ZRdb KZFP & Repeats
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SINE_ALUYJ4

  • Name
    ALUYJ4
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    0.0 Mya
  • Dfam Id
    DF0001320
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctgctcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 142 43.0 Weakly correlated
2 ZNF382 110 99.0 Weakly correlated
3 ZNF394 107 99.0 Weakly correlated
4 ZNF18 75 160.0 Weakly correlated
5 ZNF680 49 28.9 Weakly correlated
6 ZNF2 48 99.0 Weakly correlated
7 ZNF558 42 99.0 Weakly correlated
8 ZNF101 41 43.0 Weakly correlated
9 ZFP37 39 99.0 Weakly correlated
10 ZNF140 35 99.0 Weakly correlated
11 ZNF324 33 99.0 Weakly correlated
12 ZNF182 32 99.0 Weakly correlated
13 ZFP69B 30 99.0 Weakly correlated
14 ZNF257 30 0.0 Highly correlated
15 ZKSCAN1 28 160.0 Weakly correlated
16 ZNF202 26 160.0 Weakly correlated
17 ZNF544 26 0.0 Highly correlated
18 ZNF705B 26 28.9 Weakly correlated
19 ZNF766 25 43.0 Weakly correlated
20 ZNF792 24 94.0 Weakly correlated
21 ZNF519 23 19.6 Weakly correlated
22 ZNF547 22 74.0 Weakly correlated
23 ZNF175 21 94.0 Weakly correlated
24 ZNF671 21 94.0 Weakly correlated
25 ZNF251 20 94.0 Weakly correlated
26 ZNF317 20 99.0 Weakly correlated
27 ZNF610 19 28.9 Weakly correlated
28 ZNF641 19 99.0 Weakly correlated
29 ZNF215 18 99.0 Weakly correlated
30 ZNF486 18 8.6 Weakly correlated
31 ZNF707 18 74.0 Weakly correlated
32 ZNF347 17 43.0 Weakly correlated
33 ZNF585B 16 99.0 Weakly correlated
34 ZNF160 15 74.0 Weakly correlated
35 ZNF8 15 99.0 Weakly correlated
36 ZNF274 14 99.0 Weakly correlated
37 ZNF487 14 28.9 Weakly correlated
38 ZNF726 14 28.9 Weakly correlated
39 ZNF845 14 28.9 Weakly correlated
40 ZKSCAN4 13 99.0 Weakly correlated
41 ZNF284 13 43.0 Weakly correlated
42 ZNF20 12 43.0 Weakly correlated
43 ZNF256 12 74.0 Weakly correlated
44 ZNF514 12 94.0 Weakly correlated
45 ZNF746 12 99.0 Weakly correlated
46 ZNF263 11 180.0 Weakly correlated
47 ZNF264 11 99.0 Weakly correlated
48 ZNF583 11 99.0 Weakly correlated
49 ZNF354C 10 99.0 Weakly correlated
50 ZNF416 10 43.0 Weakly correlated
51 ZNF66 10 0.0 Highly correlated
52 ZNF763 10 15.2 Weakly correlated
53 ZNF772 10 94.0 Weakly correlated
54 ZNF850 10 28.9 Weakly correlated
55 ZNF189 9 99.0 Weakly correlated
56 ZNF234 9 99.0 Weakly correlated
57 ZNF28 9 28.9 Weakly correlated
58 ZNF460 9 74.0 Weakly correlated
59 ZNF479 9 6.4 Weakly correlated
60 ZNF528 9 43.0 Weakly correlated
61 ZNF578 9 15.2 Weakly correlated
62 ZNF607 9 43.0 Weakly correlated
63 ZNF679 9 28.9 Weakly correlated
64 ZNF689 9 99.0 Weakly correlated
65 ZFP30 8 99.0 Weakly correlated
66 ZFP57 8 87.0 Weakly correlated
67 ZIM3 8 87.0 Weakly correlated
68 ZNF213 8 180.0 Weakly correlated
69 ZNF230 8 28.9 Weakly correlated
70 ZNF253 8 19.6 Weakly correlated
71 ZNF420 8 94.0 Weakly correlated
72 ZNF510 8 99.0 Weakly correlated
73 ZNF530 8 28.9 Weakly correlated
74 ZNF534 8 19.6 Weakly correlated
75 ZNF559 8 74.0 Weakly correlated
76 ZNF589 8 28.9 Weakly correlated
77 ZNF688 8 160.0 Weakly correlated
78 ZNF695 8 28.9 Weakly correlated
79 ZNF727 8 19.6 Weakly correlated
80 ZNF221 7 74.0 Weakly correlated
81 ZNF429 7 28.9 Weakly correlated
82 ZNF658 7 99.0 Weakly correlated
83 ZNF677 7 99.0 Weakly correlated
84 ZNF705D 7 28.9 Weakly correlated
85 ZNF705E 7 0.0 Highly correlated
86 ZNF723 7 15.2 Weakly correlated
87 ZNF729 7 8.6 Weakly correlated
88 ZNF735 7 28.9 Weakly correlated
89 ZNF814 7 0.0 Highly correlated
90 ZNF177 6 94.0 Weakly correlated
91 ZNF197 6 99.0 Weakly correlated
92 ZNF425 6 94.0 Weakly correlated
93 ZNF500 6 160.0 Weakly correlated
94 ZNF560 6 43.0 Weakly correlated
95 ZNF597 6 94.0 Weakly correlated
96 ZNF700 6 28.9 Weakly correlated
97 ZNF701 6 28.9 Weakly correlated
98 ZNF717 6 0.0 Highly correlated
99 ZNF728 6 19.6 Weakly correlated
100 ZNF878 6 43.0 Weakly correlated
101 ZKSCAN8 5 160.0 Weakly correlated
102 ZNF471 5 94.0 Weakly correlated
103 ZNF473 5 43.0 Weakly correlated
104 ZNF490 5 43.0 Weakly correlated
105 ZNF57 5 28.9 Weakly correlated
106 ZNF582 5 99.0 Weakly correlated
107 ZNF616 5 43.0 Weakly correlated
108 ZNF718 5 19.6 Weakly correlated
109 ZNF75D 5 94.0 Weakly correlated
110 ZNF778 5 74.0 Weakly correlated
111 ZNF77 5 87.0 Weakly correlated
112 ZNF786 5 99.0 Weakly correlated
113 ZNF91 5 6.0 Weakly correlated
114 ZFP90 4 99.0 Weakly correlated
115 ZNF141 4 43.0 Weakly correlated
116 ZNF195 4 28.9 Weakly correlated
117 ZNF19 4 99.0 Weakly correlated
118 ZNF287 4 99.0 Weakly correlated
119 ZNF320 4 28.9 Weakly correlated
120 ZNF426 4 87.0 Weakly correlated
121 ZNF443 4 19.6 Weakly correlated
122 ZNF446 4 94.0 Weakly correlated
123 ZNF506 4 28.9 Weakly correlated
124 ZNF555 4 94.0 Weakly correlated
125 ZNF568 4 99.0 Weakly correlated
126 ZNF569 4 99.0 Weakly correlated
127 ZNF585A 4 99.0 Weakly correlated
128 ZNF699 4 99.0 Weakly correlated
129 ZNF747 4 43.0 Weakly correlated
130 ZNF761 4 19.6 Weakly correlated
131 ZNF813 4 28.9 Weakly correlated
132 ZNF92 4 28.9 Weakly correlated
133 ZNF136 3 74.0 Weakly correlated
134 ZNF223 3 43.0 Weakly correlated
135 ZNF224 3 69.0 Weakly correlated
136 ZNF233 3 99.0 Weakly correlated
137 ZNF273 3 28.9 Weakly correlated
138 ZNF286A 3 160.0 Weakly correlated
139 ZNF302 3 43.0 Weakly correlated
140 ZNF30 3 94.0 Weakly correlated
141 ZNF331 3 94.0 Weakly correlated
142 ZNF333 3 99.0 Weakly correlated
143 ZNF354A 3 99.0 Weakly correlated
144 ZNF432 3 99.0 Weakly correlated
145 ZNF445 3 99.0 Weakly correlated
146 ZNF483 3 99.0 Weakly correlated
147 ZNF484 3 99.0 Weakly correlated
148 ZNF563 3 28.9 Weakly correlated
149 ZNF584 3 99.0 Weakly correlated
150 ZNF613 3 99.0 Weakly correlated
151 ZNF649 3 28.9 Weakly correlated
152 ZNF793 3 99.0 Weakly correlated
153 ZNF805 3 99.0 Weakly correlated
154 ZNF816 3 28.9 Weakly correlated
155 ZNF84 3 99.0 Weakly correlated
156 ZNF85 3 28.9 Weakly correlated
157 ZFP28 2 99.0 Weakly correlated
158 ZKSCAN5 2 160.0 Weakly correlated
159 ZNF100 2 28.9 Weakly correlated
160 ZNF135 2 94.0 Weakly correlated
161 ZNF17 2 69.0 Weakly correlated
162 ZNF229 2 99.0 Weakly correlated
163 ZNF250 2 99.0 Weakly correlated
164 ZNF268 2 94.0 Weakly correlated
165 ZNF26 2 99.0 Weakly correlated
166 ZNF282 2 319.0 Weakly correlated
167 ZNF350 2 99.0 Weakly correlated
168 ZNF418 2 43.0 Weakly correlated
169 ZNF419 2 28.9 Weakly correlated
170 ZNF43 2 43.0 Weakly correlated
171 ZNF440 2 28.9 Weakly correlated
172 ZNF454 2 99.0 Weakly correlated
173 ZNF461 2 99.0 Weakly correlated
174 ZNF468 2 28.9 Weakly correlated
175 ZNF485 2 94.0 Weakly correlated
176 ZNF549 2 87.0 Weakly correlated
177 ZNF551 2 94.0 Weakly correlated
178 ZNF554 2 99.0 Weakly correlated
179 ZNF556 2 94.0 Weakly correlated
180 ZNF561 2 43.0 Weakly correlated
181 ZNF586 2 43.0 Weakly correlated
182 ZNF587 2 28.9 Weakly correlated
183 ZNF605 2 99.0 Weakly correlated
184 ZNF611 2 19.6 Weakly correlated
185 ZNF630 2 94.0 Weakly correlated
186 ZNF667 2 99.0 Weakly correlated
187 ZNF675 2 8.6 Weakly correlated
188 ZNF789 2 99.0 Weakly correlated
189 ZNF823 2 43.0 Weakly correlated
190 ZNF829 2 99.0 Weakly correlated
191 ZNF93 2 8.6 Weakly correlated
192 ZFP69 1 99.0 Weakly correlated
193 ZFP82 1 99.0 Weakly correlated
194 ZNF10 1 99.0 Weakly correlated
195 ZNF114 1 28.9 Weakly correlated
196 ZNF12 1 99.0 Weakly correlated
197 ZNF132 1 94.0 Weakly correlated
198 ZNF184 1 99.0 Weakly correlated
199 ZNF211 1 94.0 Weakly correlated
200 ZNF214 1 99.0 Weakly correlated
201 ZNF248 1 99.0 Weakly correlated
202 ZNF254 1 43.0 Weakly correlated
203 ZNF267 1 43.0 Weakly correlated
204 ZNF300 1 99.0 Weakly correlated
205 ZNF304 1 99.0 Weakly correlated
206 ZNF33A 1 99.0 Weakly correlated
207 ZNF34 1 99.0 Weakly correlated
208 ZNF37A 1 99.0 Weakly correlated
209 ZNF41 1 99.0 Weakly correlated
210 ZNF430 1 19.6 Weakly correlated
211 ZNF436 1 180.0 Weakly correlated
212 ZNF442 1 43.0 Weakly correlated
213 ZNF480 1 43.0 Weakly correlated
214 ZNF546 1 99.0 Weakly correlated
215 ZNF573 1 94.0 Weakly correlated
216 ZNF595 1 43.0 Weakly correlated
217 ZNF596 1 94.0 Weakly correlated
218 ZNF620 1 99.0 Weakly correlated
219 ZNF624 1 99.0 Weakly correlated
220 ZNF626 1 0.0 Highly correlated
221 ZNF627 1 74.0 Weakly correlated
222 ZNF669 1 43.0 Weakly correlated
223 ZNF709 1 87.0 Weakly correlated
224 ZNF713 1 94.0 Weakly correlated
225 ZNF716 1 19.6 Weakly correlated
226 ZNF736 1 43.0 Weakly correlated
227 ZNF764 1 160.0 Weakly correlated
228 ZNF773 1 94.0 Weakly correlated
229 ZNF7 1 99.0 Weakly correlated
230 ZNF808 1 19.6 Weakly correlated
231 ZNF81 1 99.0 Weakly correlated
232 ZNF846 1 74.0 Weakly correlated
233 ZNF879 1 99.0 Weakly correlated
234 ZNF90 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 135 43.0 Weakly correlated
2 ZNF18 33 160.0 Weakly correlated
3 ZNF101 27 43.0 Weakly correlated
4 ZNF182 26 99.0 Weakly correlated
5 ZNF257 24 0.0 Highly correlated
6 ZNF394 21 99.0 Weakly correlated
7 ZNF140 17 99.0 Weakly correlated
8 ZNF519 17 19.6 Weakly correlated
9 ZNF544 14 0.0 Highly correlated
10 ZNF202 11 160.0 Weakly correlated
11 ZNF284 10 43.0 Weakly correlated
12 ZNF460 8 74.0 Weakly correlated
13 ZNF583 7 99.0 Weakly correlated
14 ZNF792 7 94.0 Weakly correlated
15 ZNF610 7 28.9 Weakly correlated
16 ZNF487 7 28.9 Weakly correlated
17 ZKSCAN4 6 99.0 Weakly correlated
18 ZNF772 5 94.0 Weakly correlated
19 ZNF347 5 43.0 Weakly correlated
20 ZNF20 5 43.0 Weakly correlated
21 ZNF514 4 94.0 Weakly correlated
22 ZNF763 4 15.2 Weakly correlated
23 ZNF695 4 28.9 Weakly correlated
24 ZNF607 4 43.0 Weakly correlated
25 ZNF416 4 43.0 Weakly correlated
26 ZNF728 4 19.6 Weakly correlated
27 ZNF641 4 99.0 Weakly correlated
28 ZNF688 4 160.0 Weakly correlated
29 ZNF287 4 99.0 Weakly correlated
30 ZNF727 3 19.6 Weakly correlated
31 ZNF264 3 99.0 Weakly correlated
32 ZNF616 3 43.0 Weakly correlated
33 ZNF814 3 0.0 Highly correlated
34 ZNF746 3 99.0 Weakly correlated
35 ZFP37 3 99.0 Weakly correlated
36 ZNF726 3 28.9 Weakly correlated
37 ZNF445 3 99.0 Weakly correlated
38 ZNF195 2 28.9 Weakly correlated
39 ZNF253 2 19.6 Weakly correlated
40 ZNF354C 2 99.0 Weakly correlated
41 ZNF425 2 94.0 Weakly correlated
42 ZNF677 2 99.0 Weakly correlated
43 ZNF429 2 28.9 Weakly correlated
44 ZNF454 2 99.0 Weakly correlated
45 ZNF221 2 74.0 Weakly correlated
46 ZNF443 2 19.6 Weakly correlated
47 ZNF786 2 99.0 Weakly correlated
48 ZNF473 2 43.0 Weakly correlated
49 ZNF705B 2 28.9 Weakly correlated
50 ZNF189 2 99.0 Weakly correlated
51 ZNF555 2 94.0 Weakly correlated
52 ZNF486 2 8.6 Weakly correlated
53 ZNF530 2 28.9 Weakly correlated
54 ZNF764 1 160.0 Weakly correlated
55 ZNF534 1 19.6 Weakly correlated
56 ZNF251 1 94.0 Weakly correlated
57 ZNF611 1 19.6 Weakly correlated
58 ZNF613 1 99.0 Weakly correlated
59 ZNF689 1 99.0 Weakly correlated
60 ZNF135 1 94.0 Weakly correlated
61 ZNF585B 1 99.0 Weakly correlated
62 ZNF546 1 99.0 Weakly correlated
63 ZNF229 1 99.0 Weakly correlated
64 ZNF461 1 99.0 Weakly correlated
65 ZNF729 1 8.6 Weakly correlated
66 ZNF300 1 99.0 Weakly correlated
67 ZNF506 1 28.9 Weakly correlated
68 ZNF184 1 99.0 Weakly correlated
69 ZNF213 1 180.0 Weakly correlated
70 ZNF286A 1 160.0 Weakly correlated
71 ZNF446 1 94.0 Weakly correlated
72 ZNF19 1 99.0 Weakly correlated
73 ZNF558 1 99.0 Weakly correlated
74 ZNF585A 1 99.0 Weakly correlated
75 ZNF587 1 28.9 Weakly correlated
76 ZNF716 1 19.6 Weakly correlated
77 ZNF132 1 94.0 Weakly correlated
78 ZNF761 1 19.6 Weakly correlated
79 ZNF705D 1 28.9 Weakly correlated
80 ZNF630 1 94.0 Weakly correlated
81 ZNF28 1 28.9 Weakly correlated
82 ZNF57 1 28.9 Weakly correlated
83 ZNF569 1 99.0 Weakly correlated
84 ZNF568 1 99.0 Weakly correlated
85 ZNF705E 1 0.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF182 99.0 Weakly correlated
2 ZNF441 43.0 Weakly correlated
3 ZNF792 94.0 Weakly correlated