ZRdb KZFP & Repeats
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SINE_ALUYK11

  • Name
    ALUYK11
  • Repbase
    AluYk11
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000064
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacaaggtcaggagatcgagaccatcttggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagattgcgccactgcaatccggcctgggctaaagagcgggactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 30 99.0 Weakly correlated
2 ZNF18 16 160.0 Weakly correlated
3 ZNF394 12 99.0 Weakly correlated
4 ZNF2 11 99.0 Weakly correlated
5 ZFP37 8 99.0 Weakly correlated
6 ZFP69B 8 99.0 Weakly correlated
7 ZNF519 7 19.6 Weakly correlated
8 ZNF182 6 99.0 Weakly correlated
9 ZNF506 5 28.9 Weakly correlated
10 ZNF317 5 99.0 Weakly correlated
11 ZNF274 5 99.0 Weakly correlated
12 ZNF554 4 99.0 Weakly correlated
13 ZFP28 4 99.0 Weakly correlated
14 ZNF558 4 99.0 Weakly correlated
15 ZNF680 4 28.9 Weakly correlated
16 ZNF284 4 43.0 Weakly correlated
17 ZNF547 3 74.0 Weakly correlated
18 ZNF479 3 6.4 Moderately correlated
19 ZNF610 3 28.9 Weakly correlated
20 ZNF490 3 43.0 Weakly correlated
21 ZNF263 3 180.0 Weakly correlated
22 ZNF257 3 0.0 Weakly correlated
23 ZNF251 3 94.0 Weakly correlated
24 ZNF705B 3 28.9 Weakly correlated
25 ZNF707 3 74.0 Weakly correlated
26 ZNF175 3 94.0 Weakly correlated
27 ZNF75D 3 94.0 Weakly correlated
28 ZNF101 3 43.0 Weakly correlated
29 ZFP57 3 87.0 Weakly correlated
30 ZNF723 2 15.2 Highly correlated
31 ZNF792 2 94.0 Weakly correlated
32 ZNF91 2 6.0 Moderately correlated
33 ZNF92 2 28.9 Weakly correlated
34 ZNF471 2 94.0 Weakly correlated
35 ZKSCAN1 2 160.0 Weakly correlated
36 ZNF133 2 99.0 Weakly correlated
37 ZNF324 2 99.0 Weakly correlated
38 ZNF786 1 99.0 Weakly correlated
39 ZNF705D 1 28.9 Weakly correlated
40 ZNF222 1 43.0 Weakly correlated
41 ZNF160 1 74.0 Weakly correlated
42 ZNF730 1 19.6 Weakly correlated
43 ZNF735 1 28.9 Weakly correlated
44 ZNF140 1 99.0 Weakly correlated
45 ZNF765 1 8.6 Moderately correlated
46 ZNF766 1 43.0 Weakly correlated
47 ZNF701 1 28.9 Weakly correlated
48 ZNF799 1 43.0 Weakly correlated
49 ZNF813 1 28.9 Weakly correlated
50 ZIM3 1 87.0 Weakly correlated
51 ZNF248 1 99.0 Weakly correlated
52 ZNF486 1 8.6 Moderately correlated
53 ZNF28 1 28.9 Weakly correlated
54 ZNF671 1 94.0 Weakly correlated
55 ZNF611 1 19.6 Weakly correlated
56 ZNF302 1 43.0 Weakly correlated
57 ZNF589 1 28.9 Weakly correlated
58 ZNF584 1 99.0 Weakly correlated
59 ZNF573 1 94.0 Weakly correlated
60 ZNF429 1 28.9 Weakly correlated
61 ZNF441 1 43.0 Weakly correlated
62 ZNF534 1 19.6 Weakly correlated
63 ZNF468 1 28.9 Weakly correlated
64 ZNF485 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF519 6 19.6 Weakly correlated
2 ZFP37 3 99.0 Weakly correlated
3 ZNF182 3 99.0 Weakly correlated
4 ZNF506 3 28.9 Weakly correlated
5 ZNF18 3 160.0 Weakly correlated
6 ZFP69B 1 99.0 Weakly correlated
7 ZNF479 1 6.4 Moderately correlated
8 ZNF263 1 180.0 Weakly correlated
9 ZNF317 1 99.0 Weakly correlated
10 ZNF382 1 99.0 Weakly correlated
11 ZNF257 1 0.0 Weakly correlated
12 ZNF554 1 99.0 Weakly correlated
13 ZNF610 1 28.9 Weakly correlated
14 ZNF765 1 8.6 Moderately correlated
15 ZNF91 1 6.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats