ZRdb KZFP & Repeats
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LTR_ERV24B_PRIM

  • Name
    ERV24B_PRIM
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000114
Description :

Autonomous ERV with LTR24B LTRs. ORFs: (roughly) gag 894-2234, pol2235-5930, env 5962-6642.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttttggcgacccagatgggacccgaagcgagccttccgtcgatccccgccgcttcgccgacagccggggccctggtaccagcacgaacggctttcgttcacccgacctcgccggagccggcgggggtctctggcgaggctcctctcgggtttcgaatctccctggttttggctgagattcagactttattcaagcgacccgattccacgctcgacggagctggaattgaagctctactgctttaaggtaggagtttcgtttgttatttctctagagattctgctgtttgcaggtttgtggtttcacttttctttgaggttaaggttttgtttgtcttacttgctaaagttttgcaaccttttctctcgttcgaaatttggtcaaggagaaaacagtttctctttgaaaagaggaagtgaatntctgtggcttaagcaaaatttgtgatctttaaaactggccaggttctgaagctcggttcaattgacatatctaaantctcttcttgagtgaccaaaattanaaaaagctttctatgaggacgtgataagtcccgaagataagggacactgttcctcccggccgaaaggcaccttaggcgactaaggtctcgcgggagtgtcggagctcatcgctcgtgacgtgcaacggtcccatagggaatccccaaagaagaacatacagggaantttgcttaacccggtgggcacacataaggggctgatctcccagtgccttaagcgcccaggattcctgggtttcaccgagacacgtaagaggggagaagcgactcangggtgacacctcgaggagtnatncccattaagcagcacacttgacccaaaacatctttccctttcagtctttggtcacttaagaagagaacccaaattatgggcaatcgnccatctaaaaccgagtcttcctccttaaggagagatccacctttagaaacnccagctggntttatgtacaacacttatggngccncctcttgtaaatatctaggaaaatggnctcacntaacccgngaaganccnaaattacaatggccaaaatggggtacctttgaaatgcctaaantaatttatttgcgtgcncaattagaaaaagccggctctagaatnaaacaaaataantgggaganttacttccaatggtacttagaagcntccaaaagaggttctganaaagttgcttccttncaggaagnaaacaaaaagntgtctaaaacnatttctgaatttaaaaagactgctgaagcttctcctcctcctccctcagctcctccttctctttaccctttattgtctgaactaccttgcccngacctaccttctcttcctcctcctcctcctgctcctgctgttctggctccatttcncgaacagccagtgtctggtaggggagaacctgccttagtttatcaaccatggtcaaaggtagaacttaaaggcataattaaggaatttcctgatcctcaccaggaccctattggttttgccagggaatttgaattaaatattcgagcttatgaccctggcttttctgatttntatcaactagttcacatgttagtntcagaaagcaaggctaaagattggntagataaggcnnactggagaaatcccttagaggattttcataaatgttcagaagaagaccgcagacgtgcccgtgaaactgcaaaggctctgcntgaagccattccttnagtcttccaaaaggtagtngactggaanaaaatacaacaatgtcgacaaaatccagatgagtcngtgatgncatattttgaaagatttgaaaaaacntttaaacaatattcaggnttatctgaagaaagttatgctaatcatcaaaatgatactctcctnaattccaattttataaatgggttagatgaagaattagcactaataataaagagacaacgccctagttgggccacttctcanactcacgatttggtcaatcttgctgaccagttgtctcgtaccttaactaaagaagaaagagagagagaggccaaacaaaagaataaggctaataagattatgaatttacaactaaaacaactatcnacccagtctggacctccaaaataccccaataaacctcngaacggacctaaccctccgctttgcaattattgcaaaaaacctggncactttaaaaaggattgcagaaaactaaaacggagggaacaacaacaggcgaaggaaaaaggaaaatagggatgctccgaggaacttaaaggggcctttcctttcctccttactaacactctgggagaaatagaaattattttaaatggagaacaaacncaagccctcgttgacactggagctacnctntctgtnntnaaccccaccttattacaaggccccnttcctcggagtaannaaanaattcaaatggtgggngtcncnaatactcctgtaacggcatataaatctcagcctntnncttttcaactaggtcccttacaaggnactcatnttttccttttggttccntcagcccccatncatctnntaggaagagacttcttagaantntataatgcccacatttccttctcccaaaaggggaaaatgtatttagaattagatganaaaactgaattactagacataanaaatttttcaaaatctgatcctcaatttacaattgcaatccatattgccatagaagacactgaattattgagtaatgaagaattacaaaanctgctaaaggcagtacctgatcanttatggtcnaagtcttccactgatatnggaagaattatntcggctaccccnatnaaaattcaaatagacccatcnaaacctctnccnaatnttaaacaatatcccctaaaaccngaagcnntagaaggaatnaaaccnataattnaagattatataaaaaaaggactnatnattccctgcaccagcccttgtaatactccnatcctnccngtaaaaaaaccnaatggnngaggatggagatttgtncaagacctaagagccattaacaanatngtnattcctcgncatccngtagtnccaaacccncatacnttnttgnctnccatcccnnctgaaggcganttcttcactgtnatngatctatgtagtgcnttctttagcattcctgtngatnaagacagtcaatatctntttgccttcacttgggaagaccgacaatacacctggacagtcatgcctcagggntatactgaaagcccnncttacttttcncaaatattaaaagcagacctnncagacgttgacttccctaagaaatctactctnatncaatatgtagatgatttnctnctntgctcagaggataagcaagcctctatagaagacggnattcacttgttacaacaattagcnnnaaagggacacaaggtttcnaaagaaaaactncaattttgtcaaaaacaagtnaaatatttgggacatttaatntcnaaggaaggacttcttatnaatccaganagactaaaaggaatnttagctttccccaccccganaaccaagagacaactnagagggtttctgggactngcaggatactgtngaaactggatnccnaatttttctttaatggctcagcccttatatgctctcttaaaacaagacangccagaccctctagantggacagaagaaaatcaactaacattagaaatgatnaaaaatgaccttacnaatgccccagctttgggncatccnaattataancttccattttcnttntttgtncatgaaagnaanggaaacgctttaggggtcctnacccaaaaacatggaggccaanatagacccgtnggatattatagccagcaattagacccngtngctaaaggactnccaccttgcntgagagcnatancagccgctgccntgttagtnaaggcaaccgaagaaatngtnatggganctcccctnactgtttncgtncctcattctgtggaagcnctnctaaactcncaccacactcaacatttttcngttagcagactagcttcttatgaagttttncttctttcngctcctcatatcaccatctctagntgtaacaatctnaaccctgcnactcttctgcctccaccttcagatgagacgccgcacgactgcgtaaccctaactgatcaacttctnnctcctaggacagatctacaagagactcccctnannaacgctgatgttgtttggtttacagatggatcntatttaaaggatgaatctggaanntaccgngcaggntacgctatagtgtctttaactgaagnaatagaaagcgcttaccttccagaagccacntcggcccaacaagcagaattnatngcnttnaccagagcttgtcanttggcnaaaggaanaactgctaatatttatacagacagcagatatgcttttggagtagcccatgattttggaatgctatggaaacaaagaggntttctnacctcttctggncaacccatnaaaaatggacaccntatttcacaattnctagaagccatnttattaccaaaatcgctggccattattaaaattccaggncattccaaatcagatactccagaaagcagaggaaatcanctagctgataaggtagcaaaaagngctgctctaaacgcatctaaacaagaaaancaacctatattaacttttaaagaagcacctgaatttgacataaaattagctcaatccagagctccaaaatcagaacagaaaagttggaaaacaaaagggggaanatattcccccaaagatgaggtatggtatgggccaaacgactcgcctatncttcctgctgaattncagttatcatttttaacctatgtacatgatctaactcactggagccctgacaaaatgattgcttggggaaaacaatattgttggaaaccttctccgactatagctcataaggtntacaatcgntgtcnnatttgtccaaaatataatccaggaaaaccnttacacggttcccaaggacattttcctttacccganggnccntttgaagtacggcaantggattttatccagctgccaccntcacaaggntacaaatatgttctggtnatgatttgcatgttttctcattgggtagaagcntttccatgcagaagagcnacggccttagcagtaagtaaaattctnttagaaaanattattccnncntggggaattcctctggaacttcatagcgacagaggnactcattttactggacagatnattcaatcagtatgtaaaatctggccnattctccaacatttccattgtgcctatcacccccagtcntctggattggtngaacgnacaaacggaataatnaaaactcaattggcaaaattaaccgaggcttttaaanttccttggccaaaagctcttccattggttttgcttaacctaagatcnacccctttcggnaaacaccagttatcnccntttgaaataatnacaggcagacctatgaaattgtctccaggaaactgtgcctccttaatantaaaaggagacatactcnactattgtaanggccttatnaaacaattaactaaaaattataanttggtaaaagaatcttttcacagtgagctcccgggagacgaagacctcaagnaccacggncttcagccnggngatttcgtctactggaaangacatctnttaaaggactctctccaaccncgntggaanggnccttatcaggtgctnttnactaatccttgtgctgctaagttanagggcnttgactcctggatncacgtntctcatctaaagaaggctgagcctcctgaatggactgtttcaccggaaggtgatctccgacttaagataagtcgacgccaggccgagaagaagatgacatctgangtagacngctttcccaagacaccggaccaggcctgtatctaaatgaatgcttaatactaacaatcgttaatagatggggaagattttcctttacaagctcccactaaacttctttctttttatccttagttctcatgtcttggtactactatcaccagctgttgcccatgaagcaaacctctttttgcaatgggcccaggactatgctaatagattacaaaaagacgcttgctgggtatgtggcctcatgcccctttccagtggttctggcctaccatggtgggtatctcctctccaaggacaagactggatagaatatcagaaatatatccgtntttctcaagaacagtcatcggtacttaacactagtatgactaaggataatgtacatcactggcctattagtaatactttacaaaataaggggcataggaagagcttctcggtaaaagaaactagttcactagctttaacnctggcgctgccccagctgagagacgagacaataacgctgccccaatcgaaagataagacaactcaatttcaggatggtataacacaaatttgggacggntttatctggcttaccccctcctttggccagcttagtcagcntgtccctttatgttgggaacagaaaaatcacaccaaagatanctggcccaactgcactagagatatgggatggatacccaaagaacggtgtatccgcaccattatattacaaagtactgattggcatgccactgaataggcacaataaccgagtatttattggttagctccaaatagaacgtcttggctatgtggcactaatctatggccatggttacccccaggatggttaggacgatgttctttgggttatgcttgggcacaaggtcgaatagttcataccctgtcaaaacccgcaaattttcctcatttacaatctcgttgggttcgttctgtgttccattggtatgatcatttagcttccatctttntaccacaactgggtattgaagatgtcatttggcatgtagaggccctaaccaattatacacaaaaggccctaaatgatagccgcatgggtatctcgttattaaataatgaagttactctcatgagaaaggctgtattacagaaccgtatggctttagacatactcactgcagcccaagggggaacctgcgctatcataaaaactgaatgctgtgtctatatcccagatgaatcaaataacatcactaaattaatggctgatatgaaaacccaaataaccaacctttcagatccaaaaccctctctaagcgactggctaagtagctggtttggatcttggggaacttggtgacaaaaactgttacttattctaggaattataatcatttgttgtgttttgtcctgtttttgtctacactgctgttacggcatttgtttgcaatngagtcaacgtacaactgaaaaggctagagtgatgnttgcccaaagaattgctttaattgaagangcagtcgtgtagcctgaatcaggttccaggattacttcccttntgttgctttgtaattcggccttggtccntccgttttntgacttgtccaatcccccctcccatgggacatgacttcctaggaatgagccttcctagtgacgtgggattagactcntgaacataaaaggagtcaaaactantgagttcntctacgatgctttctccgaaagatcttgaagaaaagggggaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 30 99.0 Weakly correlated
2 ZNF723 23 15.2 Weakly correlated
3 ZNF766 19 43.0 Weakly correlated
4 ZNF101 12 43.0 Weakly correlated
5 ZNF394 11 99.0 Weakly correlated
6 ZFP37 11 99.0 Weakly correlated
7 ZNF2 11 99.0 Weakly correlated
8 ZFP69B 10 99.0 Weakly correlated
9 ZNF197 7 99.0 Weakly correlated
10 ZNF175 6 94.0 Weakly correlated
11 ZNF589 6 28.9 Weakly correlated
12 ZNF679 6 28.9 Weakly correlated
13 ZNF584 5 99.0 Weakly correlated
14 ZIM3 5 87.0 Weakly correlated
15 ZNF324 5 99.0 Weakly correlated
16 ZNF157 4 99.0 Weakly correlated
17 ZNF263 4 180.0 Weakly correlated
18 ZNF75D 4 94.0 Weakly correlated
19 ZKSCAN8 4 160.0 Weakly correlated
20 ZNF610 3 28.9 Weakly correlated
21 ZNF479 3 6.4 Weakly correlated
22 ZNF320 3 28.9 Weakly correlated
23 ZNF317 3 99.0 Weakly correlated
24 ZNF18 3 160.0 Weakly correlated
25 ZNF8 2 99.0 Weakly correlated
26 ZNF793 2 99.0 Weakly correlated
27 ZNF701 2 28.9 Weakly correlated
28 ZNF695 2 28.9 Weakly correlated
29 ZNF554 2 99.0 Weakly correlated
30 ZNF680 2 28.9 Weakly correlated
31 ZNF257 2 0.0 Weakly correlated
32 ZNF792 2 94.0 Weakly correlated
33 ZNF597 2 94.0 Weakly correlated
34 ZNF92 1 28.9 Weakly correlated
35 ZNF780A 1 43.0 Weakly correlated
36 ZNF605 1 99.0 Weakly correlated
37 ZNF585A 1 99.0 Weakly correlated
38 ZNF558 1 99.0 Weakly correlated
39 ZNF549 1 87.0 Weakly correlated
40 ZNF534 1 19.6 Weakly correlated
41 ZNF490 1 43.0 Weakly correlated
42 ZNF486 1 8.6 Weakly correlated
43 ZNF28 1 28.9 Weakly correlated
44 ZNF251 1 94.0 Weakly correlated
45 ZNF230 1 28.9 Weakly correlated
46 ZNF133 1 99.0 Weakly correlated
47 ZKSCAN5 1 160.0 Weakly correlated
48 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 21 15.2 Weakly correlated
2 ZNF157 4 99.0 Weakly correlated
3 ZNF2 3 99.0 Weakly correlated
4 ZFP69B 2 99.0 Weakly correlated
5 ZNF75D 2 94.0 Weakly correlated
6 ZNF766 2 43.0 Weakly correlated
7 ZNF382 2 99.0 Weakly correlated
8 ZNF101 2 43.0 Weakly correlated
9 ZNF479 1 6.4 Weakly correlated
10 ZNF793 1 99.0 Weakly correlated
11 ZNF680 1 28.9 Weakly correlated
12 ZIM3 1 87.0 Weakly correlated
13 ZNF610 1 28.9 Weakly correlated
14 ZFP37 1 99.0 Weakly correlated
15 ZNF490 1 43.0 Weakly correlated
16 ZNF28 1 28.9 Weakly correlated
17 ZNF263 1 180.0 Weakly correlated
18 ZNF317 1 99.0 Weakly correlated
19 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF723 15.2 Weakly correlated