ZRdb KZFP & Repeats
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SINE_ALUYK12

  • Name
    ALUYK12
  • Repbase
    AluYk12
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000065
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggtgggcgcctgtaatcccagctactcgggaggctgaggcaggagaatggcatgaacccaagaggcggagcttgcagtgagccgggatagcgccactgcagtccagcttgggcgaaagagtgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 5 43.0 Weakly correlated
2 ZNF394 4 99.0 Weakly correlated
3 ZNF382 3 99.0 Weakly correlated
4 ZFP37 2 99.0 Weakly correlated
5 ZNF558 2 99.0 Weakly correlated
6 ZNF2 2 99.0 Weakly correlated
7 ZNF766 2 43.0 Weakly correlated
8 ZNF792 2 94.0 Weakly correlated
9 ZFP28 2 99.0 Weakly correlated
10 ZNF101 2 43.0 Weakly correlated
11 ZFP69B 2 99.0 Weakly correlated
12 ZNF793 1 99.0 Weakly correlated
13 ZNF81 1 99.0 Weakly correlated
14 ZNF705B 1 28.9 Weakly correlated
15 ZNF680 1 28.9 Weakly correlated
16 ZNF850 1 28.9 Weakly correlated
17 ZNF679 1 28.9 Weakly correlated
18 ZNF675 1 8.6 Moderately correlated
19 ZNF610 1 28.9 Weakly correlated
20 ZNF585A 1 99.0 Weakly correlated
21 ZNF429 1 28.9 Weakly correlated
22 ZNF324 1 99.0 Weakly correlated
23 ZNF28 1 28.9 Weakly correlated
24 ZNF284 1 43.0 Weakly correlated
25 ZNF264 1 99.0 Weakly correlated
26 ZNF257 1 0.0 Weakly correlated
27 ZNF189 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 3 43.0 Weakly correlated
2 ZNF101 1 43.0 Weakly correlated
3 ZNF264 1 99.0 Weakly correlated
4 ZNF284 1 43.0 Weakly correlated
5 ZNF792 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats