ZRdb KZFP & Repeats
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SINE_ALUYK2

  • Name
    ALUYK2
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0001169
Description :

Assumed intermediate between AluY and AluYK4
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgcgccactgcactccagcctgggcganagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 24 43.0 Weakly correlated
2 ZNF18 22 160.0 Weakly correlated
3 ZNF394 20 99.0 Weakly correlated
4 ZNF441 16 43.0 Weakly correlated
5 ZNF382 15 99.0 Weakly correlated
6 ZNF182 13 99.0 Weakly correlated
7 ZNF202 10 160.0 Weakly correlated
8 ZNF2 9 99.0 Weakly correlated
9 ZFP69B 6 99.0 Weakly correlated
10 ZNF766 6 43.0 Weakly correlated
11 ZNF101 5 43.0 Weakly correlated
12 ZFP57 4 87.0 Weakly correlated
13 ZNF479 4 6.4 Moderately correlated
14 ZNF460 4 74.0 Weakly correlated
15 ZNF257 4 0.0 Weakly correlated
16 ZFP37 4 99.0 Weakly correlated
17 ZKSCAN1 4 160.0 Weakly correlated
18 ZNF8 3 99.0 Weakly correlated
19 ZNF175 3 94.0 Weakly correlated
20 ZNF534 3 19.6 Highly correlated
21 ZNF140 3 99.0 Weakly correlated
22 ZNF324 3 99.0 Weakly correlated
23 ZNF680 3 28.9 Weakly correlated
24 ZNF705B 3 28.9 Weakly correlated
25 ZNF705D 2 28.9 Weakly correlated
26 ZNF589 2 28.9 Weakly correlated
27 ZNF610 2 28.9 Weakly correlated
28 ZNF585B 2 99.0 Weakly correlated
29 ZNF641 2 99.0 Weakly correlated
30 ZNF519 2 19.6 Highly correlated
31 ZNF490 2 43.0 Weakly correlated
32 ZIM3 2 87.0 Weakly correlated
33 ZNF793 2 99.0 Weakly correlated
34 ZKSCAN8 2 160.0 Weakly correlated
35 ZNF334 2 99.0 Weakly correlated
36 ZNF169 2 94.0 Weakly correlated
37 ZNF792 2 94.0 Weakly correlated
38 ZNF251 2 94.0 Weakly correlated
39 ZNF189 2 99.0 Weakly correlated
40 ZNF92 1 28.9 Weakly correlated
41 ZNF695 1 28.9 Weakly correlated
42 ZNF707 1 74.0 Weakly correlated
43 ZNF679 1 28.9 Weakly correlated
44 ZNF671 1 94.0 Weakly correlated
45 ZNF780A 1 43.0 Weakly correlated
46 ZNF607 1 43.0 Weakly correlated
47 ZNF587 1 28.9 Weakly correlated
48 ZNF584 1 99.0 Weakly correlated
49 ZNF567 1 99.0 Weakly correlated
50 ZNF547 1 74.0 Weakly correlated
51 ZNF510 1 99.0 Weakly correlated
52 ZNF485 1 94.0 Weakly correlated
53 ZNF468 1 28.9 Weakly correlated
54 ZNF445 1 99.0 Weakly correlated
55 ZNF343 1 74.0 Weakly correlated
56 ZNF317 1 99.0 Weakly correlated
57 ZNF287 1 99.0 Weakly correlated
58 ZNF264 1 99.0 Weakly correlated
59 ZNF197 1 99.0 Weakly correlated
60 ZNF17 1 69.0 Weakly correlated
61 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF284 23 43.0 Weakly correlated
2 ZNF18 13 160.0 Weakly correlated
3 ZNF441 13 43.0 Weakly correlated
4 ZNF182 11 99.0 Weakly correlated
5 ZNF202 8 160.0 Weakly correlated
6 ZNF394 4 99.0 Weakly correlated
7 ZNF460 4 74.0 Weakly correlated
8 ZNF101 3 43.0 Weakly correlated
9 ZNF257 3 0.0 Weakly correlated
10 ZNF334 2 99.0 Weakly correlated
11 ZNF140 2 99.0 Weakly correlated
12 ZFP37 2 99.0 Weakly correlated
13 ZNF641 1 99.0 Weakly correlated
14 ZNF610 1 28.9 Weakly correlated
15 ZNF793 1 99.0 Weakly correlated
16 ZNF792 1 94.0 Weakly correlated
17 ZNF485 1 94.0 Weakly correlated
18 ZNF780A 1 43.0 Weakly correlated
19 ZNF519 1 19.6 Highly correlated
20 ZNF264 1 99.0 Weakly correlated
21 ZNF468 1 28.9 Weakly correlated
22 ZNF587 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF182 99.0 Weakly correlated