ZRdb KZFP & Repeats
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SINE_ALUYH9

  • Name
    ALUYH9
  • Repbase
    AluYh9
  • Type
    SINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000063
Description :

Alu elements derive from a pair of internally-deleted 7SL RNA monomersthat are joined by an A-rich linker.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggccgggcgcggtggctcacgcctgtaatcccagcactttgggaggcagaggcgggcggatcatgaggtcaggagatcgagaccatcctggctaacgcggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcgcctgtggtcccggctactcgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagctgagatcgcgccactgcaccccagcctgggcgacagagcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF274 6 99.0 Weakly correlated
2 ZNF766 6 43.0 Weakly correlated
3 ZKSCAN1 5 160.0 Weakly correlated
4 ZNF382 5 99.0 Weakly correlated
5 ZNF589 4 28.9 Weakly correlated
6 ZIM3 3 87.0 Weakly correlated
7 ZNF100 3 28.9 Weakly correlated
8 ZNF317 3 99.0 Weakly correlated
9 ZNF441 3 43.0 Weakly correlated
10 ZNF680 3 28.9 Weakly correlated
11 ZNF707 3 74.0 Weakly correlated
12 ZNF792 3 94.0 Weakly correlated
13 ZNF8 3 99.0 Weakly correlated
14 ZFP37 2 99.0 Weakly correlated
15 ZFP57 2 87.0 Weakly correlated
16 ZNF101 2 43.0 Weakly correlated
17 ZNF114 2 28.9 Weakly correlated
18 ZNF175 2 94.0 Weakly correlated
19 ZNF18 2 160.0 Weakly correlated
20 ZNF202 2 160.0 Weakly correlated
21 ZNF215 2 99.0 Weakly correlated
22 ZNF263 2 180.0 Weakly correlated
23 ZNF28 2 28.9 Weakly correlated
24 ZNF2 2 99.0 Weakly correlated
25 ZNF324 2 99.0 Weakly correlated
26 ZNF33A 2 99.0 Weakly correlated
27 ZNF394 2 99.0 Weakly correlated
28 ZNF419 2 28.9 Weakly correlated
29 ZNF487 2 28.9 Weakly correlated
30 ZNF514 2 94.0 Weakly correlated
31 ZNF549 2 87.0 Weakly correlated
32 ZNF583 2 99.0 Weakly correlated
33 ZNF610 2 28.9 Weakly correlated
34 ZNF671 2 94.0 Weakly correlated
35 ZNF701 2 28.9 Weakly correlated
36 ZNF705B 2 28.9 Weakly correlated
37 ZNF746 2 99.0 Weakly correlated
38 ZNF793 2 99.0 Weakly correlated
39 ZNF84 2 99.0 Weakly correlated
40 RBAK 1 99.0 Weakly correlated
41 ZFP69B 1 99.0 Weakly correlated
42 ZFP90 1 99.0 Weakly correlated
43 ZIK1 1 87.0 Weakly correlated
44 ZKSCAN2 1 180.0 Weakly correlated
45 ZKSCAN3 1 99.0 Weakly correlated
46 ZKSCAN4 1 99.0 Weakly correlated
47 ZKSCAN5 1 160.0 Weakly correlated
48 ZKSCAN8 1 160.0 Weakly correlated
49 ZNF12 1 99.0 Weakly correlated
50 ZNF132 1 94.0 Weakly correlated
51 ZNF133 1 99.0 Weakly correlated
52 ZNF140 1 99.0 Weakly correlated
53 ZNF141 1 43.0 Weakly correlated
54 ZNF157 1 99.0 Weakly correlated
55 ZNF169 1 94.0 Weakly correlated
56 ZNF177 1 94.0 Weakly correlated
57 ZNF17 1 69.0 Weakly correlated
58 ZNF180 1 99.0 Weakly correlated
59 ZNF189 1 99.0 Weakly correlated
60 ZNF197 1 99.0 Weakly correlated
61 ZNF19 1 99.0 Weakly correlated
62 ZNF20 1 43.0 Weakly correlated
63 ZNF214 1 99.0 Weakly correlated
64 ZNF222 1 43.0 Weakly correlated
65 ZNF223 1 43.0 Weakly correlated
66 ZNF224 1 69.0 Weakly correlated
67 ZNF230 1 28.9 Weakly correlated
68 ZNF234 1 99.0 Weakly correlated
69 ZNF248 1 99.0 Weakly correlated
70 ZNF251 1 94.0 Weakly correlated
71 ZNF253 1 19.6 Weakly correlated
72 ZNF264 1 99.0 Weakly correlated
73 ZNF273 1 28.9 Weakly correlated
74 ZNF282 1 319.0 Weakly correlated
75 ZNF284 1 43.0 Weakly correlated
76 ZNF287 1 99.0 Weakly correlated
77 ZNF300 1 99.0 Weakly correlated
78 ZNF302 1 43.0 Weakly correlated
79 ZNF304 1 99.0 Weakly correlated
80 ZNF30 1 94.0 Weakly correlated
81 ZNF311 1 99.0 Weakly correlated
82 ZNF320 1 28.9 Weakly correlated
83 ZNF324B 1 99.0 Weakly correlated
84 ZNF331 1 94.0 Weakly correlated
85 ZNF333 1 99.0 Weakly correlated
86 ZNF337 1 43.0 Weakly correlated
87 ZNF33B 1 99.0 Weakly correlated
88 ZNF347 1 43.0 Weakly correlated
89 ZNF354A 1 99.0 Weakly correlated
90 ZNF354C 1 99.0 Weakly correlated
91 ZNF383 1 99.0 Weakly correlated
92 ZNF398 1 99.0 Weakly correlated
93 ZNF418 1 43.0 Weakly correlated
94 ZNF420 1 94.0 Weakly correlated
95 ZNF429 1 28.9 Weakly correlated
96 ZNF430 1 19.6 Weakly correlated
97 ZNF432 1 99.0 Weakly correlated
98 ZNF442 1 43.0 Weakly correlated
99 ZNF44 1 43.0 Weakly correlated
100 ZNF454 1 99.0 Weakly correlated
101 ZNF45 1 99.0 Weakly correlated
102 ZNF468 1 28.9 Weakly correlated
103 ZNF479 1 6.4 Moderately correlated
104 ZNF480 1 43.0 Weakly correlated
105 ZNF483 1 99.0 Weakly correlated
106 ZNF484 1 99.0 Weakly correlated
107 ZNF485 1 94.0 Weakly correlated
108 ZNF486 1 8.6 Moderately correlated
109 ZNF500 1 160.0 Weakly correlated
110 ZNF506 1 28.9 Weakly correlated
111 ZNF510 1 99.0 Weakly correlated
112 ZNF519 1 19.6 Weakly correlated
113 ZNF525 1 19.6 Weakly correlated
114 ZNF528 1 43.0 Weakly correlated
115 ZNF530 1 28.9 Weakly correlated
116 ZNF534 1 19.6 Weakly correlated
117 ZNF543 1 99.0 Weakly correlated
118 ZNF544 1 0.0 Weakly correlated
119 ZNF547 1 74.0 Weakly correlated
120 ZNF548 1 94.0 Weakly correlated
121 ZNF550 1 94.0 Weakly correlated
122 ZNF551 1 94.0 Weakly correlated
123 ZNF555 1 94.0 Weakly correlated
124 ZNF556 1 94.0 Weakly correlated
125 ZNF557 1 15.2 Highly correlated
126 ZNF558 1 99.0 Weakly correlated
127 ZNF559 1 74.0 Weakly correlated
128 ZNF560 1 43.0 Weakly correlated
129 ZNF561 1 43.0 Weakly correlated
130 ZNF567 1 99.0 Weakly correlated
131 ZNF573 1 94.0 Weakly correlated
132 ZNF57 1 28.9 Weakly correlated
133 ZNF582 1 99.0 Weakly correlated
134 ZNF585A 1 99.0 Weakly correlated
135 ZNF585B 1 99.0 Weakly correlated
136 ZNF587 1 28.9 Weakly correlated
137 ZNF607 1 43.0 Weakly correlated
138 ZNF611 1 19.6 Weakly correlated
139 ZNF616 1 43.0 Weakly correlated
140 ZNF641 1 99.0 Weakly correlated
141 ZNF649 1 28.9 Weakly correlated
142 ZNF667 1 99.0 Weakly correlated
143 ZNF669 1 43.0 Weakly correlated
144 ZNF66 1 0.0 Weakly correlated
145 ZNF674 1 99.0 Weakly correlated
146 ZNF682 1 28.9 Weakly correlated
147 ZNF684 1 99.0 Weakly correlated
148 ZNF695 1 28.9 Weakly correlated
149 ZNF699 1 99.0 Weakly correlated
150 ZNF69 1 28.9 Weakly correlated
151 ZNF700 1 28.9 Weakly correlated
152 ZNF705E 1 0.0 Weakly correlated
153 ZNF718 1 19.6 Weakly correlated
154 ZNF723 1 15.2 Highly correlated
155 ZNF730 1 19.6 Weakly correlated
156 ZNF735 1 28.9 Weakly correlated
157 ZNF747 1 43.0 Weakly correlated
158 ZNF749 1 28.9 Weakly correlated
159 ZNF74 1 99.0 Weakly correlated
160 ZNF75D 1 94.0 Weakly correlated
161 ZNF764 1 160.0 Weakly correlated
162 ZNF772 1 94.0 Weakly correlated
163 ZNF776 1 43.0 Weakly correlated
164 ZNF777 1 319.0 Weakly correlated
165 ZNF782 1 99.0 Weakly correlated
166 ZNF785 1 94.0 Weakly correlated
167 ZNF786 1 99.0 Weakly correlated
168 ZNF789 1 99.0 Weakly correlated
169 ZNF791 1 87.0 Weakly correlated
170 ZNF7 1 99.0 Weakly correlated
171 ZNF805 1 99.0 Weakly correlated
172 ZNF808 1 19.6 Weakly correlated
173 ZNF813 1 28.9 Weakly correlated
174 ZNF816 1 28.9 Weakly correlated
175 ZNF81 1 99.0 Weakly correlated
176 ZNF823 1 43.0 Weakly correlated
177 ZNF878 1 43.0 Weakly correlated
178 ZNF879 1 99.0 Weakly correlated
179 ZNF880 1 28.9 Weakly correlated
180 ZNF92 1 28.9 Weakly correlated
181 ZNF93 1 8.6 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF441 3 43.0 Weakly correlated
2 ZNF582 1 99.0 Weakly correlated
3 ZKSCAN2 1 180.0 Weakly correlated
4 ZNF324B 1 99.0 Weakly correlated
5 ZNF398 1 99.0 Weakly correlated
6 ZNF432 1 99.0 Weakly correlated
7 ZNF641 1 99.0 Weakly correlated
8 ZNF764 1 160.0 Weakly correlated
9 ZNF223 1 43.0 Weakly correlated
10 ZNF442 1 43.0 Weakly correlated
11 ZNF548 1 94.0 Weakly correlated
12 ZNF777 1 319.0 Weakly correlated
13 ZNF57 1 28.9 Weakly correlated
14 ZNF880 1 28.9 Weakly correlated
15 ZNF347 1 43.0 Weakly correlated
16 ZNF487 1 28.9 Weakly correlated
17 ZNF543 1 99.0 Weakly correlated
18 ZNF557 1 15.2 Highly correlated
19 ZNF74 1 99.0 Weakly correlated
20 ZNF823 1 43.0 Weakly correlated
21 ZNF419 1 28.9 Weakly correlated
22 ZFP57 1 87.0 Weakly correlated
23 ZKSCAN3 1 99.0 Weakly correlated
24 ZNF114 1 28.9 Weakly correlated
25 ZNF222 1 43.0 Weakly correlated
26 ZNF224 1 69.0 Weakly correlated
27 ZNF300 1 99.0 Weakly correlated
28 ZNF530 1 28.9 Weakly correlated
29 ZNF7 1 99.0 Weakly correlated
30 ZNF19 1 99.0 Weakly correlated
31 RBAK 1 99.0 Weakly correlated
32 ZNF454 1 99.0 Weakly correlated
33 ZNF514 1 94.0 Weakly correlated
34 ZNF544 1 0.0 Weakly correlated
35 ZNF782 1 99.0 Weakly correlated
36 ZNF214 1 99.0 Weakly correlated
37 ZNF33B 1 99.0 Weakly correlated
38 ZNF555 1 94.0 Weakly correlated
39 ZNF583 1 99.0 Weakly correlated
40 ZNF772 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats