ZRdb KZFP & Repeats
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SINE_ALUYK4

  • Name
    ALUYK4
  • Repbase
    AluYb3a2
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000066
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker. Identical to AluYb3a2. Renamed fromAluYb3a2 for nomenclature consistency.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatagcgccactgcagtccggcctgggcgaaagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 30 43.0 Weakly correlated
2 ZNF18 22 160.0 Weakly correlated
3 ZNF182 17 99.0 Weakly correlated
4 ZNF382 15 99.0 Weakly correlated
5 ZNF202 14 160.0 Weakly correlated
6 ZNF394 10 99.0 Weakly correlated
7 ZNF2 10 99.0 Weakly correlated
8 ZFP57 8 87.0 Weakly correlated
9 ZNF766 6 43.0 Weakly correlated
10 ZNF558 6 99.0 Weakly correlated
11 ZNF534 5 19.6 Weakly correlated
12 ZNF251 4 94.0 Weakly correlated
13 ZIM3 4 87.0 Weakly correlated
14 ZFP37 4 99.0 Weakly correlated
15 ZNF705B 4 28.9 Weakly correlated
16 ZNF257 4 0.0 Weakly correlated
17 ZNF101 4 43.0 Weakly correlated
18 ZNF528 3 43.0 Weakly correlated
19 ZNF175 3 94.0 Weakly correlated
20 ZNF519 3 19.6 Weakly correlated
21 ZNF284 3 43.0 Weakly correlated
22 ZNF680 3 28.9 Weakly correlated
23 ZNF649 3 28.9 Weakly correlated
24 ZNF641 3 99.0 Weakly correlated
25 ZFP69B 3 99.0 Weakly correlated
26 ZNF320 3 28.9 Weakly correlated
27 ZNF324 3 99.0 Weakly correlated
28 ZNF679 2 28.9 Weakly correlated
29 ZNF334 2 99.0 Weakly correlated
30 ZNF589 2 28.9 Weakly correlated
31 ZNF610 2 28.9 Weakly correlated
32 ZNF317 2 99.0 Weakly correlated
33 ZNF302 2 43.0 Weakly correlated
34 ZNF157 2 99.0 Weakly correlated
35 ZNF28 2 28.9 Weakly correlated
36 ZNF169 2 94.0 Weakly correlated
37 ZNF133 2 99.0 Weakly correlated
38 ZNF786 2 99.0 Weakly correlated
39 ZNF197 2 99.0 Weakly correlated
40 ZNF793 2 99.0 Weakly correlated
41 ZNF92 1 28.9 Weakly correlated
42 ZNF765 1 8.6 Moderately correlated
43 ZNF626 1 0.0 Weakly correlated
44 ZNF8 1 99.0 Weakly correlated
45 ZNF878 1 43.0 Weakly correlated
46 ZNF792 1 94.0 Weakly correlated
47 ZNF682 1 28.9 Weakly correlated
48 ZNF695 1 28.9 Weakly correlated
49 ZNF700 1 28.9 Weakly correlated
50 ZNF705D 1 28.9 Weakly correlated
51 ZNF716 1 19.6 Weakly correlated
52 ZNF75D 1 94.0 Weakly correlated
53 ZNF471 1 94.0 Weakly correlated
54 ZNF440 1 28.9 Weakly correlated
55 ZNF140 1 99.0 Weakly correlated
56 ZNF141 1 43.0 Weakly correlated
57 ZNF124 1 43.0 Weakly correlated
58 ZNF230 1 28.9 Weakly correlated
59 ZNF263 1 180.0 Weakly correlated
60 ZNF287 1 99.0 Weakly correlated
61 ZKSCAN8 1 160.0 Weakly correlated
62 ZNF33A 1 99.0 Weakly correlated
63 ZNF433 1 43.0 Weakly correlated
64 ZNF605 1 99.0 Weakly correlated
65 ZNF445 1 99.0 Weakly correlated
66 ZNF460 1 74.0 Weakly correlated
67 ZNF468 1 28.9 Weakly correlated
68 ZNF136 1 74.0 Weakly correlated
69 ZNF486 1 8.6 Moderately correlated
70 ZNF514 1 94.0 Weakly correlated
71 ZNF566 1 99.0 Weakly correlated
72 ZNF578 1 15.2 Highly correlated
73 ZNF585B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 27 43.0 Weakly correlated
2 ZNF182 17 99.0 Weakly correlated
3 ZNF18 13 160.0 Weakly correlated
4 ZNF202 10 160.0 Weakly correlated
5 ZNF394 3 99.0 Weakly correlated
6 ZNF519 3 19.6 Weakly correlated
7 ZNF101 3 43.0 Weakly correlated
8 ZNF641 2 99.0 Weakly correlated
9 ZNF284 2 43.0 Weakly correlated
10 ZNF610 2 28.9 Weakly correlated
11 ZNF334 2 99.0 Weakly correlated
12 ZNF695 1 28.9 Weakly correlated
13 ZNF534 1 19.6 Weakly correlated
14 ZNF792 1 94.0 Weakly correlated
15 ZNF468 1 28.9 Weakly correlated
16 ZNF287 1 99.0 Weakly correlated
17 ZNF460 1 74.0 Weakly correlated
18 ZNF382 1 99.0 Weakly correlated
19 ZNF257 1 0.0 Weakly correlated
20 ZNF440 1 28.9 Weakly correlated
21 ZNF680 1 28.9 Weakly correlated
22 ZNF566 1 99.0 Weakly correlated
23 ZNF445 1 99.0 Weakly correlated
24 ZNF765 1 8.6 Moderately correlated
25 ZNF140 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF182 99.0 Weakly correlated