ZRdb KZFP & Repeats
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LINE_CR1_MAM

  • Name
    CR1_MAM
  • Repbase
    CR1_Mam
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000110
Description :

Mammalian remnant of an ancient LINE element first identified as CR1(Chicken Repeat 1). The vast majority of CR1_Mam corresponds to roughly2/3rds of ORF2 from CR1.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tagattggcaaaatacctcatcgggacgaaatatagaagagangcttttcgataagacaaatnaccgcttcctagaataggtagttttagaacccacaaggaaaggaaatanactggacttggttctgagnagtgaacaggaactggcgcaggaagtatctgtgggtgaaccactatgtgaccaataacgattaaattcaacattctggcgggaaaggaaaaccaaaaaaaatccatcacatgttactcaattttagaaaagggaactatgacaaaatgtgggcattagttaggaaaaatgaaaagnanagtttaaaaagtaaataacccacaggaagcctggagactatttnaaaacaccttattggaagcccaggaaaaatgtgtgccanggatcaaaaanaccaggcgcttggaaaaaaaaatacccngcatggctaactggcaaagtcaaagaggctattgtaggggaaaaggcatctttcaaaaaatggaaaganaantccaagtgaggagaacagggaagcccgcaaagtatggcaggtcaggtacaaactagaaattaggcgggccaaaaaagaatttgaggagcaccttgcaagggactccaaagccaataataaaaggttctttaaatacatcaaaggnaggaagccagctagagaatcagtgggaccatttgatgatcacggtgcaaaaggtgnactcaagatgaaaaaggagatagcagagagactnaatgaattctttgcttcggtctttactgaggaagacgttagggagattcccactcccaaattgtcttttgaagcagacaggtcagaggtactagatcaaatagtggtaaacgcacaggatgttctagacctaattgacaaactagatgtagataaatcaccggaccagatggcatccacccaagagttttgaaggaactcaagggtgaaactgttgacaaaatgtgtaacctgtattacaaacggccactgtgccnagaacnagtgtgttcaatgggctccatccataagaagggctccagaggccatggaactaaagccagtgagtctcacttccataccnggcaagctggtggnatataagcaaagagtagnactnancgcgcanncaaacataacctactaggagaaaggcaacatggtttctgtaaggggaaatcatgcctgactaatctattagagttctttgagggggtaaataacatgtggacaaggagaaaccagtggatataatttatttagactttcaaaaagcctttgacaaggttccacaccaaaactttatttttaaaaattgagtcaccatgggattngggggaatgttttgtcatggatagggaactggcttagagacaggaaacaaaaggtagagaataaacgggcacttctctggatggagaagtgtaaacagtggggtcccccagggatcagtgctgggactagtcttatttaacatttttataaatgatctggaagagggagtgcacagtgaaatctccaagtttgcagatgacactaagctcttccgggtagtgaaatgccaagccgatggggataaactgcaggaagatctcacgaggctgtgtgagtgggcagaaaagtggcagatgagcttcagtgtgggcaagtgtaaggtaatgcatttagggaaaaataatccaaactatacttataagatgatgggctctgagctatcagttacgacccaggaaagggatctaggagtcattgtagactgttccctgaagacatcagcccaatgtgctgtagccaaaaaggccaacaaaatgctgggcatcatcaggaagggtattggaaacaaaacagaaaacattatcctacctttgtacaaaaccatggtgtatccgcacctggaatactgtgtgcagttctggtcgccgcatccctcaagaaagacataacagagctgagaagggtaattaaaatgatcaaggggatggaaggctttnataagaggctgagctgntttgtttaaaactttagtctggaaagacgaaggctgagaggggatatgatcaaagtctataaaatcatgaagggtatggataaggtgaacacggacttgttcaccaaatcccagaatactagaactagggcancctttgaagcttgaaagaaattttagggacaaataaaagaaaaggcgtanactcattctacagaggg
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 63 99.0 Highly correlated
2 ZNF394 23 99.0 Highly correlated
3 ZNF766 20 43.0 Weakly correlated
4 ZFP37 19 99.0 Highly correlated
5 ZNF263 19 180.0 Weakly correlated
6 ZNF317 15 99.0 Highly correlated
7 ZFP69B 13 99.0 Highly correlated
8 ZNF2 13 99.0 Highly correlated
9 ZNF18 12 160.0 Weakly correlated
10 ZNF101 10 43.0 Weakly correlated
11 ZNF324 10 99.0 Highly correlated
12 ZKSCAN1 10 160.0 Weakly correlated
13 ZIM3 10 87.0 Moderately correlated
14 ZNF680 9 28.9 Weakly correlated
15 ZNF589 9 28.9 Weakly correlated
16 ZNF479 8 6.4 Weakly correlated
17 ZNF723 8 15.2 Weakly correlated
18 ZNF554 6 99.0 Highly correlated
19 ZNF793 6 99.0 Highly correlated
20 ZNF610 6 28.9 Weakly correlated
21 ZNF558 5 99.0 Highly correlated
22 ZNF597 5 94.0 Moderately correlated
23 ZNF175 5 94.0 Moderately correlated
24 ZNF534 4 19.6 Weakly correlated
25 ZNF486 4 8.6 Weakly correlated
26 ZNF701 4 28.9 Weakly correlated
27 ZNF30 3 94.0 Moderately correlated
28 ZNF679 3 28.9 Weakly correlated
29 ZNF584 3 99.0 Highly correlated
30 ZNF682 3 28.9 Weakly correlated
31 ZNF182 3 99.0 Highly correlated
32 ZKSCAN8 3 160.0 Weakly correlated
33 ZNF197 2 99.0 Highly correlated
34 ZNF8 2 99.0 Highly correlated
35 ZNF75D 2 94.0 Moderately correlated
36 ZNF585B 2 99.0 Highly correlated
37 ZNF485 2 94.0 Moderately correlated
38 ZNF792 2 94.0 Moderately correlated
39 ZNF251 2 94.0 Moderately correlated
40 ZNF528 2 43.0 Weakly correlated
41 ZNF331 2 94.0 Moderately correlated
42 ZNF778 2 74.0 Weakly correlated
43 ZNF320 2 28.9 Weakly correlated
44 ZNF613 1 99.0 Highly correlated
45 ZNF92 1 28.9 Weakly correlated
46 ZNF641 1 99.0 Highly correlated
47 ZNF675 1 8.6 Weakly correlated
48 ZNF84 1 99.0 Highly correlated
49 ZNF816 1 28.9 Weakly correlated
50 ZNF695 1 28.9 Weakly correlated
51 ZNF705B 1 28.9 Weakly correlated
52 ZNF735 1 28.9 Weakly correlated
53 ZNF761 1 19.6 Weakly correlated
54 ZNF440 1 28.9 Weakly correlated
55 ZKSCAN5 1 160.0 Weakly correlated
56 ZNF133 1 99.0 Highly correlated
57 ZNF140 1 99.0 Highly correlated
58 ZNF141 1 43.0 Weakly correlated
59 ZNF157 1 99.0 Highly correlated
60 ZNF214 1 99.0 Highly correlated
61 ZNF26 1 99.0 Highly correlated
62 ZNF287 1 99.0 Highly correlated
63 ZNF28 1 28.9 Weakly correlated
64 ZNF425 1 94.0 Moderately correlated
65 ZNF429 1 28.9 Weakly correlated
66 ZNF596 1 94.0 Moderately correlated
67 ZNF441 1 43.0 Weakly correlated
68 ZNF468 1 28.9 Weakly correlated
69 ZNF483 1 99.0 Highly correlated
70 ZNF490 1 43.0 Weakly correlated
71 ZNF549 1 87.0 Moderately correlated
72 ZNF559 1 74.0 Weakly correlated
73 ZNF562 1 28.9 Weakly correlated
74 ZNF583 1 99.0 Highly correlated
75 ZNF585A 1 99.0 Highly correlated
76 ZNF586 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 6 87.0 Moderately correlated
2 ZNF766 5 43.0 Weakly correlated
3 ZNF723 4 15.2 Weakly correlated
4 ZNF554 3 99.0 Highly correlated
5 ZNF680 3 28.9 Weakly correlated
6 ZNF2 2 99.0 Highly correlated
7 ZNF263 2 180.0 Weakly correlated
8 ZNF18 2 160.0 Weakly correlated
9 ZNF479 2 6.4 Weakly correlated
10 ZNF585A 1 99.0 Highly correlated
11 ZNF175 1 94.0 Moderately correlated
12 ZNF675 1 8.6 Weakly correlated
13 ZNF735 1 28.9 Weakly correlated
14 ZNF483 1 99.0 Highly correlated
15 ZFP37 1 99.0 Highly correlated
16 ZNF382 1 99.0 Highly correlated
17 ZNF440 1 28.9 Weakly correlated
18 ZNF490 1 43.0 Weakly correlated
19 ZNF793 1 99.0 Highly correlated
20 ZNF317 1 99.0 Highly correlated
21 ZNF26 1 99.0 Highly correlated
22 ZNF101 1 43.0 Weakly correlated
23 ZKSCAN1 1 160.0 Weakly correlated
24 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats