ZRdb KZFP & Repeats
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SINE_ALUYK3

  • Name
    ALUYK3
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0001145
Description :

Assumed intermediate between AluY and AluYk4.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatagcgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 30 43.0 Weakly correlated
2 ZNF394 19 99.0 Weakly correlated
3 ZNF766 15 43.0 Weakly correlated
4 ZNF382 12 99.0 Weakly correlated
5 ZNF18 12 160.0 Weakly correlated
6 ZNF257 10 0.0 Weakly correlated
7 ZNF679 9 28.9 Weakly correlated
8 ZNF680 9 28.9 Weakly correlated
9 ZNF182 9 99.0 Weakly correlated
10 ZNF2 8 99.0 Weakly correlated
11 ZNF202 8 160.0 Weakly correlated
12 ZNF251 8 94.0 Weakly correlated
13 ZNF589 7 28.9 Weakly correlated
14 ZNF324 7 99.0 Weakly correlated
15 ZFP37 6 99.0 Weakly correlated
16 ZNF558 5 99.0 Weakly correlated
17 ZNF284 5 43.0 Weakly correlated
18 ZNF705B 5 28.9 Weakly correlated
19 ZNF723 5 15.2 Moderately correlated
20 ZNF506 5 28.9 Weakly correlated
21 ZFP69B 5 99.0 Weakly correlated
22 ZNF197 4 99.0 Weakly correlated
23 ZNF28 4 28.9 Weakly correlated
24 ZNF707 4 74.0 Weakly correlated
25 ZNF101 4 43.0 Weakly correlated
26 ZKSCAN8 4 160.0 Weakly correlated
27 ZNF175 3 94.0 Weakly correlated
28 ZNF705D 3 28.9 Weakly correlated
29 ZNF160 3 74.0 Weakly correlated
30 ZNF479 3 6.4 Moderately correlated
31 ZNF792 3 94.0 Weakly correlated
32 ZNF534 3 19.6 Highly correlated
33 ZKSCAN1 3 160.0 Weakly correlated
34 ZIM3 3 87.0 Weakly correlated
35 ZNF547 2 74.0 Weakly correlated
36 ZNF677 2 99.0 Weakly correlated
37 ZNF554 2 99.0 Weakly correlated
38 ZNF616 2 43.0 Weakly correlated
39 ZNF610 2 28.9 Weakly correlated
40 ZNF695 2 28.9 Weakly correlated
41 ZNF584 2 99.0 Weakly correlated
42 ZNF519 2 19.6 Highly correlated
43 ZNF334 2 99.0 Weakly correlated
44 ZNF317 2 99.0 Weakly correlated
45 ZNF26 2 99.0 Weakly correlated
46 ZNF263 2 180.0 Weakly correlated
47 ZNF140 2 99.0 Weakly correlated
48 ZFP57 2 87.0 Weakly correlated
49 ZNF730 1 19.6 Highly correlated
50 ZNF747 1 43.0 Weakly correlated
51 ZNF701 1 28.9 Weakly correlated
52 ZNF75D 1 94.0 Weakly correlated
53 ZNF765 1 8.6 Moderately correlated
54 ZNF793 1 99.0 Weakly correlated
55 ZNF829 1 99.0 Weakly correlated
56 ZNF84 1 99.0 Weakly correlated
57 ZNF429 1 28.9 Weakly correlated
58 ZNF133 1 99.0 Weakly correlated
59 ZNF136 1 74.0 Weakly correlated
60 ZNF157 1 99.0 Weakly correlated
61 ZNF264 1 99.0 Weakly correlated
62 ZNF274 1 99.0 Weakly correlated
63 ZNF287 1 99.0 Weakly correlated
64 ZNF347 1 43.0 Weakly correlated
65 ZNF420 1 94.0 Weakly correlated
66 ZNF649 1 28.9 Weakly correlated
67 ZNF460 1 74.0 Weakly correlated
68 ZNF485 1 94.0 Weakly correlated
69 ZNF486 1 8.6 Moderately correlated
70 ZNF528 1 43.0 Weakly correlated
71 ZNF543 1 99.0 Weakly correlated
72 ZNF559 1 74.0 Weakly correlated
73 ZNF562 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 29 43.0 Weakly correlated
2 ZNF182 9 99.0 Weakly correlated
3 ZNF18 8 160.0 Weakly correlated
4 ZNF257 7 0.0 Weakly correlated
5 ZNF202 6 160.0 Weakly correlated
6 ZNF394 5 99.0 Weakly correlated
7 ZNF101 3 43.0 Weakly correlated
8 ZIM3 2 87.0 Weakly correlated
9 ZNF140 2 99.0 Weakly correlated
10 ZNF695 2 28.9 Weakly correlated
11 ZNF284 2 43.0 Weakly correlated
12 ZFP37 2 99.0 Weakly correlated
13 ZNF519 2 19.6 Highly correlated
14 ZNF534 2 19.6 Highly correlated
15 ZNF334 2 99.0 Weakly correlated
16 ZNF610 1 28.9 Weakly correlated
17 ZNF324 1 99.0 Weakly correlated
18 ZNF792 1 94.0 Weakly correlated
19 ZNF707 1 74.0 Weakly correlated
20 ZNF616 1 43.0 Weakly correlated
21 ZNF460 1 74.0 Weakly correlated
22 ZNF543 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF182 99.0 Weakly correlated