ZRdb KZFP & Repeats
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SINE_AMNSINE1

  • Name
    AMNSINE1
  • Repbase
    AmnSINE1_GG
  • Type
    SINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0000067
Description :

Derived from both chicken and human sequence. Reference coords 1-114:5S-RNA, 168-328: Deu-core, 508-575: LINE2-like tail.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gcctgcagccataccacctcgggctgtgatctcgtcagatctcacaagctaagcagggtcgggcctggtcagtacttggatgggagacctccaaggaaacccaggtgctgcaggaagtggtgctggtgattcagtaggtggcactcttccctctgagtcagtactgaaccagtgccccagcgtggtgttagggggcactgtgctgctggaggtgccgtctttcggatgagacgtaaaaccgaggtcctgaccacttgtggtcattaaagatcccatggcacttttcgcaagagtaggggtgttaaccccggtgtcctggccaaattccaatttgggtaattacattctgcctacctaaattccccctgcagtttcaattggatacggtattcttcacttcctgtcctaaactgttgtgtagtgttgctgtgcgctgttaaacagctgccgcgttccaccccagaggtggctgcatttcagtggtgggtgaagtgatccctgtatgtagcttgtaaagcgctttgggatccttcgggatgaaaggcgctatataaatgcaaggtattattattatt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 286 99.0 Weakly correlated
2 ZNF394 104 99.0 Weakly correlated
3 ZNF263 88 180.0 Weakly correlated
4 ZFP37 83 99.0 Weakly correlated
5 ZNF766 79 43.0 Weakly correlated
6 ZNF2 78 99.0 Weakly correlated
7 ZFP69B 50 99.0 Weakly correlated
8 ZNF18 48 160.0 Weakly correlated
9 ZNF324 46 99.0 Weakly correlated
10 ZNF175 45 94.0 Weakly correlated
11 ZNF589 43 28.9 Weakly correlated
12 ZKSCAN1 42 160.0 Weakly correlated
13 ZNF558 37 99.0 Weakly correlated
14 ZNF610 36 28.9 Weakly correlated
15 ZNF554 34 99.0 Weakly correlated
16 ZNF101 31 43.0 Weakly correlated
17 ZNF584 31 99.0 Weakly correlated
18 ZNF701 29 28.9 Weakly correlated
19 ZNF597 27 94.0 Weakly correlated
20 ZNF317 24 99.0 Weakly correlated
21 ZKSCAN8 22 160.0 Weakly correlated
22 ZNF197 20 99.0 Weakly correlated
23 ZNF680 16 28.9 Weakly correlated
24 ZNF723 13 15.2 Weakly correlated
25 ZNF528 12 43.0 Weakly correlated
26 ZNF479 11 6.4 Weakly correlated
27 ZNF534 11 19.6 Weakly correlated
28 ZNF793 11 99.0 Weakly correlated
29 ZIM3 10 87.0 Weakly correlated
30 ZNF92 10 28.9 Weakly correlated
31 ZNF549 9 87.0 Weakly correlated
32 ZNF257 7 0.0 Weakly correlated
33 ZNF679 7 28.9 Weakly correlated
34 ZNF778 7 74.0 Weakly correlated
35 ZNF695 5 28.9 Weakly correlated
36 ZNF705B 5 28.9 Weakly correlated
37 ZNF792 5 94.0 Weakly correlated
38 ZNF585B 4 99.0 Weakly correlated
39 ZFP57 3 87.0 Weakly correlated
40 ZKSCAN5 3 160.0 Weakly correlated
41 ZNF133 3 99.0 Weakly correlated
42 ZNF140 3 99.0 Weakly correlated
43 ZNF222 3 43.0 Weakly correlated
44 ZNF273 3 28.9 Weakly correlated
45 ZNF425 3 94.0 Weakly correlated
46 ZNF519 3 19.6 Weakly correlated
47 ZNF641 3 99.0 Weakly correlated
48 ZNF674 3 99.0 Weakly correlated
49 ZNF75D 3 94.0 Weakly correlated
50 ZNF816 3 28.9 Weakly correlated
51 ZNF169 2 94.0 Weakly correlated
52 ZNF182 2 99.0 Weakly correlated
53 ZNF251 2 94.0 Weakly correlated
54 ZNF26 2 99.0 Weakly correlated
55 ZNF274 2 99.0 Weakly correlated
56 ZNF343 2 74.0 Weakly correlated
57 ZNF440 2 28.9 Weakly correlated
58 ZNF485 2 94.0 Weakly correlated
59 ZNF486 2 8.6 Weakly correlated
60 ZNF490 2 43.0 Weakly correlated
61 ZNF506 2 28.9 Weakly correlated
62 ZNF510 2 99.0 Weakly correlated
63 ZNF547 2 74.0 Weakly correlated
64 ZNF585A 2 99.0 Weakly correlated
65 ZNF596 2 94.0 Weakly correlated
66 ZNF671 2 94.0 Weakly correlated
67 ZNF675 2 8.6 Weakly correlated
68 ZNF705D 2 28.9 Weakly correlated
69 ZNF735 2 28.9 Weakly correlated
70 ZNF75A 2 94.0 Weakly correlated
71 ZNF823 2 43.0 Weakly correlated
72 ZNF8 2 99.0 Weakly correlated
73 ZNF91 2 6.0 Weakly correlated
74 ZNF12 1 99.0 Weakly correlated
75 ZNF141 1 43.0 Weakly correlated
76 ZNF160 1 74.0 Weakly correlated
77 ZNF189 1 99.0 Weakly correlated
78 ZNF202 1 160.0 Weakly correlated
79 ZNF223 1 43.0 Weakly correlated
80 ZNF224 1 69.0 Weakly correlated
81 ZNF230 1 28.9 Weakly correlated
82 ZNF250 1 99.0 Weakly correlated
83 ZNF28 1 28.9 Weakly correlated
84 ZNF30 1 94.0 Weakly correlated
85 ZNF350 1 99.0 Weakly correlated
86 ZNF420 1 94.0 Weakly correlated
87 ZNF441 1 43.0 Weakly correlated
88 ZNF442 1 43.0 Weakly correlated
89 ZNF44 1 43.0 Weakly correlated
90 ZNF454 1 99.0 Weakly correlated
91 ZNF468 1 28.9 Weakly correlated
92 ZNF471 1 94.0 Weakly correlated
93 ZNF557 1 15.2 Weakly correlated
94 ZNF559 1 74.0 Weakly correlated
95 ZNF560 1 43.0 Weakly correlated
96 ZNF562 1 28.9 Weakly correlated
97 ZNF563 1 28.9 Weakly correlated
98 ZNF605 1 99.0 Weakly correlated
99 ZNF626 1 0.0 Weakly correlated
100 ZNF627 1 74.0 Weakly correlated
101 ZNF681 1 28.9 Weakly correlated
102 ZNF682 1 28.9 Weakly correlated
103 ZNF716 1 19.6 Weakly correlated
104 ZNF736 1 43.0 Weakly correlated
105 ZNF780A 1 43.0 Weakly correlated
106 ZNF790 1 99.0 Weakly correlated
107 ZNF808 1 19.6 Weakly correlated
108 ZNF84 1 99.0 Weakly correlated
109 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF554 12 99.0 Weakly correlated
2 ZNF263 10 180.0 Weakly correlated
3 ZNF2 8 99.0 Weakly correlated
4 ZNF766 8 43.0 Weakly correlated
5 ZFP37 7 99.0 Weakly correlated
6 ZNF382 7 99.0 Weakly correlated
7 ZNF701 5 28.9 Weakly correlated
8 ZNF317 4 99.0 Weakly correlated
9 ZNF793 4 99.0 Weakly correlated
10 ZNF534 4 19.6 Weakly correlated
11 ZNF597 3 94.0 Weakly correlated
12 ZNF723 3 15.2 Weakly correlated
13 ZNF479 3 6.4 Weakly correlated
14 ZNF680 2 28.9 Weakly correlated
15 ZNF257 2 0.0 Weakly correlated
16 ZNF674 2 99.0 Weakly correlated
17 ZNF75D 2 94.0 Weakly correlated
18 ZNF549 2 87.0 Weakly correlated
19 ZNF589 2 28.9 Weakly correlated
20 ZNF18 2 160.0 Weakly correlated
21 ZKSCAN8 2 160.0 Weakly correlated
22 ZFP69B 2 99.0 Weakly correlated
23 ZFP57 2 87.0 Weakly correlated
24 ZNF273 1 28.9 Weakly correlated
25 ZNF562 1 28.9 Weakly correlated
26 ZNF792 1 94.0 Weakly correlated
27 ZNF695 1 28.9 Weakly correlated
28 ZNF627 1 74.0 Weakly correlated
29 ZNF197 1 99.0 Weakly correlated
30 ZNF585A 1 99.0 Weakly correlated
31 ZNF30 1 94.0 Weakly correlated
32 ZNF682 1 28.9 Weakly correlated
33 ZNF675 1 8.6 Weakly correlated
34 ZNF584 1 99.0 Weakly correlated
35 ZNF528 1 43.0 Weakly correlated
36 ZNF596 1 94.0 Weakly correlated
37 ZNF44 1 43.0 Weakly correlated
38 ZNF26 1 99.0 Weakly correlated
39 ZNF175 1 94.0 Weakly correlated
40 ZNF75A 1 94.0 Weakly correlated
41 ZNF671 1 94.0 Weakly correlated
42 ZNF12 1 99.0 Weakly correlated
43 ZKSCAN5 1 160.0 Weakly correlated
44 ZKSCAN1 1 160.0 Weakly correlated
45 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF2 99.0 Weakly correlated
3 ZNF554 99.0 Weakly correlated