ZRdb KZFP & Repeats
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LINE_CR1-3_CROC

  • Name
    CR1-3_CROC
  • Repbase
    CR1-3_Croc
  • Type
    LINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0001325
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gggatccatctgacgagaacggggaagagcatctttgggcgtcgtctggccaacctagtaaggagggctttaaactaggttccacggggatggtgatcaaaaccctccagcaacagagcacacagtccagaggggaaaggactcgaagaagcaactcaactctgggaaagggccagagagctacaggactgcaacaagtggccaaaaggaagcgagtaggtcaaaatgcaaaatacgtccgatgcatgtatacaaatgcgagaagtatggggaataaacaagatgagctggaagctgcagcctgtgaaaagaactatgatctgattggcatcacagagacctggtgggacagctcttatgactggaatgtcaacatcgagggttacactctgtttcggaaggacagggttgggagaaaaggtggtggtgttgccttgtatgtcaaaaacacatacacttgttccctggttcaggaggaagaagacagcaaagcagaatgcatttgggtgaagatgaaaggtgaaagatgcagcaccgatataatggtggggatttattataggccaccaaatcaggaagaggaggtggatgaggcactcttcaagcaggtgacaaatctatccaaaagctatgggatggtactgatgggagacttcaattttccggacatctgctggaagaacaatgcagccaaacataaaatgtcaagccggttcctaacttgtgtggaggacaactttctgttccagaaagtggaggatacaactaggggatcatctatcttggatcttgtcctgaccaacagggaagaactggtggaggatgtgaaggtgatgggtaacttgggaggaagcgatcacgatatgatagaattccagatcctgagacggggaaagcatgaggtcagcaaaattaggacgctagatttcaaaaaggcggatttcatccgactcaaggagttaataggcatggtgccatgggaggacagactgaaggataaaggcgcccaggagggctgggagcttctaaagggcacagtattggaagcccaacaagaaactgtcccgacacgatggaagcacaagaagaatggcaagagaccaatgtggctgcacaaggagcttctaaaatgcctcaaatgcaaaaggaaagcatacaggcaatggaagaatgggcaggtcaccaaggaagcgtaccaggaaatagcaagaacctgcagggacaaaatcaggaaggcaaagataaagaacgagctgcacctggcgaaggaggttaaggacaacaagaagaggttctataagtatgttggccagaaaagaaggaccaaggaagctgtgggtccnctgttaacaagccagggggaactcctaacngaagatgcaaagaaggcggagctactcaacagctactttgcctcagtcttcacaaaaaaattaagctgcagccagacacctaataaggattatctggataaggaagggggcaagctgagggangagataacaaaagagacggtcagagagcttttgntgggtctgaatgaattcaagtcagcagggccggatgaacttcatcccagggtactgaaggaactggcagaggagatctcggagcccttggcaatgatcttcatgaagtcgtgggagacgggccaggtaccagaggactggaaaagggccaacgtagtgcccctctttaaaaaaggcaaaaaggaggacccggggaactacagaccggttagcctcacctcaatacctgggaagttactggagcatatcctaaggaaggccatttgcaagcatctggaggaggaaaggctgatcacaagcagccagcatggatttacgaaaaacaaatcgtgtcaaacaaacttgatctccttctttgacaaagtaactacttgggtggatgaagggaatgctgtggatatagtgtatctggacttcagcaaggcttttgacaaggtcccgcatgaccttctcataaacaaattggagaaatgtgggctggacaaaactactacaaggtggatagataactggctcaatagccgcaagcaaagggtaattattaacgggtccatgtcagaatggcaggaggtttcgagtggagtcccacaggggtctgtcctgggcccggtgctgttcaacgtgtttattaatgatttggatgctggcatagaaagcttcttgagcaagtttgcagacgacacgaaactgggaaggattgcgaacacgttggaggacgngagcgcaattcagaaggatctcgacagattggaaagctgggctagagctaacaggatgaagttcaatgcggacaaatgcaaggtgctacacctcgggaggaataatcaaaaacacaaatacaaaatgggtgacacctggctggatggcagcactatggaaaaggacctgggagtcttggtagatcacagactcaatatgagtctgcagtgtgatgcagccgcacaaaaggcgaatgcggttttgggatgcatcaatagaagcattaggtgcaagacacgggaggtgatagtgcctctctactcggcactggttaggcctcatctggagtactgtgtgcagttctgggctccacattttaaaaaggacgtggagaagttagagagggtccagaggcgggcaacaaagatgataaagggcttggaaggcaagtcatacgaggagaggctgaaggagctaggcatgttcagcttgcggaaaaggcgcttaagaggggacatgatagcagtcttcaaatacttgaagggctgccataaagaagagggaaagcaccttttctctcttgctgcagagaggaggacgcggaccaatggcttgaagttgcagcaaagtaggtttagattggatatccggaaaaacttcttcactgttagaacagtgaggcagtggaatagactgcctagggaagttgtggactctccatcactggaggtgttcaagaagaggttggacagccactggtcggggatgatctaggcgtagctatgcctatgttctactatgggtatttcccatgcttctgggctttgctggttgcccccgcctccccccccccccctttctgctacatgtgtcagggtgtttttaagccttcctcagaggcattgggtgttggctgcagccaaggctggggactttgactggggtgtgccaatgctcctgctgggaccaaagccggaggttcctggctagagggtcttgcccctccgctcagggtcagaccgatcgccatatttggggtcaggaaggaattttaccccatggtcagattggtacggactgtgggggtttttgccttcctctgtagcggggggcgtggccctctacccgggatctcttgagcatatattgacaacatttcatagaagcaggacattggctgccgtggttcccctgctttacctgtggcaggttagggtgttaggtctgtgttgtgtcagggttgacggtagtcttacgtagagtttagattatggttgtatgggatggtttggatagggatgatcctgcctcaggcagggggttggactagatgacctctggaggtcccttccagccctacttctctatgattctatg
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 62 99.0 Weakly correlated
2 ZNF766 34 43.0 Weakly correlated
3 ZNF92 24 28.9 Weakly correlated
4 ZFP37 22 99.0 Weakly correlated
5 ZNF394 19 99.0 Weakly correlated
6 ZNF589 16 28.9 Weakly correlated
7 ZNF175 16 94.0 Weakly correlated
8 ZNF286A 16 160.0 Weakly correlated
9 ZKSCAN8 14 160.0 Weakly correlated
10 ZNF197 14 99.0 Weakly correlated
11 ZNF2 14 99.0 Weakly correlated
12 ZNF263 14 180.0 Weakly correlated
13 ZNF584 13 99.0 Weakly correlated
14 ZNF317 11 99.0 Weakly correlated
15 ZFP69B 9 99.0 Weakly correlated
16 ZKSCAN1 9 160.0 Weakly correlated
17 ZNF101 9 43.0 Weakly correlated
18 ZNF680 8 28.9 Weakly correlated
19 ZIM3 6 87.0 Weakly correlated
20 ZNF701 6 28.9 Weakly correlated
21 ZNF558 6 99.0 Weakly correlated
22 ZNF705D 5 28.9 Weakly correlated
23 ZNF597 5 94.0 Weakly correlated
24 ZNF324 5 99.0 Weakly correlated
25 ZNF479 5 6.4 Weakly correlated
26 ZNF554 4 99.0 Weakly correlated
27 ZNF18 4 160.0 Weakly correlated
28 ZNF534 3 19.6 Weakly correlated
29 ZNF610 3 28.9 Weakly correlated
30 ZNF257 3 0.0 Weakly correlated
31 ZNF723 3 15.2 Weakly correlated
32 ZNF679 2 28.9 Weakly correlated
33 ZNF707 2 74.0 Weakly correlated
34 ZNF547 2 74.0 Weakly correlated
35 ZNF248 1 99.0 Weakly correlated
36 ZNF251 1 94.0 Weakly correlated
37 ZNF641 1 99.0 Weakly correlated
38 ZNF792 1 94.0 Weakly correlated
39 ZNF202 1 160.0 Weakly correlated
40 ZNF28 1 28.9 Weakly correlated
41 ZNF705B 1 28.9 Weakly correlated
42 ZNF274 1 99.0 Weakly correlated
43 ZNF736 1 43.0 Weakly correlated
44 ZNF585B 1 99.0 Weakly correlated
45 ZNF716 1 19.6 Weakly correlated
46 ZNF75A 1 94.0 Weakly correlated
47 ZNF730 1 19.6 Weakly correlated
48 ZNF735 1 28.9 Weakly correlated
49 ZNF490 1 43.0 Weakly correlated
50 ZNF417 1 28.9 Weakly correlated
51 ZNF429 1 28.9 Weakly correlated
52 ZNF441 1 43.0 Weakly correlated
53 ZNF45 1 99.0 Weakly correlated
54 ZNF471 1 94.0 Weakly correlated
55 ZNF182 1 99.0 Weakly correlated
56 ZNF483 1 99.0 Weakly correlated
57 ZNF485 1 94.0 Weakly correlated
58 ZNF304 1 99.0 Weakly correlated
59 ZNF528 1 43.0 Weakly correlated
60 ZNF549 1 87.0 Weakly correlated
61 ZNF331 1 94.0 Weakly correlated
62 ZNF563 1 28.9 Weakly correlated
63 ZNF573 1 94.0 Weakly correlated
64 ZNF12 1 99.0 Weakly correlated
65 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 2 28.9 Weakly correlated
2 ZNF263 2 180.0 Weakly correlated
3 ZNF584 2 99.0 Weakly correlated
4 ZNF534 2 19.6 Weakly correlated
5 ZNF317 2 99.0 Weakly correlated
6 ZNF92 2 28.9 Weakly correlated
7 ZNF197 2 99.0 Weakly correlated
8 ZNF589 2 28.9 Weakly correlated
9 ZFP37 2 99.0 Weakly correlated
10 ZNF175 2 94.0 Weakly correlated
11 ZNF479 2 6.4 Weakly correlated
12 ZNF597 1 94.0 Weakly correlated
13 ZNF766 1 43.0 Weakly correlated
14 ZNF549 1 87.0 Weakly correlated
15 ZNF723 1 15.2 Weakly correlated
16 ZNF641 1 99.0 Weakly correlated
17 ZNF417 1 28.9 Weakly correlated
18 ZKSCAN8 1 160.0 Weakly correlated
19 ZNF701 1 28.9 Weakly correlated
20 ZNF558 1 99.0 Weakly correlated
21 ZNF101 1 43.0 Weakly correlated
22 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats