggaataatnaaaactcaattggcaaagttnacngaagcttttaaanttccttggccaaaggctcttccattggtnttgcttaacctaagatcnaccccntttggaaaacaccagctntctccntttgaaatnataacaggnaggcctatgaanctgnctccaggaanttntgaacctacgntattaaaaggngatatnctncattattgcnanggccttataaggcanctaactaaaaactntaanttagtaaaagantctttccacagcgagctcccgggagacgaaganctcaaagatcacggnctccaaccnggagattttgtctattggaaacgacatcnantaaaggactccctccaaccncgntggaagggnccttatcaggtgctnttaaccaatccttgtgctgctaagctaaagggnattgactcctggatacacgtnnctcatctaaagaaagccgctttgccaatttggacttcatctcaaaccggtgatctaaaattgaaattctccagaaccaacaaggatgagaaaaagacgacatccgaggtagacagctttcccaagacaccggaccaggcctgtatctaaacgaacgcttaatattaataatcgttaatagatggagaaggtcttcctttgcaagttcccactaaatttctttcttttcgtccctagttcttatgttttgtcgctactatcaccagctgttgcccatgaagcaaacctcttcttgcaatgggctcaagactatgctaacggattacagaaaaacacttgttgggtatgcggcctcatgcccctttccggtggttctggcctaccgtggtgggtatctcctttccaaggacgagattggatagaatatcagaaatatatcngtgtttctcaagaacagtcatcggtgcttaacactagtatgactaaggatgacgtacatcactggcctattaataatactttacaaagcaaaggacatgggaagagcttttcggtaaangaaaccagttcgttagctttaacgctggcgctgccccaactgagagataagacaactcgatttcgggatggtataacacaaatttgggacggttttatctggcttaccccctcttttggtcagcttagtcagcttgcccctttatgttgggaacaaaagaatcacaccaaagatacatggcccaatagcactagagatatgggatggatacccaaggaacagtgtatccacaccattatattacaaagtactgattggcatgccactgaatgggcacagcgaccgggtatttattggctagctccaaatggaacgtcttggctgtgcggcaccaatctatggccntggttacccccaggatggttaggacggtgttctttgggttatgcctgggcacaaggtcgaatagttcataccctttcaaagcctgcaaatcttcctcatttacaatctcgttgggttcgttctgtattccattggtatgatcatttagcttccatctttctgccacaactgggtattgaggatgtcatttggcatgtagaggccctaaccaattacacanaaaaggccctaaatgatagccgcatgggtatctcgttattaaacaatgaagttgctcttatgagaaaggctgtattacagaaccgtatggctttagacatactcactgcagcccaagggggaacctgcgcnatcataaaaactgagtgttgtgtctatatcccagatgaatcagataacatcactaaattaatggctgatatgaaaacccaaataactaacctttcagatccaacaccctctctaaacgattggctaagcagctggtttggatcttggggaacctggtggcagaagctgttacttattctaggaattataatcatttgttgcgttttgtcctgtttttgtctttactgctgctgcggcatttgtttgcaatggagtcaacgcacaactgaaaaaactaaaataatggtcgctcaaagaattgcattaattgaagatgcagccgtgtagcctgactcaggtcacaaagtcacttccttcatgttgctttaaattcggcctataccccatcagctttatagcctgacaaattccccctgccgtgggacatgacnctctaggaatgagccttcctagcgacgcgggactaagctcctgaacataaaaggagccaaaacatttgagttcatctacgatgctttcttcgaaagatcttgatgaaaagggggaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 42 99.0 Weakly correlated
2 ZNF263 16 180.0 Weakly correlated
3 ZNF766 15 43.0 Weakly correlated
4 ZFP37 13 99.0 Weakly correlated
5 ZNF723 13 15.2 Weakly correlated
6 ZNF18 10 160.0 Weakly correlated
7 ZNF2 9 99.0 Weakly correlated
8 ZNF394 9 99.0 Weakly correlated
9 ZFP69B 8 99.0 Weakly correlated
10 ZNF101 8 43.0 Weakly correlated
11 ZNF679 8 28.9 Weakly correlated
12 ZNF324 7 99.0 Weakly correlated
13 ZNF197 7 99.0 Weakly correlated
14 ZKSCAN1 6 160.0 Weakly correlated
15 ZNF680 5 28.9 Weakly correlated
16 ZNF479 5 6.4 Weakly correlated
17 ZNF558 5 99.0 Weakly correlated
18 ZNF641 4 99.0 Weakly correlated
19 ZNF610 4 28.9 Weakly correlated
20 ZNF584 4 99.0 Weakly correlated
21 ZNF701 4 28.9 Weakly correlated
22 ZNF175 4 94.0 Weakly correlated
23 ZNF425 3 94.0 Weakly correlated
24 ZNF441 3 43.0 Weakly correlated
25 ZNF792 3 94.0 Weakly correlated
26 ZNF547 3 74.0 Highly correlated
27 ZNF597 3 94.0 Weakly correlated
28 ZNF589 3 28.9 Weakly correlated
29 ZNF682 2 28.9 Weakly correlated
30 ZNF695 2 28.9 Weakly correlated
31 ZNF705B 2 28.9 Weakly correlated
32 ZNF705D 2 28.9 Weakly correlated
33 ZNF84 2 99.0 Weakly correlated
34 ZNF92 2 28.9 Weakly correlated
35 ZNF554 2 99.0 Weakly correlated
36 ZNF429 2 28.9 Weakly correlated
37 ZNF317 2 99.0 Weakly correlated
38 ZNF274 2 99.0 Weakly correlated
39 ZKSCAN8 2 160.0 Weakly correlated
40 ZNF157 1 99.0 Weakly correlated
41 ZFP14 1 99.0 Weakly correlated
42 ZNF8 1 99.0 Weakly correlated
43 ZFP57 1 87.0 Weakly correlated
44 ZNF793 1 99.0 Weakly correlated
45 ZIM3 1 87.0 Weakly correlated
46 ZNF786 1 99.0 Weakly correlated
47 ZNF75D 1 94.0 Weakly correlated
48 ZNF124 1 43.0 Weakly correlated
49 ZNF133 1 99.0 Weakly correlated
50 ZNF585B 1 99.0 Weakly correlated
51 ZNF264 1 99.0 Weakly correlated
52 ZNF700 1 28.9 Weakly correlated
53 ZNF273 1 28.9 Weakly correlated
54 ZNF350 1 99.0 Weakly correlated
55 ZNF485 1 94.0 Weakly correlated
56 ZNF557 1 15.2 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 12 15.2 Weakly correlated
2 ZNF101 3 43.0 Weakly correlated
3 ZNF705B 2 28.9 Weakly correlated
4 ZNF679 2 28.9 Weakly correlated
5 ZNF2 2 99.0 Weakly correlated
6 ZNF705D 2 28.9 Weakly correlated
7 ZNF263 2 180.0 Weakly correlated
8 ZNF766 2 43.0 Weakly correlated
9 ZNF429 1 28.9 Weakly correlated
10 ZNF597 1 94.0 Weakly correlated
11 ZNF701 1 28.9 Weakly correlated
12 ZFP14 1 99.0 Weakly correlated
13 ZNF75D 1 94.0 Weakly correlated
14 ZNF324 1 99.0 Weakly correlated
15 ZNF793 1 99.0 Weakly correlated
16 ZNF157 1 99.0 Weakly correlated
17 ZNF479 1 6.4 Weakly correlated
18 ZIM3 1 87.0 Weakly correlated
19 ZNF680 1 28.9 Weakly correlated
20 ZFP57 1 87.0 Weakly correlated
21 ZNF554 1 99.0 Weakly correlated
22 ZNF641 1 99.0 Weakly correlated
23 ZFP37 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF723 15.2 Weakly correlated