ZRdb KZFP & Repeats
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SINE_ALUYI6

  • Name
    ALUYI6
  • Repbase
    No find
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0001197
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcttgtaatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtgatggcgggcgcctgtagtcccagctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagattgcgccactgcactcccgcctgggccacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 14 99.0 Weakly correlated
2 ZNF394 11 99.0 Weakly correlated
3 ZNF202 11 160.0 Weakly correlated
4 ZNF2 8 99.0 Weakly correlated
5 ZNF18 8 160.0 Weakly correlated
6 ZFP37 7 99.0 Weakly correlated
7 ZNF441 6 43.0 Weakly correlated
8 ZNF558 5 99.0 Weakly correlated
9 ZNF324 4 99.0 Weakly correlated
10 ZNF766 4 43.0 Weakly correlated
11 ZFP69B 4 99.0 Weakly correlated
12 ZNF610 3 28.9 Weakly correlated
13 ZNF101 3 43.0 Weakly correlated
14 ZNF680 3 28.9 Weakly correlated
15 ZNF317 3 99.0 Weakly correlated
16 ZNF263 3 180.0 Weakly correlated
17 ZNF284 3 43.0 Weakly correlated
18 ZNF182 2 99.0 Weakly correlated
19 ZNF589 2 28.9 Weakly correlated
20 ZNF597 2 94.0 Weakly correlated
21 ZFP57 2 87.0 Weakly correlated
22 ZNF519 2 19.6 Weakly correlated
23 ZNF461 2 99.0 Weakly correlated
24 ZKSCAN1 2 160.0 Weakly correlated
25 ZNF257 2 0.0 Weakly correlated
26 ZNF175 2 94.0 Weakly correlated
27 ZNF160 2 74.0 Weakly correlated
28 ZNF792 2 94.0 Weakly correlated
29 ZNF251 2 94.0 Weakly correlated
30 ZNF689 1 99.0 Weakly correlated
31 ZNF850 1 28.9 Weakly correlated
32 ZNF772 1 94.0 Weakly correlated
33 ZNF605 1 99.0 Weakly correlated
34 ZNF607 1 43.0 Weakly correlated
35 ZNF84 1 99.0 Weakly correlated
36 ZNF641 1 99.0 Weakly correlated
37 ZNF845 1 28.9 Weakly correlated
38 ZNF677 1 99.0 Weakly correlated
39 ZNF814 1 0.0 Weakly correlated
40 ZNF92 1 28.9 Weakly correlated
41 ZNF682 1 28.9 Weakly correlated
42 ZNF688 1 160.0 Weakly correlated
43 ZNF746 1 99.0 Weakly correlated
44 ZNF695 1 28.9 Weakly correlated
45 ZNF763 1 15.2 Highly correlated
46 ZNF700 1 28.9 Weakly correlated
47 ZNF705B 1 28.9 Weakly correlated
48 ZNF705D 1 28.9 Weakly correlated
49 ZNF717 1 0.0 Weakly correlated
50 ZNF773 1 94.0 Weakly correlated
51 ZNF726 1 28.9 Weakly correlated
52 ZNF727 1 19.6 Weakly correlated
53 ZFP30 1 99.0 Weakly correlated
54 ZNF91 1 6.0 Moderately correlated
55 ZNF729 1 8.6 Moderately correlated
56 ZNF420 1 94.0 Weakly correlated
57 ZFP69 1 99.0 Weakly correlated
58 ZIK1 1 87.0 Weakly correlated
59 ZKSCAN4 1 99.0 Weakly correlated
60 ZNF195 1 28.9 Weakly correlated
61 ZNF20 1 43.0 Weakly correlated
62 ZNF213 1 180.0 Weakly correlated
63 ZNF215 1 99.0 Weakly correlated
64 ZNF253 1 19.6 Weakly correlated
65 ZNF256 1 74.0 Weakly correlated
66 ZNF264 1 99.0 Weakly correlated
67 ZNF33A 1 99.0 Weakly correlated
68 ZNF347 1 43.0 Weakly correlated
69 ZNF350 1 99.0 Weakly correlated
70 ZNF416 1 43.0 Weakly correlated
71 ZNF584 1 99.0 Weakly correlated
72 ZNF443 1 19.6 Weakly correlated
73 ZNF446 1 94.0 Weakly correlated
74 ZNF44 1 43.0 Weakly correlated
75 ZNF460 1 74.0 Weakly correlated
76 ZNF473 1 43.0 Weakly correlated
77 ZNF487 1 28.9 Weakly correlated
78 ZNF490 1 43.0 Weakly correlated
79 ZNF514 1 94.0 Weakly correlated
80 ZNF544 1 0.0 Weakly correlated
81 ZNF554 1 99.0 Weakly correlated
82 ZNF568 1 99.0 Weakly correlated
83 ZNF569 1 99.0 Weakly correlated
84 ZNF578 1 15.2 Highly correlated
85 ZNF583 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF202 10 160.0 Weakly correlated
2 ZNF441 6 43.0 Weakly correlated
3 ZFP37 3 99.0 Weakly correlated
4 ZNF101 3 43.0 Weakly correlated
5 ZNF284 3 43.0 Weakly correlated
6 ZNF18 2 160.0 Weakly correlated
7 ZNF182 2 99.0 Weakly correlated
8 ZNF519 2 19.6 Weakly correlated
9 ZNF460 1 74.0 Weakly correlated
10 ZNF554 1 99.0 Weakly correlated
11 ZNF641 1 99.0 Weakly correlated
12 ZNF766 1 43.0 Weakly correlated
13 ZNF350 1 99.0 Weakly correlated
14 ZNF792 1 94.0 Weakly correlated
15 ZNF257 1 0.0 Weakly correlated
16 ZNF610 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats