ZRdb KZFP & Repeats
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SINE_ALUYI6_4D

  • Name
    ALUYI6_4D
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    0.0 Mya
  • Dfam Id
    DF0001316
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggcggagcttgcagtgagccgagattgcgccactgcactcccacctgggccacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 3 180.0 Weakly correlated
2 ZNF324 2 99.0 Weakly correlated
3 ZNF486 2 8.6 Weakly correlated
4 ZNF85 2 28.9 Weakly correlated
5 ZNF257 1 0.0 Highly correlated
6 ZNF317 1 99.0 Weakly correlated
7 ZNF441 1 43.0 Weakly correlated
8 ZNF534 1 19.6 Weakly correlated
9 ZNF679 1 28.9 Weakly correlated
10 ZNF705B 1 28.9 Weakly correlated
11 ZNF705D 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 1 43.0 Weakly correlated
2 ZNF257 1 0.0 Highly correlated
3 ZNF324 1 99.0 Weakly correlated
4 ZNF534 1 19.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats