ZRdb KZFP & Repeats
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SINE_AMNSINE2

  • Name
    AMNSINE2
  • Repbase
    UCON3
  • Type
    SINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0000068
Description :

The copy number ranges from ~100 in the human genome to ~178 in thechicken genome. 45% of human copies are in highly conserved regions.Shows distant similarity to Leu tRNA. Tentatively classified as SINEelement. Inverted from UCON3 original. Reference coords 1-78:tRNA-Leu-TTG, 137-264:Deu core, remainder must match an as yet unknown LINE.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gccggaggggatggcttagtggtctaagcatcaggtttgaaatacctagactccctggaaccacaggttcaaatcccagcagggtcgactcagcccttcatccttccgaggtagataaattgagtnccacgcagtttactgtgtgngggtctttcggatgagaccttaaaaaccaaagccctgtctgctctgcgtggacattaaagatcccgtggcgcttttcgtaagagtaggggtttgccccggtgcccttggccgaatttctggaacccggctgaaancccggggaaaccgagagcctggcttatccctatagggtattagncaccctataaaagttaaatttatttatttattt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 33 99.0 Weakly correlated
2 ZNF394 19 99.0 Weakly correlated
3 ZNF766 17 43.0 Weakly correlated
4 ZNF263 16 180.0 Weakly correlated
5 ZNF2 15 99.0 Weakly correlated
6 ZFP37 13 99.0 Weakly correlated
7 ZNF175 11 94.0 Weakly correlated
8 ZNF589 10 28.9 Weakly correlated
9 ZNF584 8 99.0 Weakly correlated
10 ZKSCAN1 8 160.0 Weakly correlated
11 ZNF101 6 43.0 Weakly correlated
12 ZNF701 6 28.9 Weakly correlated
13 ZKSCAN8 5 160.0 Weakly correlated
14 ZNF317 5 99.0 Weakly correlated
15 ZNF554 4 99.0 Weakly correlated
16 ZNF680 3 28.9 Weakly correlated
17 ZNF597 3 94.0 Weakly correlated
18 ZFP69B 3 99.0 Weakly correlated
19 ZNF558 3 99.0 Weakly correlated
20 ZNF534 3 19.6 Weakly correlated
21 ZNF479 3 6.4 Weakly correlated
22 ZNF274 3 99.0 Weakly correlated
23 ZNF197 3 99.0 Weakly correlated
24 ZNF528 2 43.0 Weakly correlated
25 ZNF549 2 87.0 Weakly correlated
26 ZNF324 2 99.0 Weakly correlated
27 ZNF18 2 160.0 Weakly correlated
28 ZNF610 2 28.9 Weakly correlated
29 ZIM3 2 87.0 Weakly correlated
30 ZNF92 1 28.9 Weakly correlated
31 ZNF468 1 28.9 Weakly correlated
32 ZNF816 1 28.9 Weakly correlated
33 ZNF780A 1 43.0 Weakly correlated
34 ZNF723 1 15.2 Weakly correlated
35 ZNF705D 1 28.9 Weakly correlated
36 ZNF705B 1 28.9 Weakly correlated
37 ZKSCAN3 1 99.0 Weakly correlated
38 ZNF140 1 99.0 Weakly correlated
39 ZNF679 1 28.9 Weakly correlated
40 ZNF674 1 99.0 Weakly correlated
41 ZNF202 1 160.0 Weakly correlated
42 ZNF350 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 3 6.4 Weakly correlated
2 ZNF597 1 94.0 Weakly correlated
3 ZNF263 1 180.0 Weakly correlated
4 ZNF2 1 99.0 Weakly correlated
5 ZNF766 1 43.0 Weakly correlated
6 ZNF554 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats