ZRdb KZFP & Repeats
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LINE_CR1-16_AMI

  • Name
    CR1-16_AMI
  • Repbase
    X18_LINE
  • Type
    LINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0001265
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aacttattgtaacatggagcattattttgaaaagtcacgaaaantgggnaggtaccggaagattggagaaaagcaaacgcgctgatgtcttcaaaaaaggaaggagagtgatcctggcaattaccatcctcaagtcttaacttctatccctagtaaaataatggaacaaatattaagagggaggaaaaaatcactaaacatctagaggataacggaaccatgagcaataagcagcatgggtttataaagaacaaatcttgccagacaaacttgattgctttttttgatagaattacaaaattagtggatgaagggatgcaatatatttggattttagtaaagcatttgatacagtgtctcacatatcttaaaattaattcaaattggcttggatatgagcactgtcacgtggactgaaaactggctgaaggaccgtaaacaaagggtaatgataaacggcaatgtatcgagttggggggaggtgtctaggggtactgcagggatggtgttaggtctggtcttatttaacatcttcattaatgatctggaagagggagtaaacagcacgttaatgaaattcgcagatgatactaaattgggaggagttgcaaacaccagtgaggacagagaaataatacaaagggacctagagagattagaaaggaaataacaaaatgagattaacttggaaaaatgcagctaatattcactggggaaaatccaatggaagaggaaacntggaaagcagtaatganagagacctngaggcgatagcggacagcaaattagatatgagttgcaatgtgatatggcagcaaaaggccagtgcaattttgggctgcatatgcgga
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 27 99.0 Weakly correlated
2 ZNF18 10 160.0 Weakly correlated
3 ZFP37 9 99.0 Weakly correlated
4 ZNF394 9 99.0 Weakly correlated
5 ZFP69B 6 99.0 Weakly correlated
6 ZNF263 6 180.0 Weakly correlated
7 ZNF324 6 99.0 Weakly correlated
8 ZNF101 4 43.0 Weakly correlated
9 ZNF610 4 28.9 Weakly correlated
10 ZNF317 4 99.0 Weakly correlated
11 ZNF175 3 94.0 Weakly correlated
12 ZNF554 2 99.0 Weakly correlated
13 ZNF534 2 19.6 Weakly correlated
14 ZNF589 2 28.9 Weakly correlated
15 ZNF485 2 94.0 Weakly correlated
16 ZNF680 2 28.9 Weakly correlated
17 ZNF558 2 99.0 Weakly correlated
18 ZNF723 2 15.2 Weakly correlated
19 ZNF257 2 0.0 Weakly correlated
20 ZNF251 2 94.0 Weakly correlated
21 ZNF75D 2 94.0 Weakly correlated
22 ZNF786 2 99.0 Weakly correlated
23 ZNF701 1 28.9 Weakly correlated
24 ZNF766 1 43.0 Weakly correlated
25 ZNF84 1 99.0 Weakly correlated
26 ZNF597 1 94.0 Weakly correlated
27 ZNF429 1 28.9 Weakly correlated
28 ZNF596 1 94.0 Weakly correlated
29 ZNF585A 1 99.0 Weakly correlated
30 ZNF519 1 19.6 Weakly correlated
31 ZNF441 1 43.0 Weakly correlated
32 ZNF347 1 43.0 Weakly correlated
33 ZNF2 1 99.0 Weakly correlated
34 ZNF12 1 99.0 Weakly correlated
35 ZKSCAN5 1 160.0 Weakly correlated
36 ZKSCAN1 1 160.0 Weakly correlated
37 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZFP37 2 99.0 Weakly correlated
2 ZFP57 1 87.0 Weakly correlated
3 ZKSCAN5 1 160.0 Weakly correlated
4 ZNF534 1 19.6 Weakly correlated
5 ZNF680 1 28.9 Weakly correlated
6 ZNF429 1 28.9 Weakly correlated
7 ZNF251 1 94.0 Weakly correlated
8 ZNF382 1 99.0 Weakly correlated
9 ZNF75D 1 94.0 Weakly correlated
10 ZNF263 1 180.0 Weakly correlated
11 ZNF596 1 94.0 Weakly correlated
12 ZNF766 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats